Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:55:10 (932524): wrapper (7.7.26015): starting
06:55:10 (932524): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 06:55:10] Arguments: --nthreads 8
[2025-12-02 06:55:10] Threads: 8
[2025-12-02 06:55:10] Checking for CVMFS
[2025-12-02 06:55:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 06:55:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 06:55:12] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 06:55:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 06:55:13] 2.13.3.0 14328 38635 280456 153554 2 477 33749798 40960000 49341 16776704 0 490070025 99.722 354365529 48963 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 06:55:13] CVMFS is ok
[2025-12-02 06:55:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 06:55:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 06:55:13] Further information can be found at the LHC@home message board.
[2025-12-02 06:55:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 06:55:13] Checking for apptainer binary...
[2025-12-02 06:55:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 06:55:13] Running /usr/bin/apptainer --version
[2025-12-02 06:55:14] apptainer version 1.4.4-1.el9
[2025-12-02 06:55:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 06:55:14] c8-16-2.aglt2.org
[2025-12-02 06:55:14] apptainer works
[2025-12-02 06:55:14] Set ATHENA_PROC_NUMBER=8
[2025-12-02 06:55:14] Set ATHENA_CORE_NUMBER=8
[2025-12-02 06:55:15] Starting ATLAS job with PandaID=6899576235
[2025-12-02 06:55:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 19:05:50]  *** The last 200 lines of the pilot log: ***
[2025-12-02 19:05:50] 2025-12-03 00:04:18,401 | INFO     | time since job start (43634s) is within the limit (172800.0s)
[2025-12-02 19:05:50] 2025-12-03 00:04:19,268 | INFO     | monitor loop #2270: job 0:6899576235 is in state 'finished'
[2025-12-02 19:05:50] 2025-12-03 00:04:19,268 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 19:05:50] 2025-12-03 00:04:20,410 | INFO     | time since job start (43636s) is within the limit (172800.0s)
[2025-12-02 19:05:50] 2025-12-03 00:04:21,774 | INFO     | monitor loop #2271: job 0:6899576235 is in state 'finished'
[2025-12-02 19:05:50] 2025-12-03 00:04:21,774 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 19:05:50] 2025-12-03 00:04:24,358 | INFO     | monitor loop #2272: job 0:6899576235 is in state 'finished'
[2025-12-02 19:05:50] 2025-12-03 00:04:24,358 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 19:05:50] 2025-12-03 00:04:25,352 | INFO     | PID=956660 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 19:05:50] 2025-12-03 00:04:25,352 | INFO     | .. there are 114 such processes running
[2025-12-02 19:05:50] 2025-12-03 00:04:26,353 | INFO     | time since job start (43642s) is within the limit (172800.0s)
[2025-12-02 19:05:50] 2025-12-03 00:04:26,864 | INFO     | monitor loop #2273: job 0:6899576235 is in state 'finished'
[2025-12-02 19:05:50] 2025-12-03 00:04:26,864 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 19:05:50] 2025-12-03 00:04:28,360 | INFO     | time since job start (43644s) is within the limit (172800.0s)
[2025-12-02 19:05:50] 2025-12-03 00:04:29,376 | INFO     | monitor loop #2274: job 0:6899576235 is in state 'finished'
[2025-12-02 19:05:50] 2025-12-03 00:04:29,376 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 19:05:50] 2025-12-03 00:04:30,369 | INFO     | time since job start (43646s) is within the limit (172800.0s)
