Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:38:28 (3857290): wrapper (7.7.26015): starting
04:38:28 (3857290): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 04:38:29] Arguments: --nthreads 8
[2025-12-02 04:38:29] Threads: 8
[2025-12-02 04:38:29] Checking for CVMFS
[2025-12-02 04:38:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 04:38:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 04:38:30] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 04:38:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 04:38:33] 2.13.3.0 14328 38498 266236 153550 2 314 31024772 40960000 49006 16776704 0 487810458 99.722 353737418 48981 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 04:38:33] CVMFS is ok
[2025-12-02 04:38:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 04:38:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 04:38:33] Further information can be found at the LHC@home message board.
[2025-12-02 04:38:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 04:38:33] Checking for apptainer binary...
[2025-12-02 04:38:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 04:38:33] Running /usr/bin/apptainer --version
[2025-12-02 04:38:33] apptainer version 1.4.4-1.el9
[2025-12-02 04:38:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 04:38:34] c8-16-2.aglt2.org
[2025-12-02 04:38:34] apptainer works
[2025-12-02 04:38:34] Set ATHENA_PROC_NUMBER=8
[2025-12-02 04:38:34] Set ATHENA_CORE_NUMBER=8
[2025-12-02 04:38:34] Starting ATLAS job with PandaID=6901110319
[2025-12-02 04:38:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 17:14:16]  *** The last 200 lines of the pilot log: ***
[2025-12-02 17:14:16] 2025-12-02 22:13:25,399 | INFO     | monitor loop #2354: job 0:6901110319 is in state 'finished'
[2025-12-02 17:14:16] 2025-12-02 22:13:25,399 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 17:14:16] 2025-12-02 22:13:26,125 | INFO     | time since job start (45181s) is within the limit (172800.0s)
[2025-12-02 17:14:16] 2025-12-02 22:13:27,930 | INFO     | monitor loop #2355: job 0:6901110319 is in state 'finished'
[2025-12-02 17:14:16] 2025-12-02 22:13:27,930 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 17:14:16] 2025-12-02 22:13:28,150 | INFO     | time since job start (45183s) is within the limit (172800.0s)
[2025-12-02 17:14:16] 2025-12-02 22:13:30,157 | INFO     | time since job start (45185s) is within the limit (172800.0s)
[2025-12-02 17:14:16] 2025-12-02 22:13:30,435 | INFO     | monitor loop #2356: job 0:6901110319 is in state 'finished'
[2025-12-02 17:14:16] 2025-12-02 22:13:30,435 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 17:14:16] 2025-12-02 22:13:32,167 | INFO     | time since job start (45187s) is within the limit (172800.0s)
[2025-12-02 17:14:16] 2025-12-02 22:13:32,940 | INFO     | monitor loop #2357: job 0:6901110319 is in state 'finished'
[2025-12-02 17:14:16] 2025-12-02 22:13:32,940 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 17:14:16] 2025-12-02 22:13:34,174 | INFO     | time since job start (45189s) is within the limit (172800.0s)
[2025-12-02 17:14:16] 2025-12-02 22:13:35,471 | INFO     | monitor loop #2358: job 0:6901110319 is in state 'finished'
[2025-12-02 17:14:16] 2025-12-02 22:13:35,471 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 17:14:16] 2025-12-02 22:13:36,205 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 17:14:16] 2025-12-02 22:13:36,229 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.0260312500004
