Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:39:44 (3484858): wrapper (7.7.26015): starting
03:39:44 (3484858): wrapper: running run_atlas (--nthreads 11)
[2025-12-02 03:39:44] Arguments: --nthreads 11
[2025-12-02 03:39:44] Threads: 11
[2025-12-02 03:39:44] Checking for CVMFS
[2025-12-02 03:39:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 03:39:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 03:39:44] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 03:39:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 03:39:45] 2.13.3.0 14328 38439 269688 153549 1 355 30268953 40960000 46716 16776704 0 487067986 99.722 353533501 48990 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 03:39:45] CVMFS is ok
[2025-12-02 03:39:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 03:39:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 03:39:45] Further information can be found at the LHC@home message board.
[2025-12-02 03:39:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 03:39:45] Checking for apptainer binary...
[2025-12-02 03:39:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 03:39:45] Running /usr/bin/apptainer --version
[2025-12-02 03:39:45] apptainer version 1.4.4-1.el9
[2025-12-02 03:39:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 03:39:45] c8-16-2.aglt2.org
[2025-12-02 03:39:45] apptainer works
[2025-12-02 03:39:45] Set ATHENA_PROC_NUMBER=11
[2025-12-02 03:39:45] Set ATHENA_CORE_NUMBER=11
[2025-12-02 03:39:45] Starting ATLAS job with PandaID=6893858953
[2025-12-02 03:39:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 14:15:45]  *** The last 200 lines of the pilot log: ***
[2025-12-02 14:15:45] 2025-12-02 19:14:55,203 | INFO     | .. there are 113 such processes running
[2025-12-02 14:15:45] 2025-12-02 19:14:55,991 | INFO     | monitor loop #1895: job 0:6893858953 is in state 'finished'
[2025-12-02 14:15:45] 2025-12-02 19:14:55,991 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 14:15:45] 2025-12-02 19:14:56,203 | INFO     | time since job start (38076s) is within the limit (172800.0s)
[2025-12-02 14:15:45] 2025-12-02 19:14:58,227 | INFO     | time since job start (38078s) is within the limit (172800.0s)
[2025-12-02 14:15:45] 2025-12-02 19:14:58,504 | INFO     | monitor loop #1896: job 0:6893858953 is in state 'finished'
[2025-12-02 14:15:45] 2025-12-02 19:14:58,504 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 14:15:45] 2025-12-02 19:15:00,234 | INFO     | time since job start (38080s) is within the limit (172800.0s)
[2025-12-02 14:15:45] 2025-12-02 19:15:01,022 | INFO     | monitor loop #1897: job 0:6893858953 is in state 'finished'
[2025-12-02 14:15:45] 2025-12-02 19:15:01,022 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 14:15:45] 2025-12-02 19:15:02,240 | INFO     | time since job start (38082s) is within the limit (172800.0s)
[2025-12-02 14:15:45] 2025-12-02 19:15:03,544 | INFO     | monitor loop #1898: job 0:6893858953 is in state 'finished'
[2025-12-02 14:15:45] 2025-12-02 19:15:03,544 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 14:15:45] 2025-12-02 19:15:04,256 | INFO     | time since job start (38084s) is within the limit (172800.0s)
[2025-12-02 14:15:45] 2025-12-02 19:15:05,783 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 14:15:45] 2025-12-02 19:15:05,805 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.0253437499982