[2025-12-02 19:05:50] 2025-12-03 00:04:31,281 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 19:05:50] 2025-12-03 00:04:31,332 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.0245859374995
[2025-12-02 19:05:50] 2025-12-03 00:04:31,396 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6899576235/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 19:05:50] 2025-12-03 00:04:31,396 | INFO     | extracted standard info from prmon json
[2025-12-02 19:05:50] 2025-12-03 00:04:31,397 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 19:05:50] 2025-12-03 00:04:31,397 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 19:05:50] 2025-12-03 00:04:31,410 | INFO     | fitting pss+swap vs Time
[2025-12-02 19:05:50] 2025-12-03 00:04:31,411 | INFO     | sum of square deviations: 111912424570.7362
[2025-12-02 19:05:50] 2025-12-03 00:04:31,425 | INFO     | sum of deviations: 917135552124.4668
[2025-12-02 19:05:50] 2025-12-03 00:04:31,425 | INFO     | mean x: 1764698519.5421348
[2025-12-02 19:05:50] 2025-12-03 00:04:31,425 | INFO     | mean y: 2780624.3511235956
[2025-12-02 19:05:50] 2025-12-03 00:04:31,425 | INFO     | intersect: -14459132405.068806
[2025-12-02 19:05:50] 2025-12-03 00:04:31,426 | INFO     | chi2: 33.858203071668456
[2025-12-02 19:05:50] 2025-12-03 00:04:31,426 | INFO     | sum of square deviations: 109571465979.73674
[2025-12-02 19:05:50] 2025-12-03 00:04:31,436 | INFO     | sum of deviations: 1150985037810.4775
[2025-12-02 19:05:50] 2025-12-03 00:04:31,436 | INFO     | mean x: 1764698367.056577
[2025-12-02 19:05:50] 2025-12-03 00:04:31,436 | INFO     | mean y: 2795849.2630834514
[2025-12-02 19:05:50] 2025-12-03 00:04:31,436 | INFO     | intersect: -18534342433.675697
[2025-12-02 19:05:50] 2025-12-03 00:04:31,437 | INFO     | chi2: 30.392358003961263
[2025-12-02 19:05:50] 2025-12-03 00:04:31,437 | INFO     | current chi2=30.392358003961263 (change=10.236352650998509 %)
[2025-12-02 19:05:50] 2025-12-03 00:04:31,437 | INFO     | right removable region: 706
[2025-12-02 19:05:50] 2025-12-03 00:04:31,441 | INFO     | sum of square deviations: 109570579039.73674
[2025-12-02 19:05:50] 2025-12-03 00:04:31,451 | INFO     | sum of deviations: 619702322136.1278
[2025-12-02 19:05:50] 2025-12-03 00:04:31,451 | INFO     | mean x: 1764698672.056577
[2025-12-02 19:05:50] 2025-12-03 00:04:31,451 | INFO     | mean y: 2799993.8217821782
[2025-12-02 19:05:50] 2025-12-03 00:04:31,452 | INFO     | intersect: -9977870680.076933
[2025-12-02 19:05:50] 2025-12-03 00:04:31,452 | INFO     | chi2: 28.632138910416728
[2025-12-02 19:05:50] 2025-12-03 00:04:31,452 | INFO     | current chi2=28.632138910416728 (change=15.435149202069567 %)
[2025-12-02 19:05:50] 2025-12-03 00:04:31,452 | INFO     | left removable region: 10
[2025-12-02 19:05:50] 2025-12-03 00:04:31,452 | INFO     | sum of square deviations: 104535008618.4771
[2025-12-02 19:05:50] 2025-12-03 00:04:31,466 | INFO     | sum of deviations: 622288959260.9656
[2025-12-02 19:05:50] 2025-12-03 00:04:31,466 | INFO     | mean x: 1764698641.5890806
[2025-12-02 19:05:50] 2025-12-03 00:04:31,466 | INFO     | mean y: 2836549.7586206896
[2025-12-02 19:05:50] 2025-12-03 00:04:31,467 | INFO     | intersect: -10502280306.276196
[2025-12-02 19:05:50] 2025-12-03 00:04:31,467 | INFO     | chi2: 20.27685492513315
[2025-12-02 19:05:50] 2025-12-03 00:04:31,467 | INFO     | current memory leak: 5.95 B/s (using 696 data points, chi2=20.28)
[2025-12-02 19:05:50] 2025-12-03 00:04:31,468 | INFO     | could have reported an average CPU frequency of 3800 MHz (27 samples)
[2025-12-02 19:05:50] 2025-12-03 00:04:31,468 | INFO     | ..............................