[2025-12-02 17:14:16] 2025-12-02 22:13:36,267 | INFO     | time since job start (45191s) is within the limit (172800.0s)
[2025-12-02 17:14:16] 2025-12-02 22:13:36,276 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6901110319/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 17:14:16] 2025-12-02 22:13:36,277 | INFO     | extracted standard info from prmon json
[2025-12-02 17:14:16] 2025-12-02 22:13:36,277 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 17:14:16] 2025-12-02 22:13:36,277 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 17:14:16] 2025-12-02 22:13:36,305 | INFO     | fitting pss+swap vs Time
[2025-12-02 17:14:16] 2025-12-02 22:13:36,306 | INFO     | sum of square deviations: 123624602137.23854
[2025-12-02 17:14:16] 2025-12-02 22:13:36,353 | INFO     | sum of deviations: 2037570830288.8252
[2025-12-02 17:14:16] 2025-12-02 22:13:36,353 | INFO     | mean x: 1764691095.316576
[2025-12-02 17:14:16] 2025-12-02 22:13:36,353 | INFO     | mean y: 3239796.3913043477
[2025-12-02 17:14:16] 2025-12-02 22:13:36,353 | INFO     | intersect: -29082258058.605556
[2025-12-02 17:14:16] 2025-12-02 22:13:36,354 | INFO     | chi2: 36.96602017222628
[2025-12-02 17:14:16] 2025-12-02 22:13:36,354 | INFO     | sum of square deviations: 121122525775.62526
[2025-12-02 17:14:16] 2025-12-02 22:13:36,438 | INFO     | sum of deviations: 2331406142250.78
[2025-12-02 17:14:16] 2025-12-02 22:13:36,438 | INFO     | mean x: 1764690942.8290014
[2025-12-02 17:14:16] 2025-12-02 22:13:36,438 | INFO     | mean y: 3257708.982216142
[2025-12-02 17:14:16] 2025-12-02 22:13:36,438 | INFO     | intersect: -33964092929.88465
[2025-12-02 17:14:16] 2025-12-02 22:13:36,439 | INFO     | chi2: 33.49456185403776
[2025-12-02 17:14:16] 2025-12-02 22:13:36,439 | INFO     | current chi2=33.49456185403776 (change=9.390944175258369 %)
[2025-12-02 17:14:16] 2025-12-02 22:13:36,439 | INFO     | right removable region: 730
[2025-12-02 17:14:16] 2025-12-02 22:13:36,439 | INFO     | sum of square deviations: 121121710205.62524
[2025-12-02 17:14:16] 2025-12-02 22:13:36,482 | INFO     | sum of deviations: 1674727921279.701
[2025-12-02 17:14:16] 2025-12-02 22:13:36,483 | INFO     | mean x: 1764691247.8290014
[2025-12-02 17:14:16] 2025-12-02 22:13:36,483 | INFO     | mean y: 3261906.221614227
[2025-12-02 17:14:16] 2025-12-02 22:13:36,483 | INFO     | intersect: -24396803946.216198
[2025-12-02 17:14:16] 2025-12-02 22:13:36,491 | INFO     | chi2: 31.27505020199206
[2025-12-02 17:14:16] 2025-12-02 22:13:36,491 | INFO     | current chi2=31.27505020199206 (change=15.395138410139223 %)
[2025-12-02 17:14:16] 2025-12-02 22:13:36,491 | INFO     | left removable region: 10
[2025-12-02 17:14:16] 2025-12-02 22:13:36,492 | INFO     | sum of square deviations: 115735681435.26538
[2025-12-02 17:14:16] 2025-12-02 22:13:36,516 | INFO     | sum of deviations: 1690345122027.6497
[2025-12-02 17:14:16] 2025-12-02 22:13:36,516 | INFO     | mean x: 1764691217.3569446
[2025-12-02 17:14:16] 2025-12-02 22:13:36,516 | INFO     | mean y: 3305760.55
[2025-12-02 17:14:16] 2025-12-02 22:13:36,516 | INFO     | intersect: -25770398201.376358
[2025-12-02 17:14:16] 2025-12-02 22:13:36,517 | INFO     | chi2: 21.910079217509015
[2025-12-02 17:14:16] 2025-12-02 22:13:36,517 | INFO     | current memory leak: 14.61 B/s (using 720 data points, chi2=21.91)
[2025-12-02 17:14:16] 2025-12-02 22:13:36,534 | INFO     | could have reported an average CPU frequency of 3800 MHz (28 samples)
[2025-12-02 17:14:16] 2025-12-02 22:13:36,534 | INFO     | ..............................