[2025-12-02 14:15:45] 2025-12-02 19:15:05,873 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893858953/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 14:15:45] 2025-12-02 19:15:05,874 | INFO     | extracted standard info from prmon json
[2025-12-02 14:15:45] 2025-12-02 19:15:05,896 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 14:15:45] 2025-12-02 19:15:05,896 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 14:15:45] 2025-12-02 19:15:05,967 | INFO     | fitting pss+swap vs Time
[2025-12-02 14:15:45] 2025-12-02 19:15:05,968 | INFO     | sum of square deviations: 74968293082.06421
[2025-12-02 14:15:45] 2025-12-02 19:15:05,992 | INFO     | sum of deviations: -281451837356.8277
[2025-12-02 14:15:45] 2025-12-02 19:15:05,992 | INFO     | mean x: 1764683867.7030497
[2025-12-02 14:15:45] 2025-12-02 19:15:05,992 | INFO     | mean y: 3291254.330658106
[2025-12-02 14:15:45] 2025-12-02 19:15:05,992 | INFO     | intersect: 6628405639.358627
[2025-12-02 14:15:45] 2025-12-02 19:15:05,992 | INFO     | chi2: 20.449420932928263
[2025-12-02 14:15:45] 2025-12-02 19:15:05,993 | INFO     | sum of square deviations: 73177973087.73611
[2025-12-02 14:15:45] 2025-12-02 19:15:06,001 | INFO     | sum of deviations: -40703384042.84478
[2025-12-02 14:15:45] 2025-12-02 19:15:06,002 | INFO     | mean x: 1764683715.224919
[2025-12-02 14:15:45] 2025-12-02 19:15:06,002 | INFO     | mean y: 3311752.1067961166
[2025-12-02 14:15:45] 2025-12-02 19:15:06,002 | INFO     | intersect: 984872130.7857152
[2025-12-02 14:15:45] 2025-12-02 19:15:06,002 | INFO     | chi2: 16.820159295090612
[2025-12-02 14:15:45] 2025-12-02 19:15:06,002 | INFO     | current chi2=16.820159295090612 (change=17.747503216551753 %)
[2025-12-02 14:15:45] 2025-12-02 19:15:06,002 | INFO     | right removable region: 617
[2025-12-02 14:15:45] 2025-12-02 19:15:06,002 | INFO     | sum of square deviations: 73176945847.73616
[2025-12-02 14:15:45] 2025-12-02 19:15:06,034 | INFO     | sum of deviations: -489966275928.11633
[2025-12-02 14:15:45] 2025-12-02 19:15:06,034 | INFO     | mean x: 1764684020.224919
[2025-12-02 14:15:45] 2025-12-02 19:15:06,034 | INFO     | mean y: 3308976.669902913
[2025-12-02 14:15:45] 2025-12-02 19:15:06,034 | INFO     | intersect: 11818992831.234724
[2025-12-02 14:15:45] 2025-12-02 19:15:06,034 | INFO     | chi2: 18.063127103622396
[2025-12-02 14:15:45] 2025-12-02 19:15:06,034 | INFO     | current chi2=18.063127103622396 (change=11.669248909945347 %)
[2025-12-02 14:15:45] 2025-12-02 19:15:06,034 | INFO     | left removable region: 10
[2025-12-02 14:15:45] 2025-12-02 19:15:06,035 | INFO     | sum of square deviations: 69338404374.88277
[2025-12-02 14:15:45] 2025-12-02 19:15:06,043 | INFO     | sum of deviations: -233673167985.10043
[2025-12-02 14:15:45] 2025-12-02 19:15:06,043 | INFO     | mean x: 1764683989.7594728
[2025-12-02 14:15:45] 2025-12-02 19:15:06,043 | INFO     | mean y: 3337497.060955519
[2025-12-02 14:15:45] 2025-12-02 19:15:06,043 | INFO     | intersect: 5950392409.807925
[2025-12-02 14:15:45] 2025-12-02 19:15:06,043 | INFO     | chi2: 13.536374511761714
[2025-12-02 14:15:45] 2025-12-02 19:15:06,043 | INFO     | current memory leak: -3.37 B/s (using 607 data points, chi2=13.54)
[2025-12-02 14:15:45] 2025-12-02 19:15:06,044 | INFO     | could have reported an average CPU frequency of 3800 MHz (24 samples)
[2025-12-02 14:15:45] 2025-12-02 19:15:06,044 | INFO     | ..............................