[2025-12-02 19:05:50] 2025-12-03 00:04:31,468 | INFO     | . Timing measurements:
[2025-12-02 19:05:50] 2025-12-03 00:04:31,468 | INFO     | . get job = 0 s
[2025-12-02 19:05:50] 2025-12-03 00:04:31,468 | INFO     | . initial setup = 9 s
[2025-12-02 19:05:50] 2025-12-03 00:04:31,468 | INFO     | . payload setup = 65 s
[2025-12-02 19:05:50] 2025-12-03 00:04:31,468 | INFO     | . stage-in = 0 s
[2025-12-02 19:05:50] 2025-12-03 00:04:31,468 | INFO     | . payload execution = 43430 s
[2025-12-02 19:05:50] 2025-12-03 00:04:31,468 | INFO     | . stage-out = 7 s
[2025-12-02 19:05:50] 2025-12-03 00:04:31,468 | INFO     | . log creation = 3 s
[2025-12-02 19:05:50] 2025-12-03 00:04:31,468 | INFO     | ..............................
[2025-12-02 19:05:50] 2025-12-03 00:04:31,785 | INFO     | 
[2025-12-02 19:05:50] 2025-12-03 00:04:31,785 | INFO     | job summary report
[2025-12-02 19:05:50] 2025-12-03 00:04:31,786 | INFO     | --------------------------------------------------
[2025-12-02 19:05:50] 2025-12-03 00:04:31,786 | INFO     | PanDA job id: 6899576235
[2025-12-02 19:05:50] 2025-12-03 00:04:31,786 | INFO     | task id: 47556173
[2025-12-02 19:05:50] 2025-12-03 00:04:31,786 | INFO     | errors: (none)
[2025-12-02 19:05:50] 2025-12-03 00:04:31,786 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 19:05:50] 2025-12-03 00:04:31,786 | INFO     | pilot state: finished 
[2025-12-02 19:05:50] 2025-12-03 00:04:31,786 | INFO     | transexitcode: 0
[2025-12-02 19:05:50] 2025-12-03 00:04:31,786 | INFO     | exeerrorcode: 0
[2025-12-02 19:05:50] 2025-12-03 00:04:31,786 | INFO     | exeerrordiag: 
[2025-12-02 19:05:50] 2025-12-03 00:04:31,786 | INFO     | exitcode: 0
[2025-12-02 19:05:50] 2025-12-03 00:04:31,786 | INFO     | exitmsg: OK
[2025-12-02 19:05:50] 2025-12-03 00:04:31,786 | INFO     | cpuconsumptiontime: 132258 s
[2025-12-02 19:05:50] 2025-12-03 00:04:31,786 | INFO     | nevents: 1000
[2025-12-02 19:05:50] 2025-12-03 00:04:31,786 | INFO     | neventsw: 0
[2025-12-02 19:05:50] 2025-12-03 00:04:31,786 | INFO     | pid: 998082
[2025-12-02 19:05:50] 2025-12-03 00:04:31,786 | INFO     | pgrp: 998082
[2025-12-02 19:05:50] 2025-12-03 00:04:31,786 | INFO     | corecount: 8
[2025-12-02 19:05:50] 2025-12-03 00:04:31,786 | INFO     | event service: False
[2025-12-02 19:05:50] 2025-12-03 00:04:31,786 | INFO     | sizes: {0: 2283488, 1: 2284173, 2: 2284372, 3: 2284372, 13: 2284400, 24: 2284456, 35: 2284612, 46: 2284930, 57: 2284930, 43501: 2329139, 43510: 2338133, 43512: 233
[2025-12-02 19:05:50] 2025-12-03 00:04:31,786 | INFO     | --------------------------------------------------
[2025-12-02 19:05:50] 2025-12-03 00:04:31,786 | INFO     | 
[2025-12-02 19:05:50] 2025-12-03 00:04:31,786 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-12-02 19:05:50] 2025-12-03 00:04:31,890 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 19:05:50] 2025-12-03 00:04:31,891 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 19:05:50] 2025-12-03 00:04:31,891 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 19:05:50] 2025-12-03 00:04:31,891 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 19:05:50] 2025-12-03 00:04:31,891 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 19:05:50] 2025-12-03 00:04:31,891 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 19:05:50] 2025-12-03 00:04:31,891 