[2025-12-02 17:14:16] 2025-12-02 22:13:36,534 | INFO     | . Timing measurements:
[2025-12-02 17:14:16] 2025-12-02 22:13:36,534 | INFO     | . get job = 0 s
[2025-12-02 17:14:16] 2025-12-02 22:13:36,534 | INFO     | . initial setup = 9 s
[2025-12-02 17:14:16] 2025-12-02 22:13:36,534 | INFO     | . payload setup = 117 s
[2025-12-02 17:14:16] 2025-12-02 22:13:36,534 | INFO     | . stage-in = 0 s
[2025-12-02 17:14:16] 2025-12-02 22:13:36,534 | INFO     | . payload execution = 44923 s
[2025-12-02 17:14:16] 2025-12-02 22:13:36,534 | INFO     | . stage-out = 9 s
[2025-12-02 17:14:16] 2025-12-02 22:13:36,534 | INFO     | . log creation = 2 s
[2025-12-02 17:14:16] 2025-12-02 22:13:36,534 | INFO     | ..............................
[2025-12-02 17:14:16] 2025-12-02 22:13:37,053 | INFO     | 
[2025-12-02 17:14:16] 2025-12-02 22:13:37,053 | INFO     | job summary report
[2025-12-02 17:14:16] 2025-12-02 22:13:37,053 | INFO     | --------------------------------------------------
[2025-12-02 17:14:16] 2025-12-02 22:13:37,053 | INFO     | PanDA job id: 6901110319
[2025-12-02 17:14:16] 2025-12-02 22:13:37,053 | INFO     | task id: 47531058
[2025-12-02 17:14:16] 2025-12-02 22:13:37,054 | INFO     | errors: (none)
[2025-12-02 17:14:16] 2025-12-02 22:13:37,054 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 17:14:16] 2025-12-02 22:13:37,054 | INFO     | pilot state: finished 
[2025-12-02 17:14:16] 2025-12-02 22:13:37,054 | INFO     | transexitcode: 0
[2025-12-02 17:14:16] 2025-12-02 22:13:37,054 | INFO     | exeerrorcode: 0
[2025-12-02 17:14:16] 2025-12-02 22:13:37,054 | INFO     | exeerrordiag: 
[2025-12-02 17:14:16] 2025-12-02 22:13:37,054 | INFO     | exitcode: 0
[2025-12-02 17:14:16] 2025-12-02 22:13:37,054 | INFO     | exitmsg: OK
[2025-12-02 17:14:16] 2025-12-02 22:13:37,054 | INFO     | cpuconsumptiontime: 120281 s
[2025-12-02 17:14:16] 2025-12-02 22:13:37,054 | INFO     | nevents: 1000
[2025-12-02 17:14:16] 2025-12-02 22:13:37,054 | INFO     | neventsw: 0
[2025-12-02 17:14:16] 2025-12-02 22:13:37,054 | INFO     | pid: 3908524
[2025-12-02 17:14:16] 2025-12-02 22:13:37,054 | INFO     | pgrp: 3908524
[2025-12-02 17:14:16] 2025-12-02 22:13:37,054 | INFO     | corecount: 8
[2025-12-02 17:14:16] 2025-12-02 22:13:37,054 | INFO     | event service: False
[2025-12-02 17:14:16] 2025-12-02 22:13:37,054 | INFO     | sizes: {0: 2284283, 1: 2284311, 2: 2284482, 13: 2284510, 24: 2284566, 35: 2284594, 44: 2285012, 46: 2285040, 45045: 2347660, 45046: 2347687, 45056: 2356737, 45058:
[2025-12-02 17:14:16] 2025-12-02 22:13:37,054 | INFO     | --------------------------------------------------
[2025-12-02 17:14:16] 2025-12-02 22:13:37,054 | INFO     | 
[2025-12-02 17:14:16] 2025-12-02 22:13:37,054 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-12-02 17:14:16] 2025-12-02 22:13:37,331 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 17:14:16] 2025-12-02 22:13:37,332 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 17:14:16] 2025-12-02 22:13:37,332 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 17:14:16] 2025-12-02 22:13:37,332 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 17:14:16] 2025-12-02 22:13:37,332 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 17:14:16] 2025-12-02 22:13:37,332 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 17:14:16] 2025-12-02 22:13:37,332 