[2025-12-02 14:15:45] 2025-12-02 19:15:06,044 | INFO     | . Timing measurements:
[2025-12-02 14:15:45] 2025-12-02 19:15:06,044 | INFO     | . get job = 0 s
[2025-12-02 14:15:45] 2025-12-02 19:15:06,044 | INFO     | . initial setup = 2 s
[2025-12-02 14:15:45] 2025-12-02 19:15:06,044 | INFO     | . payload setup = 21 s
[2025-12-02 14:15:45] 2025-12-02 19:15:06,044 | INFO     | . stage-in = 0 s
[2025-12-02 14:15:45] 2025-12-02 19:15:06,044 | INFO     | . payload execution = 37967 s
[2025-12-02 14:15:45] 2025-12-02 19:15:06,044 | INFO     | . stage-out = 7 s
[2025-12-02 14:15:45] 2025-12-02 19:15:06,044 | INFO     | . log creation = 1 s
[2025-12-02 14:15:45] 2025-12-02 19:15:06,044 | INFO     | ..............................
[2025-12-02 14:15:45] 2025-12-02 19:15:06,245 | INFO     | 
[2025-12-02 14:15:45] 2025-12-02 19:15:06,245 | INFO     | job summary report
[2025-12-02 14:15:45] 2025-12-02 19:15:06,245 | INFO     | --------------------------------------------------
[2025-12-02 14:15:45] 2025-12-02 19:15:06,245 | INFO     | PanDA job id: 6893858953
[2025-12-02 14:15:45] 2025-12-02 19:15:06,245 | INFO     | task id: 47523449
[2025-12-02 14:15:45] 2025-12-02 19:15:06,245 | INFO     | errors: (none)
[2025-12-02 14:15:45] 2025-12-02 19:15:06,245 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 14:15:45] 2025-12-02 19:15:06,245 | INFO     | pilot state: finished 
[2025-12-02 14:15:45] 2025-12-02 19:15:06,245 | INFO     | transexitcode: 0
[2025-12-02 14:15:45] 2025-12-02 19:15:06,246 | INFO     | exeerrorcode: 0
[2025-12-02 14:15:45] 2025-12-02 19:15:06,246 | INFO     | exeerrordiag: 
[2025-12-02 14:15:45] 2025-12-02 19:15:06,246 | INFO     | exitcode: 0
[2025-12-02 14:15:45] 2025-12-02 19:15:06,246 | INFO     | exitmsg: OK
[2025-12-02 14:15:45] 2025-12-02 19:15:06,246 | INFO     | cpuconsumptiontime: 133273 s
[2025-12-02 14:15:45] 2025-12-02 19:15:06,246 | INFO     | nevents: 1000
[2025-12-02 14:15:45] 2025-12-02 19:15:06,246 | INFO     | neventsw: 0
[2025-12-02 14:15:45] 2025-12-02 19:15:06,246 | INFO     | pid: 3503057
[2025-12-02 14:15:45] 2025-12-02 19:15:06,246 | INFO     | pgrp: 3503057
[2025-12-02 14:15:45] 2025-12-02 19:15:06,246 | INFO     | corecount: 11
[2025-12-02 14:15:45] 2025-12-02 19:15:06,246 | INFO     | event service: False
[2025-12-02 14:15:45] 2025-12-02 19:15:06,246 | INFO     | sizes: {0: 2284144, 1: 2284343, 12: 2284343, 13: 2284633, 23: 2284689, 37994: 2326589, 38002: 2335583, 38003: 2335639, 38048: 2335885}
[2025-12-02 14:15:45] 2025-12-02 19:15:06,246 | INFO     | --------------------------------------------------
[2025-12-02 14:15:45] 2025-12-02 19:15:06,246 | INFO     | 
[2025-12-02 14:15:45] 2025-12-02 19:15:06,246 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-02 14:15:45] 2025-12-02 19:15:06,267 | INFO     | time since job start (38086s) is within the limit (172800.0s)
[2025-12-02 14:15:45] 2025-12-02 19:15:06,436 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 14:15:45] 2025-12-02 19:15:06,436 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 14:15:45] 2025-12-02 19:15:06,436 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 14:15:45] 2025-12-02 19:15:06,437 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 14:15:45] 2025-12-02 19:15:06,437 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 14:15:45] 2025-12-02 19:15:06,437 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 