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 19:05:50] 2025-12-03 00:04:31,891 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 19:05:50] 2025-12-03 00:04:31,891 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 19:05:50] 2025-12-03 00:04:31,891 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 19:05:50] 2025-12-03 00:04:31,891 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 19:05:50] 2025-12-03 00:04:31,891 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 19:05:50] 2025-12-03 00:04:31,891 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 19:05:50] 2025-12-03 00:04:31,891 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 19:05:50] 2025-12-03 00:04:31,891 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 19:05:50] 2025-12-03 00:04:31,891 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 19:05:50] 2025-12-03 00:04:31,891 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 19:05:50] 2025-12-03 00:04:31,891 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 19:05:50] 2025-12-03 00:04:31,891 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 19:05:50] 2025-12-03 00:04:31,891 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 19:05:50] 2025-12-03 00:04:31,891 | INFO     | job 6899576235 has completed (purged errors)
[2025-12-02 19:05:50] 2025-12-03 00:04:31,891 | INFO     | overall cleanup function is called
[2025-12-02 19:05:50] 2025-12-03 00:04:32,912 | INFO     | --- collectZombieJob: --- 10, [998082]
[2025-12-02 19:05:50] 2025-12-03 00:04:32,912 | INFO     | zombie collector waiting for pid 998082
[2025-12-02 19:05:50] 2025-12-03 00:04:32,912 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 19:05:50] 2025-12-03 00:04:32,912 | INFO     | collected zombie processes
[2025-12-02 19:05:50] 2025-12-03 00:04:32,912 | INFO     | will attempt to kill all subprocesses of pid=998082
[2025-12-02 19:05:50] 2025-12-03 00:04:35,967 | INFO     | process IDs to be killed: [998082] (in reverse order)
[2025-12-02 19:05:50] 2025-12-03 00:04:36,304 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 19:05:50] 2025-12-03 00:04:36,309 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 19:05:50] 2025-12-03 00:04:36,428 | INFO     | did not find any defunct processes belonging to 998082
[2025-12-02 19:05:50] 2025-12-03 00:04:36,554 | INFO     | did not find any defunct processes belonging to 998082
[2025-12-02 19:05:50] 2025-12-03 00:04:36,568 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 19:05:50] 2025-12-03 00:04:36,568 | INFO     | ready for new job
[2025-12-02 19:05:50] 2025-12-03 00:04:36,568 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 19:05:50] 2025-12-03 00:04:36,631 | INFO     | ***************************************
[2025-12-02 19:05:50] 2025-12-03 00:04:36,631 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 19:05:50] 2025-12-03 00:04:36,631 | INFO     | ***************************************
[2025-12-02 19:05:50] 2025-12-03 00:04:36,631 | INFO     | 
[2025-12-02 19:05:50] 2025-12-03 00:04:36,701 | INFO     | architecture information:
[2025-12-02 19:05:50] 2025-12-03 00:04:36,874 | INFO     | executing command: cat /etc/os-release
[2025-12-02 19:05:50] 2025-12-03 00:04:36,927 | INFO     | cat /etc/os-release:
[2025-12-02 19:05:50] NAME="CentOS Linux"
[2025-12-02 19:05:50] VERSION="7 (Core)"
[2025-12-02 19:05:50] ID="centos"