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 17:14:16] 2025-12-02 22:13:37,332 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 17:14:16] 2025-12-02 22:13:37,332 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 17:14:16] 2025-12-02 22:13:37,332 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 17:14:16] 2025-12-02 22:13:37,332 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 17:14:16] 2025-12-02 22:13:37,332 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 17:14:16] 2025-12-02 22:13:37,332 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 17:14:16] 2025-12-02 22:13:37,332 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 17:14:16] 2025-12-02 22:13:37,332 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 17:14:16] 2025-12-02 22:13:37,332 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 17:14:16] 2025-12-02 22:13:37,332 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 17:14:16] 2025-12-02 22:13:37,332 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 17:14:16] 2025-12-02 22:13:37,332 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 17:14:16] 2025-12-02 22:13:37,332 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 17:14:16] 2025-12-02 22:13:37,332 | INFO     | job 6901110319 has completed (purged errors)
[2025-12-02 17:14:16] 2025-12-02 22:13:37,333 | INFO     | overall cleanup function is called
[2025-12-02 17:14:16] 2025-12-02 22:13:38,378 | INFO     | --- collectZombieJob: --- 10, [3908524]
[2025-12-02 17:14:16] 2025-12-02 22:13:38,381 | INFO     | zombie collector waiting for pid 3908524
[2025-12-02 17:14:16] 2025-12-02 22:13:38,381 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 17:14:16] 2025-12-02 22:13:38,381 | INFO     | collected zombie processes
[2025-12-02 17:14:16] 2025-12-02 22:13:38,381 | INFO     | will attempt to kill all subprocesses of pid=3908524
[2025-12-02 17:14:16] 2025-12-02 22:13:42,565 | INFO     | process IDs to be killed: [3908524] (in reverse order)
[2025-12-02 17:14:16] 2025-12-02 22:13:43,013 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 17:14:16] 2025-12-02 22:13:43,013 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 17:14:16] 2025-12-02 22:13:43,141 | INFO     | did not find any defunct processes belonging to 3908524
[2025-12-02 17:14:16] 2025-12-02 22:13:43,327 | INFO     | did not find any defunct processes belonging to 3908524
[2025-12-02 17:14:16] 2025-12-02 22:13:43,335 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 17:14:16] 2025-12-02 22:13:43,335 | INFO     | ready for new job
[2025-12-02 17:14:16] 2025-12-02 22:13:43,335 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 17:14:16] 2025-12-02 22:13:43,338 | INFO     | ***************************************
[2025-12-02 17:14:16] 2025-12-02 22:13:43,338 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 17:14:16] 2025-12-02 22:13:43,338 | INFO     | ***************************************
[2025-12-02 17:14:16] 2025-12-02 22:13:43,338 | INFO     | 
[2025-12-02 17:14:16] 2025-12-02 22:13:43,347 | INFO     | architecture information:
[2025-12-02 17:14:16] 2025-12-02 22:13:43,351 | INFO     | executing command: cat /etc/os-release
[2025-12-02 17:14:16] 2025-12-02 22:13:43,414 | INFO     | cat /etc/os-release:
[2025-12-02 17:14:16] NAME="CentOS Linux"
[2025-12-02 17:14:16] VERSION="7 (Core)"
[2025-12-02 17:14:16] ID="centos"
[2025-12-02 17:14:16] ID_LIKE="rhel fedora"