14:15:45] 2025-12-02 19:15:06,437 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 14:15:45] 2025-12-02 19:15:06,437 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 14:15:45] 2025-12-02 19:15:06,437 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 14:15:45] 2025-12-02 19:15:06,437 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 14:15:45] 2025-12-02 19:15:06,437 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 14:15:45] 2025-12-02 19:15:06,437 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 14:15:45] 2025-12-02 19:15:06,437 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 14:15:45] 2025-12-02 19:15:06,437 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 14:15:45] 2025-12-02 19:15:06,437 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 14:15:45] 2025-12-02 19:15:06,437 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 14:15:45] 2025-12-02 19:15:06,437 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 14:15:45] 2025-12-02 19:15:06,437 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 14:15:45] 2025-12-02 19:15:06,437 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 14:15:45] 2025-12-02 19:15:06,437 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 14:15:45] 2025-12-02 19:15:06,446 | INFO     | job 6893858953 has completed (purged errors)
[2025-12-02 14:15:45] 2025-12-02 19:15:06,446 | INFO     | overall cleanup function is called
[2025-12-02 14:15:45] 2025-12-02 19:15:07,495 | INFO     | --- collectZombieJob: --- 10, [3503057]
[2025-12-02 14:15:45] 2025-12-02 19:15:07,495 | INFO     | zombie collector waiting for pid 3503057
[2025-12-02 14:15:45] 2025-12-02 19:15:07,495 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 14:15:45] 2025-12-02 19:15:07,495 | INFO     | collected zombie processes
[2025-12-02 14:15:45] 2025-12-02 19:15:07,495 | INFO     | will attempt to kill all subprocesses of pid=3503057
[2025-12-02 14:15:45] 2025-12-02 19:15:09,244 | INFO     | process IDs to be killed: [3503057] (in reverse order)
[2025-12-02 14:15:45] 2025-12-02 19:15:09,715 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 14:15:45] 2025-12-02 19:15:09,716 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 14:15:45] 2025-12-02 19:15:09,833 | INFO     | did not find any defunct processes belonging to 3503057
[2025-12-02 14:15:45] 2025-12-02 19:15:09,965 | INFO     | did not find any defunct processes belonging to 3503057
[2025-12-02 14:15:45] 2025-12-02 19:15:09,988 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 14:15:45] 2025-12-02 19:15:09,988 | INFO     | ready for new job
[2025-12-02 14:15:45] 2025-12-02 19:15:09,988 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 14:15:45] 2025-12-02 19:15:09,990 | INFO     | ***************************************
[2025-12-02 14:15:45] 2025-12-02 19:15:09,990 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 14:15:45] 2025-12-02 19:15:09,991 | INFO     | ***************************************
[2025-12-02 14:15:45] 2025-12-02 19:15:09,991 | INFO     | 
[2025-12-02 14:15:45] 2025-12-02 19:15:10,005 | INFO     | architecture information:
[2025-12-02 14:15:45] 2025-12-02 19:15:10,031 | INFO     | executing command: cat /etc/os-release
[2025-12-02 14:15:45] 2025-12-02 19:15:10,098 | INFO     | cat /etc/os-release:
[2025-12-02 14:15:45] NAME="CentOS Linux"
[2025-12-02 14:15:45] VERSION="7 (Core)"
[2025-12-02 14:15:45] ID="centos"