[2025-12-02 19:05:50] ID_LIKE="rhel fedora"
[2025-12-02 19:05:50] VERSION_ID="7"
[2025-12-02 19:05:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 19:05:50] ANSI_COLOR="0;31"
[2025-12-02 19:05:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 19:05:50] HOME_URL="https://www.centos.org/"
[2025-12-02 19:05:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 19:05:50] 
[2025-12-02 19:05:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 19:05:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 19:05:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 19:05:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 19:05:50] 
[2025-12-02 19:05:50] 2025-12-03 00:04:36,928 | INFO     | ***************************************
[2025-12-02 19:05:50] 2025-12-03 00:04:37,436 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-12-02 19:05:50] 2025-12-03 00:04:37,477 | INFO     | sufficient remaining disk space (164159815680 B)
[2025-12-02 19:05:50] 2025-12-03 00:04:37,478 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 19:05:50] 2025-12-03 00:04:37,478 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 19:05:50] 2025-12-03 00:04:37,478 | INFO     | update_server=False
[2025-12-02 19:05:50] 2025-12-03 00:04:37,478 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 19:05:50] 2025-12-03 00:04:37,478 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 19:05:50] 2025-12-03 00:04:37,526 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 19:05:50] 2025-12-03 00:04:37,567 | INFO     | all job control threads have been joined
[2025-12-02 19:05:50] 2025-12-03 00:04:38,003 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 19:05:50] 2025-12-03 00:04:38,003 | INFO     | aborting loop
[2025-12-02 19:05:50] 2025-12-03 00:04:38,292 | INFO     | all payload control threads have been joined
[2025-12-02 19:05:50] 2025-12-03 00:04:38,333 | INFO     | all data control threads have been joined
[2025-12-02 19:05:50] 2025-12-03 00:04:38,483 | INFO     | [job] retrieve thread has finished
[2025-12-02 19:05:50] 2025-12-03 00:04:38,484 | INFO     | [job] queue monitor thread has finished
[2025-12-02 19:05:50] 2025-12-03 00:04:38,493 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 19:05:50] 2025-12-03 00:04:38,573 | INFO     | [payload] failed_post thread has finished
[2025-12-02 19:05:50] 2025-12-03 00:04:38,575 | INFO     | [job] control thread has finished
[2025-12-02 19:05:50] 2025-12-03 00:04:38,734 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 19:05:50] 2025-12-03 00:04:38,735 | INFO     | [data] copytool_in thread has finished
[2025-12-02 19:05:50] 2025-12-03 00:04:38,775 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 19:05:50] 2025-12-03 00:04:39,009 | INFO     | [job] job monitor thread has finished
[2025-12-02 19:05:50] 2025-12-03 00:04:39,233 | INFO     | [payload] validate_post thread has finished
[2025-12-02 19:05:50] 2025-12-03 00:04:39,304 | INFO     | [payload] control thread has finished
[2025-12-02 19:05:50] 2025-12-03 00:04:39,339 | INFO     | [data] control thread has finished
[2025-12-02 19:05:50] 2025-12-03 00:04:39,482 | INFO     | [job] validate thread has finished
[2025-12-02 19:05:50] 2025-12-03 00:04:39,542 | INFO     | [data] copytool_out thread has finished