[2025-12-02 17:14:16] VERSION_ID="7"
[2025-12-02 17:14:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 17:14:16] ANSI_COLOR="0;31"
[2025-12-02 17:14:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 17:14:16] HOME_URL="https://www.centos.org/"
[2025-12-02 17:14:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 17:14:16] 
[2025-12-02 17:14:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 17:14:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 17:14:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 17:14:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 17:14:16] 
[2025-12-02 17:14:16] 2025-12-02 22:13:43,415 | INFO     | ***************************************
[2025-12-02 17:14:16] 2025-12-02 22:13:43,921 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-12-02 17:14:16] 2025-12-02 22:13:43,987 | INFO     | sufficient remaining disk space (164292984832 B)
[2025-12-02 17:14:16] 2025-12-02 22:13:43,988 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 17:14:16] 2025-12-02 22:13:43,988 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 17:14:16] 2025-12-02 22:13:43,988 | INFO     | update_server=False
[2025-12-02 17:14:16] 2025-12-02 22:13:43,988 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 17:14:16] 2025-12-02 22:13:44,058 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 17:14:16] 2025-12-02 22:13:44,068 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 17:14:16] 2025-12-02 22:13:44,068 | INFO     | aborting loop
[2025-12-02 17:14:16] 2025-12-02 22:13:44,252 | INFO     | all data control threads have been joined
[2025-12-02 17:14:16] 2025-12-02 22:13:44,698 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 17:14:16] 2025-12-02 22:13:44,994 | INFO     | [job] retrieve thread has finished
[2025-12-02 17:14:16] 2025-12-02 22:13:45,054 | INFO     | all payload control threads have been joined
[2025-12-02 17:14:16] 2025-12-02 22:13:45,074 | INFO     | [job] job monitor thread has finished
[2025-12-02 17:14:16] 2025-12-02 22:13:45,092 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 17:14:16] 2025-12-02 22:13:45,259 | INFO     | [data] control thread has finished
[2025-12-02 17:14:16] 2025-12-02 22:13:45,365 | INFO     | all job control threads have been joined
[2025-12-02 17:14:16] 2025-12-02 22:13:45,629 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 17:14:16] 2025-12-02 22:13:45,672 | INFO     | [data] copytool_in thread has finished
[2025-12-02 17:14:16] 2025-12-02 22:13:45,700 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 17:14:16] 2025-12-02 22:13:45,766 | INFO     | [payload] failed_post thread has finished
[2025-12-02 17:14:16] 2025-12-02 22:13:45,780 | INFO     | [job] validate thread has finished
[2025-12-02 17:14:16] 2025-12-02 22:13:45,788 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 17:14:16] 2025-12-02 22:13:45,877 | INFO     | [payload] validate_post thread has finished
[2025-12-02 17:14:16] 2025-12-02 22:13:46,060 | INFO     | [payload] control thread has finished
[2025-12-02 17:14:16] 2025-12-02 22:13:46,121 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 17:14:16] 2025-12-02 22:13:46,373 | INFO     | [job] control thread has finished
[2025-12-02 17:14:16] 2025-12-02 22:13:46,729 | INFO     | [data] copytool_out thread has finished
[2025-12-02 17:14:16] 2025-12-02 22:13:47,132 | INFO     | [job] queue monitor thread has finished
[2025-12-02 17:14:16] 2025-12-02 22:13:47,150 | INFO     | [monitor] cgroup control has ended
[2025-12-02 17:14:16] 2025-12-02 22:13:48,076 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 17:14:16] 2025-12-02 22:13:48,177 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140697854748480)>', '<ExcThread(monitor, started 140697223034624)>']
[2025-12-02 17:14:16] 2025-12-02 22:13:53,203 | INFO     | all workflow threads have been joined
[2025-12-02 17:14:16] 2025-12-02 22:13:53,203 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 17:14:16] 2025-12-02 22:13:53,204 | INFO     | traces error code: 0
[2025-12-02 17:14:16] 2025-12-02 22:13:53,204 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 17:14:16] 2025-12-02 22:14:14,928 | INFO     | PID=3870180 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 17:14:16] 2025-12-02 22:14:14,950 | INFO     | .. there are 108 such processes running
[2025-12-02 17:14:16] 2025-12-02 22:14:14,950 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 17:14:16] 2025-12-02 22:14:14,951 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 17:14:16] 2025-12-02 22:14:14,951 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 17:14:16] 2025-12-02 22:14:14,951 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 17:14:16] 2025-12-02 22:14:14,951 | CRITICAL | thread 'MainThread' is not alive
[2025-12-02 17:14:16] 2025-12-02 22:14:14,951 | INFO     | [monitor] control thread has ended
[2025-12-02 17:14:16] 2025-12-02 22:14:15,457 [wrapper] ==== pilot stdout END ====
[2025-12-02 17:14:16] 2025-12-02 22:14:15,476 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 17:14:16] 2025-12-02 22:14:15,503 [wrapper] pilotpid: 3870180
[2025-12-02 17:14:16] 2025-12-02 22:14:15,533 [wrapper] Pilot exit status: 0
[2025-12-02 17:14:16] 2025-12-02 22:14:15,656 [wrapper] pandaids: 6901110319
[2025-12-02 17:14:16] 2025-12-02 22:14:15,954 [wrapper] cleanup supervisor_pilot 3518750 3870181
[2025-12-02 17:14:16] 2025-12-02 22:14:15,963 [wrapper] Test setup, not cleaning
[2025-12-02 17:14:16] 2025-12-02 22:14:15,967 [wrapper] apfmon messages muted
[2025-12-02 17:14:16] 2025-12-02 22:14:15,969 [wrapper] ==== wrapper stdout END ====
[2025-12-02 17:14:16] 2025-12-02 22:14:15,972 [wrapper] ==== wrapper stderr END ====
[2025-12-02 17:14:16]  *** Error codes and diagnostics ***
[2025-12-02 17:14:16]     "exeErrorCode": 0,
[2025-12-02 17:14:16]     "exeErrorDiag": "",
[2025-12-02 17:14:16]     "pilotErrorCode": 0,
[2025-12-02 17:14:16]     "pilotErrorDiag": "",
[2025-12-02 17:14:16]  *** Listing of results directory ***
[2025-12-02 17:14:16] total 1080408
[2025-12-02 17:14:16] -rw-r--r--. 1 boincer umatlas    576529 Nov 29 04:19 pilot3.tar.gz
[2025-12-02 17:14:16] -rw-r--r--. 1 boincer umatlas      5112 Nov 29 04:19 queuedata.json
[2025-12-02 17:14:16] -rwx------. 1 boincer umatlas     36292 Nov 29 04:19 runpilot2-wrapper.sh
[2025-12-02 17:14:16] -rw-r--r--. 1 boincer umatlas       100 Dec  2 04:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 17:14:16] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 04:38 run_atlas
[2025-12-02 17:14:16] -rw-r--r--. 1 boincer umatlas       105 Dec  2 04:38 job.xml
[2025-12-02 17:14:16] -rw-r--r--. 2 boincer umatlas 377028876 Dec  2 04:38 EVNT.47531050._000552.pool.root.1
[2025-12-02 17:14:16] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 04:38 start_atlas.sh
[2025-12-02 17:14:16] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 04:38 shared
[2025-12-02 17:14:16] -rw-r--r--. 2 boincer umatlas    590116 Dec  2 04:38 input.tar.gz
[2025-12-02 17:14:16] -rw-r--r--. 1 boincer umatlas         0 Dec  2 04:38 boinc_lockfile
[2025-12-02 17:14:16] -rw-r--r--. 1 boincer umatlas      2881 Dec  2 04:38 pandaJob.out
[2025-12-02 17:14:16] -rw-------. 1 boincer umatlas        57 Dec  2 04:38 setup.sh.local
[2025-12-02 17:14:16] -rw-------. 1 boincer umatlas    986791 Dec  2 04:40 agis_schedconf.cvmfs.json
[2025-12-02 17:14:16] drwx------. 5 boincer umatlas      4096 Dec  2 04:40 pilot3
[2025-12-02 17:14:16] -rw-r--r--. 1 boincer umatlas       533 Dec  2 16:54 boinc_task_state.xml
[2025-12-02 17:14:16] -rw-------. 1 boincer umatlas 711074847 Dec  2 17:12 HITS.47531058._001672.pool.root.1
[2025-12-02 17:14:16] -rw-------. 1 boincer umatlas      1050 Dec  2 17:12 memory_monitor_summary.json
[2025-12-02 17:14:16] -rw-r--r--. 1 boincer umatlas      7174 Dec  2 17:12 init_data.xml
[2025-12-02 17:14:16] -rw-------. 1 boincer umatlas   1516240 Dec  2 17:12 agis_ddmendpoints.agis.ALL.json
[2025-12-02 17:14:16] -rw-------. 1 boincer umatlas   1954659 Dec  2 17:12 log.47531058._001672.job.log.tgz.1
[2025-12-02 17:14:16] -rw-------. 1 boincer umatlas        95 Dec  2 17:13 pilot_heartbeat.json
[2025-12-02 17:14:16] -rw-------. 1 boincer umatlas     26296 Dec  2 17:13 heartbeat.json
[2025-12-02 17:14:16] -rw-r--r--. 1 boincer umatlas        29 Dec  2 17:14 wrapper_checkpoint.txt
[2025-12-02 17:14:16] -rw-------. 1 boincer umatlas       894 Dec  2 17:14 pilotlog.txt
[2025-12-02 17:14:16] -rw-------. 1 boincer umatlas   5186948 Dec  2 17:14 log.47531058._001672.job.log.1
[2025-12-02 17:14:16] -rw-------. 1 boincer umatlas       353 Dec  2 17:14 output.list
[2025-12-02 17:14:16] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 17:14 boinc_mmap_file
[2025-12-02 17:14:16] -rw-r--r--. 1 boincer umatlas       620 Dec  2 17:14 runtime_log
[2025-12-02 17:14:16] -rw-------. 1 boincer umatlas   7178240 Dec  2 17:14 result.tar.gz
[2025-12-02 17:14:16] -rw-------. 1 boincer umatlas       659 Dec  2 17:14 v44NDmxHWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9yOKDmQMk8em.diag
[2025-12-02 17:14:16] -rw-r--r--. 1 boincer umatlas      9338 Dec  2 17:14 runtime_log.err
[2025-12-02 17:14:16] -rw-r--r--. 1 boincer umatlas     21785 Dec  2 17:14 stderr.txt
[2025-12-02 17:14:16] HITS file was successfully produced:
[2025-12-02 17:14:16] -rw-------. 1 boincer umatlas 711074847 Dec  2 17:12 shared/HITS.pool.root.1
[2025-12-02 17:14:16]  *** Contents of shared directory: ***
[2025-12-02 17:14:16] total 1070224
[2025-12-02 17:14:16] -rw-r--r--. 2 boincer umatlas 377028876 Dec  2 04:38 ATLAS.root_0
[2025-12-02 17:14:16] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 04:38 start_atlas.sh
[2025-12-02 17:14:16] -rw-r--r--. 2 boincer umatlas    590116 Dec  2 04:38 input.tar.gz
[2025-12-02 17:14:16] -rw-------. 1 boincer umatlas 711074847 Dec  2 17:12 HITS.pool.root.1
[2025-12-02 17:14:16] -rw-------. 1 boincer umatlas   7178240 Dec  2 17:14 result.tar.gz
17:14:18 (3857290): run_atlas exited; CPU time 121345.477135
17:14:18 (3857290): called boinc_finish(0)

</stderr_txt>
]]>

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