[2025-12-02 14:15:45] ID_LIKE="rhel fedora"
[2025-12-02 14:15:45] VERSION_ID="7"
[2025-12-02 14:15:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 14:15:45] ANSI_COLOR="0;31"
[2025-12-02 14:15:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 14:15:45] HOME_URL="https://www.centos.org/"
[2025-12-02 14:15:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 14:15:45] 
[2025-12-02 14:15:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 14:15:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 14:15:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 14:15:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 14:15:45] 
[2025-12-02 14:15:45] 2025-12-02 19:15:10,098 | INFO     | ***************************************
[2025-12-02 14:15:45] 2025-12-02 19:15:10,602 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-02 14:15:45] 2025-12-02 19:15:10,737 | INFO     | sufficient remaining disk space (165270257664 B)
[2025-12-02 14:15:45] 2025-12-02 19:15:10,737 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 14:15:45] 2025-12-02 19:15:10,737 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 14:15:45] 2025-12-02 19:15:10,737 | INFO     | update_server=False
[2025-12-02 14:15:45] 2025-12-02 19:15:10,737 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 14:15:45] 2025-12-02 19:15:10,737 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 14:15:45] 2025-12-02 19:15:11,137 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-02 14:15:45] 2025-12-02 19:15:11,137 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-02 14:15:45] 2025-12-02 19:15:11,137 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 14:15:45] 2025-12-02 19:15:11,138 | INFO     | will abort loop
[2025-12-02 14:15:45] 2025-12-02 19:15:11,237 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 14:15:45] 2025-12-02 19:15:11,371 | INFO     | all payload control threads have been joined
[2025-12-02 14:15:45] 2025-12-02 19:15:11,626 | INFO     | all data control threads have been joined
[2025-12-02 14:15:45] 2025-12-02 19:15:11,724 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 14:15:45] 2025-12-02 19:15:11,743 | INFO     | [job] retrieve thread has finished
[2025-12-02 14:15:45] 2025-12-02 19:15:11,837 | INFO     | [data] copytool_in thread has finished
[2025-12-02 14:15:45] 2025-12-02 19:15:12,143 | INFO     | [job] job monitor thread has finished
[2025-12-02 14:15:45] 2025-12-02 19:15:12,170 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 14:15:45] 2025-12-02 19:15:12,243 | INFO     | [job] queue monitor thread has finished
[2025-12-02 14:15:45] 2025-12-02 19:15:12,299 | INFO     | all job control threads have been joined
[2025-12-02 14:15:45] 2025-12-02 19:15:12,347 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 14:15:45] 2025-12-02 19:15:12,378 | INFO     | [payload] control thread has finished
[2025-12-02 14:15:45] 2025-12-02 19:15:12,504 | INFO     | [payload] failed_post thread has finished
[2025-12-02 14:15:45] 2025-12-02 19:15:12,632 | INFO     | [data] control thread has finished
[2025-12-02 14:15:45] 2025-12-02 19:15:12,668 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 14:15:45] 2025-12-02 19:15:12,701 | INFO     | [job] validate thread has finished
[2025-12-02 14:15:45] 2025-12-02 19:15:12,744 | INFO     | [data] copytool_out thread has finished
[2025-12-02 14:15:45] 2025-12-02 19:15:12,981 | INFO     | [payload] validate_post thread has finished