[2025-12-02 19:05:50] 2025-12-03 00:04:39,601 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 19:05:50] 2025-12-03 00:04:40,971 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 19:05:50] 2025-12-03 00:04:44,995 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 19:05:50] 2025-12-03 00:05:12,439 | INFO     | PID=956660 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 19:05:50] 2025-12-03 00:05:12,439 | INFO     | .. there are 113 such processes running
[2025-12-02 19:05:50] 2025-12-03 00:05:12,440 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 19:05:50] 2025-12-03 00:05:12,440 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 19:05:50] 2025-12-03 00:05:12,440 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 19:05:50] 2025-12-03 00:05:22,477 | INFO     | [monitor] cgroup control has ended
[2025-12-02 19:05:50] 2025-12-03 00:05:24,311 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139838397224768)>', '<ExcThread(monitor, started 139837684311808)>']
[2025-12-02 19:05:50] 2025-12-03 00:05:24,516 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 19:05:50] 2025-12-03 00:05:24,516 | INFO     | [monitor] control thread has ended
[2025-12-02 19:05:50] 2025-12-03 00:05:29,337 | INFO     | all workflow threads have been joined
[2025-12-02 19:05:50] 2025-12-03 00:05:29,337 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 19:05:50] 2025-12-03 00:05:29,338 | INFO     | traces error code: 0
[2025-12-02 19:05:50] 2025-12-03 00:05:29,338 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 19:05:50] 2025-12-03 00:05:29,498 [wrapper] ==== pilot stdout END ====
[2025-12-02 19:05:50] 2025-12-03 00:05:29,506 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 19:05:50] 2025-12-03 00:05:29,555 [wrapper] pilotpid: 956660
[2025-12-02 19:05:50] 2025-12-03 00:05:29,579 [wrapper] Pilot exit status: 0
[2025-12-02 19:05:50] 2025-12-03 00:05:29,719 [wrapper] pandaids: 6899576235
[2025-12-02 19:05:50] 2025-12-03 00:05:30,285 [wrapper] cleanup supervisor_pilot  683337 956664
[2025-12-02 19:05:50] 2025-12-03 00:05:30,313 [wrapper] Test setup, not cleaning
[2025-12-02 19:05:50] 2025-12-03 00:05:30,344 [wrapper] apfmon messages muted
[2025-12-02 19:05:50] 2025-12-03 00:05:30,381 [wrapper] ==== wrapper stdout END ====
[2025-12-02 19:05:50] 2025-12-03 00:05:30,442 [wrapper] ==== wrapper stderr END ====
[2025-12-02 19:05:50]  *** Error codes and diagnostics ***
[2025-12-02 19:05:50]     "exeErrorCode": 0,
[2025-12-02 19:05:50]     "exeErrorDiag": "",
[2025-12-02 19:05:50]     "pilotErrorCode": 0,
[2025-12-02 19:05:50]     "pilotErrorDiag": "",
[2025-12-02 19:05:50]  *** Listing of results directory ***
[2025-12-02 19:05:50] total 1303496
[2025-12-02 19:05:50] -rw-r--r--. 1 boincer umatlas    576529 Nov 27 03:46 pilot3.tar.gz
[2025-12-02 19:05:50] -rwx------. 1 boincer umatlas     36292 Nov 27 03:46 runpilot2-wrapper.sh
[2025-12-02 19:05:50] -rw-r--r--. 1 boincer umatlas      5112 Nov 27 03:46 queuedata.json
[2025-12-02 19:05:50] -rw-r--r--. 1 boincer umatlas       100 Dec  2 06:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 19:05:50] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 06:55 run_atlas
[2025-12-02 19:05:50] -rw-r--r--. 1 boincer umatlas       105 Dec  2 06:55 job.xml
[2025-12-02 19:05:50] -rw-r--r--. 2 boincer umatlas 410718391 Dec  2 06:55 EVNT.47483658._003386.pool.root.1
