Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-12-02 10:29:59 (24732): vboxwrapper version 26210
2025-12-02 10:29:59 (24732): BOINC client version: 8.0.2
2025-12-02 10:29:59 (24732): Detected: VirtualBox VboxManage Interface (Version: 7.0.12)
2025-12-02 10:30:00 (24732): Successfully copied 'init_data.xml' to the shared directory.
2025-12-02 10:30:00 (24732): Create VM. (boinc_3f991a7612e62e80, slot#1)
2025-12-02 10:30:00 (24732): Setting Memory Size for VM. (6200MB)
2025-12-02 10:30:01 (24732): Setting CPU Count for VM. (4)
2025-12-02 10:30:01 (24732): Setting Chipset Options for VM.
2025-12-02 10:30:01 (24732): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-12-02 10:30:01 (24732): Setting Boot Options for VM.
2025-12-02 10:30:02 (24732): Setting Network Configuration for NAT. (Driver: virtio)
2025-12-02 10:30:02 (24732): Enabling VM Network Access.
2025-12-02 10:30:02 (24732): Disabling USB Support for VM.
2025-12-02 10:30:03 (24732): Disabling COM Port Support for VM.
2025-12-02 10:30:03 (24732): Disabling LPT Port Support for VM.
2025-12-02 10:30:03 (24732): Disabling Audio Support for VM.
2025-12-02 10:30:03 (24732): Disabling Clipboard Support for VM.
2025-12-02 10:30:04 (24732): Disabling Drag and Drop Support for VM.
2025-12-02 10:30:04 (24732): Adding storage controller(s) to VM.
2025-12-02 10:30:04 (24732): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-12-02 10:30:05 (24732): Adding VirtualBox Guest Additions to VM.
2025-12-02 10:30:05 (24732): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-12-02 10:30:05 (24732): forwarding host port 52817 to guest port 80
2025-12-02 10:30:05 (24732): Enabling remote desktop for VM.
2025-12-02 10:30:06 (24732): Enabling shared directory for VM.
2025-12-02 10:30:07 (24732): Starting VM using VBoxManage interface. (boinc_3f991a7612e62e80, slot#1)
2025-12-02 10:30:12 (24732): Successfully started VM. (PID = '37976')
2025-12-02 10:30:12 (24732): Reporting VM Process ID to BOINC.
2025-12-02 10:30:12 (24732): Guest Log: BIOS: VirtualBox 7.0.12
2025-12-02 10:30:12 (24732): Guest Log: CPUID EDX: 0x178bfbff
2025-12-02 10:30:12 (24732): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-12-02 10:30:12 (24732): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-12-02 10:30:12 (24732): VM state change detected. (old = 'poweredoff', new = 'running')
2025-12-02 10:30:12 (24732): Detected: Web Application Enabled (http://localhost:52817)
2025-12-02 10:30:12 (24732): Detected: Remote Desktop Enabled (localhost:52818)
2025-12-02 10:30:12 (24732): Preference change detected
2025-12-02 10:30:12 (24732): Setting CPU throttle for VM. (100%)
2025-12-02 10:30:12 (24732): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2025-12-02 10:30:14 (24732): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-12-02 10:30:14 (24732): Guest Log: BIOS: Booting from Hard Disk...
2025-12-02 10:30:16 (24732): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-12-02 10:30:16 (24732): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-12-02 10:30:16 (24732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-12-02 10:30:20 (24732): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-12-02 10:30:20 (24732): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-12-02 10:30:23 (24732): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-12-02 10:30:23 (24732): Guest Log: 00:00:00.000092 main     Log opened 2025-12-02T10:30:21.888462000Z
2025-12-02 10:30:23 (24732): Guest Log: 00:00:00.000153 main     OS Product: Linux
2025-12-02 10:30:23 (24732): Guest Log: 00:00:00.000177 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-12-02 10:30:23 (24732): Guest Log: 00:00:00.000195 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-12-02 10:30:23 (24732): Guest Log: 00:00:00.000214 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-12-02 10:30:23 (24732): Guest Log: 00:00:00.000215 main     Process ID: 1360
2025-12-02 10:30:23 (24732): Guest Log: 00:00:00.000215 main     Package type: LINUX_64BITS_GENERIC
2025-12-02 10:30:23 (24732): Guest Log: 00:00:00.000970 main     5.2.32 r132073 started. Verbose level = 0
2025-12-02 10:30:24 (24732): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-12-02 10:30:24 (24732): Guest Log: [INFO] Mounting shared directory
2025-12-02 10:30:24 (24732): Guest Log: [INFO] Checking for init_data.xml
2025-12-02 10:30:33 (24732): Guest Log: 00:00:10.008041 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 341 726 000ns (GuestNow=1 764 667 833 548 329 000 ns GuestLast=1 764 671 421 890 055 000 ns fSetTimeLastLoop=true )
2025-12-02 10:30:46 (24732): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-12-02 10:30:46 (24732): Guest Log: [INFO] Detected branch: prod
2025-12-02 10:30:47 (24732): Guest Log: This is the prod version of the ATLAS job wrapper
2025-12-02 10:30:47 (24732): Guest Log: Copying input files
2025-12-02 10:30:48 (24732): Guest Log: Copied input files into RunAtlas.
2025-12-02 10:30:48 (24732): Guest Log: Detected user-configured HTTP proxy at http://192.168.0.39:3128 - will set in /etc/cvmfs/default.local
2025-12-02 10:30:55 (24732): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-12-02 10:30:55 (24732): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-12-02 10:30:55 (24732): Guest Log: 2.6.3.0 1638 0 31620 153550 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.39:3128 1
2025-12-02 10:30:56 (24732): Guest Log: copied the webapp to /var/www
2025-12-02 10:30:56 (24732): Guest Log: ATHENA_PROC_NUMBER=4
2025-12-02 10:30:56 (24732): Guest Log: ATHENA_CORE_NUMBER=4
2025-12-02 10:30:56 (24732): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-12-02 10:30:56 (24732): Guest Log:  *** Starting ATLAS job. (PandaID=6901292294 taskID=47531111) ***
2025-12-02 12:10:16 (24732): Status Report: Elapsed Time: '6000.000000'
2025-12-02 12:10:16 (24732): Status Report: CPU Time: '22971.703125'
2025-12-02 13:50:21 (24732): Status Report: Elapsed Time: '12000.000000'
2025-12-02 13:50:21 (24732): Status Report: CPU Time: '46895.218750'
2025-12-02 15:30:25 (24732): Status Report: Elapsed Time: '18000.000000'
2025-12-02 15:30:25 (24732): Status Report: CPU Time: '70816.593750'
2025-12-02 16:10:28 (24732): Guest Log:  *** Job finished ***
2025-12-02 16:10:28 (24732): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-12-02 16:10:28 (24732): Guest Log: 2025-12-02 15:10:14,265 | INFO     | all workflow threads have been joined
2025-12-02 16:10:28 (24732): Guest Log: 2025-12-02 15:10:14,265 | INFO     | end of generic workflow (traces error code: 0)
2025-12-02 16:10:28 (24732): Guest Log: 2025-12-02 15:10:14,265 | INFO     | traces error code: 0
2025-12-02 16:10:28 (24732): Guest Log: 2025-12-02 15:10:14,265 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-12-02 16:10:28 (24732): Guest Log: 2025-12-02 15:10:27,686 | INFO     | PID=6040 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-12-02 16:10:28 (24732): Guest Log: 2025-12-02 15:10:27,686 | INFO     | found 0 job(s) in 20 queues
2025-12-02 16:10:28 (24732): Guest Log: 2025-12-02 15:10:27,686 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-12-02 16:10:28 (24732): Guest Log: 2025-12-02 15:10:27,686 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-12-02 16:10:28 (24732): Guest Log: 2025-12-02 15:10:27,686 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-12-02 16:10:28 (24732): Guest Log: 2025-12-02 15:10:27,686 | INFO     | [monitor] control thread has ended
2025-12-02 16:10:28 (24732): Guest Log: 2025-12-02 15:10:27,731 [wrapper] ==== pilot stdout END ====
2025-12-02 16:10:28 (24732): Guest Log: 2025-12-02 15:10:27,734 [wrapper] ==== wrapper stdout RESUME ====
2025-12-02 16:10:28 (24732): Guest Log: 2025-12-02 15:10:27,736 [wrapper] pilotpid: 6040
2025-12-02 16:10:28 (24732): Guest Log: 2025-12-02 15:10:27,739 [wrapper] Pilot exit status: 0
2025-12-02 16:10:28 (24732): Guest Log: 2025-12-02 15:10:27,747 [wrapper] pandaids: 6901292294
2025-12-02 16:10:28 (24732): Guest Log: 2025-12-02 15:10:27,766 [wrapper] cleanup supervisor_pilot 25499 6041
2025-12-02 16:10:28 (24732): Guest Log: 2025-12-02 15:10:27,769 [wrapper] Test setup, not cleaning
2025-12-02 16:10:28 (24732): Guest Log: 2025-12-02 15:10:27,773 [wrapper] apfmon messages muted
2025-12-02 16:10:28 (24732): Guest Log: 2025-12-02 15:10:27,776 [wrapper] ==== wrapper stdout END ====
2025-12-02 16:10:28 (24732): Guest Log: 2025-12-02 15:10:27,778 [wrapper] ==== wrapper stderr END ====
2025-12-02 16:10:28 (24732): Guest Log:  *** Error codes and diagnostics ***
2025-12-02 16:10:28 (24732): Guest Log:     "exeErrorCode": 0,
2025-12-02 16:10:28 (24732): Guest Log:     "exeErrorDiag": "",
2025-12-02 16:10:28 (24732): Guest Log:     "pilotErrorCode": 0,
2025-12-02 16:10:28 (24732): Guest Log:     "pilotErrorDiag": "",
2025-12-02 16:10:28 (24732): Guest Log:  *** Listing of results directory ***
2025-12-02 16:10:28 (24732): Guest Log: total 682156
2025-12-02 16:10:28 (24732): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 29 09:19 pilot3.tar.gz
2025-12-02 16:10:28 (24732): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 29 09:19 runpilot2-wrapper.sh
2025-12-02 16:10:28 (24732): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 29 09:22 queuedata.json
2025-12-02 16:10:28 (24732): Guest Log: -rwxr-xr-x. 1 atlas atlas      9331 Dec  2 09:30 init_data.xml
2025-12-02 16:10:28 (24732): Guest Log: -rwxr-xr-x. 1 atlas atlas    590117 Dec  2 09:30 input.tar.gz
2025-12-02 16:10:28 (24732): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Dec  2 09:30 start_atlas.sh
2025-12-02 16:10:28 (24732): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Dec  2 09:30 EVNT.47531104._000091.pool.root.1 -> /data/./ATLAS.root_0
2025-12-02 16:10:28 (24732): Guest Log: -rw-r--r--. 1 atlas atlas      2879 Dec  2 09:30 pandaJob.out
2025-12-02 16:10:28 (24732): Guest Log: -rw-------. 1 atlas atlas        49 Dec  2 09:31 setup.sh.local
2025-12-02 16:10:28 (24732): Guest Log: -rw-------. 1 atlas atlas    986791 Dec  2 09:31 agis_schedconf.cvmfs.json
2025-12-02 16:10:28 (24732): Guest Log: drwx------. 5 atlas atlas      4096 Dec  2 09:31 pilot3
2025-12-02 16:10:28 (24732): Guest Log: -rw-------. 1 atlas atlas 686662870 Dec  2 15:09 HITS.47531111._000892.pool.root.1
2025-12-02 16:10:28 (24732): Guest Log: -rw-------. 1 atlas atlas      1036 Dec  2 15:09 memory_monitor_summary.json
2025-12-02 16:10:28 (24732): Guest Log: -rw-------. 1 atlas atlas   1516240 Dec  2 15:09 agis_ddmendpoints.agis.ALL.json
2025-12-02 16:10:28 (24732): Guest Log: -rw-------. 1 atlas atlas   1280470 Dec  2 15:09 log.47531111._000892.job.log.tgz.1
2025-12-02 16:10:28 (24732): Guest Log: -rw-------. 1 atlas atlas     28382 Dec  2 15:09 heartbeat.json
2025-12-02 16:10:28 (24732): Guest Log: -rw-------. 1 atlas atlas       744 Dec  2 15:10 pilotlog.txt
2025-12-02 16:10:28 (24732): Guest Log: -rw-------. 1 atlas atlas        95 Dec  2 15:10 pilot_heartbeat.json
2025-12-02 16:10:28 (24732): Guest Log: -rw-------. 1 atlas atlas   2712402 Dec  2 15:10 log.47531111._000892.job.log.1
2025-12-02 16:10:28 (24732): Guest Log: -rw-------. 1 atlas atlas       353 Dec  2 15:10 output.list
2025-12-02 16:10:28 (24732): Guest Log: -rw-r--r--. 1 atlas atlas       620 Dec  2 15:10 runtime_log
2025-12-02 16:10:28 (24732): Guest Log: -rw-------. 1 atlas atlas   4034560 Dec  2 15:10 result.tar.gz
2025-12-02 16:10:28 (24732): Guest Log: -rw-r--r--. 1 atlas atlas      9210 Dec  2 15:10 runtime_log.err
2025-12-02 16:10:28 (24732): Guest Log: -rw-------. 1 atlas atlas       652 Dec  2 15:10 0aqLDmLIWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmv2OKDm6tL9Zm.diag
2025-12-02 16:10:28 (24732): Guest Log: Looking for outputfile HITS.47531111._000892.pool.root.1
2025-12-02 16:10:28 (24732): Guest Log: HITS file was successfully produced
2025-12-02 16:10:28 (24732): Guest Log: -rw-------. 1 atlas atlas 686662870 Dec  2 15:09 /home/atlas/RunAtlas/HITS.47531111._000892.pool.root.1
2025-12-02 16:10:30 (24732): Guest Log: Successfully finished the ATLAS job!
2025-12-02 16:10:30 (24732): Guest Log: Copying the results back to the shared directory!
2025-12-02 16:10:30 (24732): Guest Log:  *** Contents of shared directory: ***
2025-12-02 16:10:30 (24732): Guest Log: total 1040290
2025-12-02 16:10:30 (24732): Guest Log: -rwxrwxrwx. 1 root root 373940732 Dec  2 09:29 ATLAS.root_0
2025-12-02 16:10:30 (24732): Guest Log: -rwxrwxrwx. 1 root root 686662870 Dec  2 15:10 HITS.pool.root.1
2025-12-02 16:10:30 (24732): Guest Log: -rwxrwxrwx. 1 root root      9331 Dec  2 09:29 init_data.xml
2025-12-02 16:10:30 (24732): Guest Log: -rwxrwxrwx. 1 root root    590117 Dec  2 09:29 input.tar.gz
2025-12-02 16:10:30 (24732): Guest Log: -rwxrwxrwx. 1 root root   4034560 Dec  2 15:10 result.tar.gz
2025-12-02 16:10:30 (24732): Guest Log: -rwxrwxrwx. 1 root root     15847 Dec  2 09:29 start_atlas.sh
2025-12-02 16:10:30 (24732): Guest Log:  *** Success! Shutting down the machine. ***
2025-12-02 16:10:30 (24732): VM Completion File Detected.
2025-12-02 16:10:30 (24732): Powering off VM.
2025-12-02 16:10:31 (24732): Successfully stopped VM.
2025-12-02 16:10:31 (24732): Deregistering VM. (boinc_3f991a7612e62e80, slot#1)
2025-12-02 16:10:31 (24732): Removing network bandwidth throttle group from VM.
2025-12-02 16:10:31 (24732): Removing VM from VirtualBox.
2025-12-02 16:10:36 (24732): called boinc_finish(0)

</stderr_txt>
]]>

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