[2025-12-02 14:15:45] 2025-12-02 19:15:13,238 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 14:15:45] 2025-12-02 19:15:13,305 | INFO     | [job] control thread has finished
[2025-12-02 14:15:45] 2025-12-02 19:15:15,733 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 14:15:45] 2025-12-02 19:15:28,742 | INFO     | [monitor] cgroup control has ended
[2025-12-02 14:15:45] 2025-12-02 19:15:29,081 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139653328402240)>', '<ExcThread(monitor, started 139652455454464)>']
[2025-12-02 14:15:45] 2025-12-02 19:15:34,108 | INFO     | all workflow threads have been joined
[2025-12-02 14:15:45] 2025-12-02 19:15:34,108 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 14:15:45] 2025-12-02 19:15:34,109 | INFO     | traces error code: 0
[2025-12-02 14:15:45] 2025-12-02 19:15:34,109 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 14:15:45] 2025-12-02 19:15:41,933 | INFO     | PID=3491660 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 14:15:45] 2025-12-02 19:15:41,933 | INFO     | .. there are 113 such processes running
[2025-12-02 14:15:45] 2025-12-02 19:15:41,933 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 14:15:45] 2025-12-02 19:15:41,934 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 14:15:45] 2025-12-02 19:15:41,934 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 14:15:45] 2025-12-02 19:15:41,934 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 14:15:45] 2025-12-02 19:15:41,934 | INFO     | [monitor] control thread has ended
[2025-12-02 14:15:45] 2025-12-02 19:15:43,270 [wrapper] ==== pilot stdout END ====
[2025-12-02 14:15:45] 2025-12-02 19:15:43,292 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 14:15:45] 2025-12-02 19:15:43,309 [wrapper] pilotpid: 3491660
[2025-12-02 14:15:45] 2025-12-02 19:15:43,334 [wrapper] Pilot exit status: 0
[2025-12-02 14:15:45] 2025-12-02 19:15:43,476 [wrapper] pandaids: 6893858953
[2025-12-02 14:15:45] 2025-12-02 19:15:43,997 [wrapper] cleanup supervisor_pilot 1446684 3491661
[2025-12-02 14:15:45] 2025-12-02 19:15:44,061 [wrapper] Test setup, not cleaning
[2025-12-02 14:15:45] 2025-12-02 19:15:44,112 [wrapper] apfmon messages muted
[2025-12-02 14:15:45] 2025-12-02 19:15:44,175 [wrapper] ==== wrapper stdout END ====
[2025-12-02 14:15:45] 2025-12-02 19:15:44,216 [wrapper] ==== wrapper stderr END ====
[2025-12-02 14:15:45]  *** Error codes and diagnostics ***
[2025-12-02 14:15:45]     "exeErrorCode": 0,
[2025-12-02 14:15:45]     "exeErrorDiag": "",
[2025-12-02 14:15:45]     "pilotErrorCode": 0,
[2025-12-02 14:15:45]     "pilotErrorDiag": "",
[2025-12-02 14:15:45]  *** Listing of results directory ***
[2025-12-02 14:15:45] total 1301932
[2025-12-02 14:15:45] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 08:12 pilot3.tar.gz
[2025-12-02 14:15:45] -rwx------. 1 boincer umatlas     36292 Nov 20 08:25 runpilot2-wrapper.sh
[2025-12-02 14:15:45] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 08:25 queuedata.json
[2025-12-02 14:15:45] -rw-r--r--. 1 boincer umatlas       100 Dec  2 03:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 14:15:45] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 03:39 run_atlas
[2025-12-02 14:15:45] -rw-r--r--. 1 boincer umatlas       105 Dec  2 03:39 job.xml
[2025-12-02 14:15:45] -rw-r--r--. 2 boincer umatlas 410078541 Dec  2 03:39 EVNT.47493127._000521.pool.root.1