[2025-12-02 19:05:50] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 06:55 start_atlas.sh
[2025-12-02 19:05:50] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 06:55 shared
[2025-12-02 19:05:50] -rw-r--r--. 2 boincer umatlas    590102 Dec  2 06:55 input.tar.gz
[2025-12-02 19:05:50] -rw-r--r--. 1 boincer umatlas         0 Dec  2 06:55 boinc_lockfile
[2025-12-02 19:05:50] -rw-r--r--. 1 boincer umatlas      2787 Dec  2 06:55 pandaJob.out
[2025-12-02 19:05:50] -rw-------. 1 boincer umatlas        57 Dec  2 06:55 setup.sh.local
[2025-12-02 19:05:50] -rw-------. 1 boincer umatlas    986783 Dec  2 06:56 agis_schedconf.cvmfs.json
[2025-12-02 19:05:50] drwx------. 5 boincer umatlas      4096 Dec  2 06:57 pilot3
[2025-12-02 19:05:50] -rw-r--r--. 1 boincer umatlas       532 Dec  2 18:34 boinc_task_state.xml
[2025-12-02 19:05:50] -rw-r--r--. 1 boincer umatlas      7174 Dec  2 19:01 init_data.xml
[2025-12-02 19:05:50] -rw-------. 1 boincer umatlas 906219057 Dec  2 19:01 HITS.47556173._003423.pool.root.1
[2025-12-02 19:05:50] -rw-------. 1 boincer umatlas      1051 Dec  2 19:03 memory_monitor_summary.json
[2025-12-02 19:05:50] -rw-------. 1 boincer umatlas   1516240 Dec  2 19:03 agis_ddmendpoints.agis.ALL.json
[2025-12-02 19:05:50] -rw-------. 1 boincer umatlas   1883497 Dec  2 19:03 log.47556173._003423.job.log.tgz.1
[2025-12-02 19:05:50] -rw-------. 1 boincer umatlas      8585 Dec  2 19:04 heartbeat.json
[2025-12-02 19:05:50] -rw-------. 1 boincer umatlas        95 Dec  2 19:05 pilot_heartbeat.json
[2025-12-02 19:05:50] -rw-------. 1 boincer umatlas      4825 Dec  2 19:05 pilotlog.txt
[2025-12-02 19:05:50] -rw-------. 1 boincer umatlas   5081317 Dec  2 19:05 log.47556173._003423.job.log.1
[2025-12-02 19:05:50] -rw-------. 1 boincer umatlas       353 Dec  2 19:05 output.list
[2025-12-02 19:05:50] -rw-r--r--. 1 boincer umatlas       620 Dec  2 19:05 runtime_log
[2025-12-02 19:05:50] -rw-------. 1 boincer umatlas   6983680 Dec  2 19:05 result.tar.gz
[2025-12-02 19:05:50] -rw-r--r--. 1 boincer umatlas      9338 Dec  2 19:05 runtime_log.err
[2025-12-02 19:05:50] -rw-------. 1 boincer umatlas       659 Dec  2 19:05 JrvKDmEpmi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmlNKDmo5JXFn.diag
[2025-12-02 19:05:50] -rw-r--r--. 1 boincer umatlas        29 Dec  2 19:05 wrapper_checkpoint.txt
[2025-12-02 19:05:50] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 19:05 boinc_mmap_file
[2025-12-02 19:05:50] -rw-r--r--. 1 boincer umatlas     21892 Dec  2 19:05 stderr.txt
[2025-12-02 19:05:50] HITS file was successfully produced:
[2025-12-02 19:05:50] -rw-------. 1 boincer umatlas 906219057 Dec  2 19:01 shared/HITS.pool.root.1
[2025-12-02 19:05:50]  *** Contents of shared directory: ***
[2025-12-02 19:05:50] total 1293500
[2025-12-02 19:05:50] -rw-r--r--. 2 boincer umatlas 410718391 Dec  2 06:55 ATLAS.root_0
[2025-12-02 19:05:50] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 06:55 start_atlas.sh
[2025-12-02 19:05:50] -rw-r--r--. 2 boincer umatlas    590102 Dec  2 06:55 input.tar.gz
[2025-12-02 19:05:50] -rw-------. 1 boincer umatlas 906219057 Dec  2 19:01 HITS.pool.root.1
[2025-12-02 19:05:50] -rw-------. 1 boincer umatlas   6983680 Dec  2 19:05 result.tar.gz
19:05:51 (932524): run_atlas exited; CPU time 133249.519526
19:05:51 (932524): called boinc_finish(0)

</stderr_txt>
]]>

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