[2025-12-02 14:15:45] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 03:39 start_atlas.sh
[2025-12-02 14:15:45] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 03:39 shared
[2025-12-02 14:15:45] -rw-r--r--. 2 boincer umatlas    590098 Dec  2 03:39 input.tar.gz
[2025-12-02 14:15:45] -rw-r--r--. 1 boincer umatlas         0 Dec  2 03:39 boinc_lockfile
[2025-12-02 14:15:45] -rw-r--r--. 1 boincer umatlas      2786 Dec  2 03:39 pandaJob.out
[2025-12-02 14:15:45] -rw-------. 1 boincer umatlas        57 Dec  2 03:39 setup.sh.local
[2025-12-02 14:15:45] -rw-------. 1 boincer umatlas    990249 Dec  2 03:40 agis_schedconf.cvmfs.json
[2025-12-02 14:15:45] drwx------. 5 boincer umatlas      4096 Dec  2 03:40 pilot3
[2025-12-02 14:15:45] -rw-r--r--. 1 boincer umatlas       533 Dec  2 13:48 boinc_task_state.xml
[2025-12-02 14:15:45] -rw-r--r--. 1 boincer umatlas      7174 Dec  2 14:11 init_data.xml
[2025-12-02 14:15:45] -rw-------. 1 boincer umatlas 906305649 Dec  2 14:13 HITS.47523449._005204.pool.root.1
[2025-12-02 14:15:45] -rw-------. 1 boincer umatlas      1050 Dec  2 14:14 memory_monitor_summary.json
[2025-12-02 14:15:45] -rw-------. 1 boincer umatlas   1516240 Dec  2 14:14 agis_ddmendpoints.agis.ALL.json
[2025-12-02 14:15:45] -rw-------. 1 boincer umatlas   2120388 Dec  2 14:14 log.47523449._005204.job.log.tgz.1
[2025-12-02 14:15:45] -rw-------. 1 boincer umatlas      8587 Dec  2 14:15 heartbeat.json
[2025-12-02 14:15:45] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 14:15 boinc_mmap_file
[2025-12-02 14:15:45] -rw-r--r--. 1 boincer umatlas        29 Dec  2 14:15 wrapper_checkpoint.txt
[2025-12-02 14:15:45] -rw-------. 1 boincer umatlas       824 Dec  2 14:15 pilotlog.txt
[2025-12-02 14:15:45] -rw-------. 1 boincer umatlas        95 Dec  2 14:15 pilot_heartbeat.json
[2025-12-02 14:15:45] -rw-------. 1 boincer umatlas   4316397 Dec  2 14:15 log.47523449._005204.job.log.1
[2025-12-02 14:15:45] -rw-------. 1 boincer umatlas       353 Dec  2 14:15 output.list
[2025-12-02 14:15:45] -rw-r--r--. 1 boincer umatlas       620 Dec  2 14:15 runtime_log
[2025-12-02 14:15:45] -rw-------. 1 boincer umatlas   6461440 Dec  2 14:15 result.tar.gz
[2025-12-02 14:15:45] -rw-r--r--. 1 boincer umatlas      9340 Dec  2 14:15 runtime_log.err
[2025-12-02 14:15:45] -rw-------. 1 boincer umatlas       659 Dec  2 14:15 RtTLDm4pJg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZvHKDmuxk4Pm.diag
[2025-12-02 14:15:45] -rw-r--r--. 1 boincer umatlas     21501 Dec  2 14:15 stderr.txt
[2025-12-02 14:15:45] HITS file was successfully produced:
[2025-12-02 14:15:45] -rw-------. 1 boincer umatlas 906305649 Dec  2 14:13 shared/HITS.pool.root.1
[2025-12-02 14:15:45]  *** Contents of shared directory: ***
[2025-12-02 14:15:45] total 1292452
[2025-12-02 14:15:45] -rw-r--r--. 2 boincer umatlas 410078541 Dec  2 03:39 ATLAS.root_0
[2025-12-02 14:15:45] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 03:39 start_atlas.sh
[2025-12-02 14:15:45] -rw-r--r--. 2 boincer umatlas    590098 Dec  2 03:39 input.tar.gz
[2025-12-02 14:15:45] -rw-------. 1 boincer umatlas 906305649 Dec  2 14:13 HITS.pool.root.1
[2025-12-02 14:15:45] -rw-------. 1 boincer umatlas   6461440 Dec  2 14:15 result.tar.gz
14:15:46 (3484858): run_atlas exited; CPU time 133711.823765
14:15:46 (3484858): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN