Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:25:41 (1309298): wrapper (7.7.26015): starting
04:25:41 (1309298): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 04:25:41] Arguments: --nthreads 8
[2025-12-02 04:25:41] Threads: 8
[2025-12-02 04:25:41] Checking for CVMFS
[2025-12-02 04:25:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 04:25:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 04:25:42] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 04:25:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 04:25:43] 2.13.3.0 11883 38372 369788 153550 1 261 29233001 32935936 28586 16776704 0 198691789 99.574 226227491 33177 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 04:25:43] CVMFS is ok
[2025-12-02 04:25:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 04:25:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 04:25:43] Further information can be found at the LHC@home message board.
[2025-12-02 04:25:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 04:25:43] Checking for apptainer binary...
[2025-12-02 04:25:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 04:25:43] Running /usr/bin/apptainer --version
[2025-12-02 04:25:43] apptainer version 1.4.4-1.el9
[2025-12-02 04:25:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 04:26:04] c6-12-29-2.aglt2.org
[2025-12-02 04:26:04] apptainer works
[2025-12-02 04:26:04] Set ATHENA_PROC_NUMBER=8
[2025-12-02 04:26:04] Set ATHENA_CORE_NUMBER=8
[2025-12-02 04:26:04] Starting ATLAS job with PandaID=6898686367
[2025-12-02 04:26:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 02:11:57]  *** The last 200 lines of the pilot log: ***
[2025-12-03 02:11:57] 2025-12-03 07:10:41,508 | INFO     | monitor loop #4365: job 0:6898686367 is in state 'finished'
[2025-12-03 02:11:57] 2025-12-03 07:10:41,508 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:11:57] 2025-12-03 07:10:42,406 | INFO     | PID=1321392 has CPU usage=17.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-03 02:11:57] 2025-12-03 07:10:42,407 | INFO     | .. there are 43 such processes running
[2025-12-03 02:11:57] 2025-12-03 07:10:43,408 | INFO     | time since job start (78192s) is within the limit (172800.0s)
[2025-12-03 02:11:57] 2025-12-03 07:10:44,016 | INFO     | monitor loop #4366: job 0:6898686367 is in state 'finished'
[2025-12-03 02:11:57] 2025-12-03 07:10:44,016 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:11:57] 2025-12-03 07:10:45,416 | INFO     | time since job start (78194s) is within the limit (172800.0s)
[2025-12-03 02:11:57] 2025-12-03 07:10:46,521 | INFO     | monitor loop #4367: job 0:6898686367 is in state 'finished'
[2025-12-03 02:11:57] 2025-12-03 07:10:46,521 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:11:57] 2025-12-03 07:10:47,438 | INFO     | time since job start (78196s) is within the limit (172800.0s)
[2025-12-03 02:11:57] 2025-12-03 07:10:49,026 | INFO     | monitor loop #4368: job 0:6898686367 is in state 'finished'
[2025-12-03 02:11:57] 2025-12-03 07:10:49,026 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:11:57] 2025-12-03 07:10:49,446 | INFO     | time since job start (78198s) is within the limit (172800.0s)
[2025-12-03 02:11:57] 2025-12-03 07:10:51,453 | INFO     | time since job start (78200s) is within the limit (172800.0s)
[2025-12-03 02:11:57] 2025-12-03 07:10:51,522 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 02:11:57] 2025-12-03 07:10:51,534 | INFO     | monitor loop #4369: job 0:6898686367 is in state 'finished'
[2025-12-03 02:11:57] 2025-12-03 07:10:51,534 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:11:57] 2025-12-03 07:10:51,548 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2656.437718749998
[2025-12-03 02:11:57] 2025-12-03 07:10:51,582 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6898686367/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 02:11:57] 2025-12-03 07:10:51,583 | INFO     | extracted standard info from prmon json
[2025-12-03 02:11:57] 2025-12-03 07:10:51,583 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 02:11:57] 2025-12-03 07:10:51,583 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 02:11:57] 2025-12-03 07:10:51,633 | INFO     | fitting pss+swap vs Time
[2025-12-03 02:11:57] 2025-12-03 07:10:51,634 | INFO     | sum of square deviations: 648764077974.8401
[2025-12-03 02:11:57] 2025-12-03 07:10:51,704 | INFO     | sum of deviations: 4831564159077.078
[2025-12-03 02:11:57] 2025-12-03 07:10:51,704 | INFO     | mean x: 1764706792.600469
[2025-12-03 02:11:57] 2025-12-03 07:10:51,704 | INFO     | mean y: 2875627.88663018
[2025-12-03 02:11:57] 2025-12-03 07:10:51,704 | INFO     | intersect: -13139489031.118046
[2025-12-03 02:11:57] 2025-12-03 07:10:51,706 | INFO     | chi2: 18.21391932792016
[2025-12-03 02:11:57] 2025-12-03 07:10:51,711 | INFO     | sum of square deviations: 641186796682.3389
[2025-12-03 02:11:57] 2025-12-03 07:10:51,891 | INFO     | sum of deviations: 5259151093923.007
[2025-12-03 02:11:57] 2025-12-03 07:10:51,891 | INFO     | mean x: 1764706640.1177394
[2025-12-03 02:11:57] 2025-12-03 07:10:51,891 | INFO     | mean y: 2884233.3932496076
[2025-12-03 02:11:57] 2025-12-03 07:10:51,891 | INFO     | intersect: -14471616652.853773
[2025-12-03 02:11:57] 2025-12-03 07:10:51,893 | INFO     | chi2: 15.149635180814244
[2025-12-03 02:11:57] 2025-12-03 07:10:51,893 | INFO     | current chi2=15.149635180814244 (change=16.823859225118383 %)
[2025-12-03 02:11:57] 2025-12-03 07:10:51,893 | INFO     | right removable region: 1273
[2025-12-03 02:11:57] 2025-12-03 07:10:51,920 | INFO     | sum of square deviations: 641183363236.3386
[2025-12-03 02:11:57] 2025-12-03 07:10:52,008 | INFO     | sum of deviations: 4324312185866.847
[2025-12-03 02:11:57] 2025-12-03 07:10:52,008 | INFO     | mean x: 1764706945.1177394
[2025-12-03 02:11:57] 2025-12-03 07:10:52,008 | INFO     | mean y: 2885831.834379906
[2025-12-03 02:11:57] 2025-12-03 07:10:52,009 | INFO     | intersect: -11898770051.341862
[2025-12-03 02:11:57] 2025-12-03 07:10:52,012 | INFO     | chi2: 14.005614003815309
[2025-12-03 02:11:57] 2025-12-03 07:10:52,012 | INFO     | current chi2=14.005614003815309 (change=23.10488614964891 %)
[2025-12-03 02:11:57] 2025-12-03 07:10:52,012 | INFO     | left removable region: 10
[2025-12-03 02:11:57] 2025-12-03 07:10:52,013 | INFO     | sum of square deviations: 624718106032.5675
[2025-12-03 02:11:57] 2025-12-03 07:10:52,121 | INFO     | sum of deviations: 4399968083494.1455
[2025-12-03 02:11:57] 2025-12-03 07:10:52,121 | INFO     | mean x: 1764706914.6571655
[2025-12-03 02:11:57] 2025-12-03 07:10:52,121 | INFO     | mean y: 2905273.0673000794
[2025-12-03 02:11:57] 2025-12-03 07:10:52,121 | INFO     | intersect: -12426147168.720215
[2025-12-03 02:11:57] 2025-12-03 07:10:52,131 | INFO     | chi2: 7.235848839590348
[2025-12-03 02:11:57] 2025-12-03 07:10:52,131 | INFO     | current memory leak: 7.04 B/s (using 1263 data points, chi2=7.24)
[2025-12-03 02:11:57] 2025-12-03 07:10:52,137 | INFO     | could have reported an average CPU frequency of 2609 MHz (46 samples)
[2025-12-03 02:11:57] 2025-12-03 07:10:52,137 | INFO     | ..............................
[2025-12-03 02:11:57] 2025-12-03 07:10:52,137 | INFO     | . Timing measurements:
[2025-12-03 02:11:57] 2025-12-03 07:10:52,137 | INFO     | . get job = 0 s
[2025-12-03 02:11:57] 2025-12-03 07:10:52,137 | INFO     | . initial setup = 5 s
[2025-12-03 02:11:57] 2025-12-03 07:10:52,138 | INFO     | . payload setup = 54 s
[2025-12-03 02:11:57] 2025-12-03 07:10:52,138 | INFO     | . stage-in = 0 s
[2025-12-03 02:11:57] 2025-12-03 07:10:52,138 | INFO     | . payload execution = 78043 s
[2025-12-03 02:11:57] 2025-12-03 07:10:52,138 | INFO     | . stage-out = 5 s
[2025-12-03 02:11:57] 2025-12-03 07:10:52,138 | INFO     | . log creation = 1 s
[2025-12-03 02:11:57] 2025-12-03 07:10:52,138 | INFO     | ..............................
[2025-12-03 02:11:57] 2025-12-03 07:10:52,450 | INFO     | 
[2025-12-03 02:11:57] 2025-12-03 07:10:52,450 | INFO     | job summary report
[2025-12-03 02:11:57] 2025-12-03 07:10:52,450 | INFO     | --------------------------------------------------
[2025-12-03 02:11:57] 2025-12-03 07:10:52,450 | INFO     | PanDA job id: 6898686367
[2025-12-03 02:11:57] 2025-12-03 07:10:52,450 | INFO     | task id: 47556185
[2025-12-03 02:11:57] 2025-12-03 07:10:52,450 | INFO     | errors: (none)
[2025-12-03 02:11:57] 2025-12-03 07:10:52,450 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 02:11:57] 2025-12-03 07:10:52,450 | INFO     | pilot state: finished 
[2025-12-03 02:11:57] 2025-12-03 07:10:52,451 | INFO     | transexitcode: 0
[2025-12-03 02:11:57] 2025-12-03 07:10:52,451 | INFO     | exeerrorcode: 0
[2025-12-03 02:11:57] 2025-12-03 07:10:52,451 | INFO     | exeerrordiag: 
[2025-12-03 02:11:57] 2025-12-03 07:10:52,451 | INFO     | exitcode: 0
[2025-12-03 02:11:57] 2025-12-03 07:10:52,451 | INFO     | exitmsg: OK
[2025-12-03 02:11:57] 2025-12-03 07:10:52,451 | INFO     | cpuconsumptiontime: 270198 s
[2025-12-03 02:11:57] 2025-12-03 07:10:52,451 | INFO     | nevents: 1000
[2025-12-03 02:11:57] 2025-12-03 07:10:52,451 | INFO     | neventsw: 0
[2025-12-03 02:11:57] 2025-12-03 07:10:52,451 | INFO     | pid: 1338065
[2025-12-03 02:11:57] 2025-12-03 07:10:52,451 | INFO     | pgrp: 1338065
[2025-12-03 02:11:57] 2025-12-03 07:10:52,451 | INFO     | corecount: 8
[2025-12-03 02:11:57] 2025-12-03 07:10:52,451 | INFO     | event service: False
[2025-12-03 02:11:57] 2025-12-03 07:10:52,451 | INFO     | sizes: {0: 2284087, 1: 2284171, 2: 2284370, 13: 2284370, 25: 2284426, 35: 2284716, 36: 2284872, 78102: 2344419, 78108: 2353413, 78111: 2353469, 78130: 2353715}
[2025-12-03 02:11:57] 2025-12-03 07:10:52,451 | INFO     | --------------------------------------------------
[2025-12-03 02:11:57] 2025-12-03 07:10:52,452 | INFO     | 
[2025-12-03 02:11:57] 2025-12-03 07:10:52,452 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-03 02:11:57] 2025-12-03 07:10:52,477 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 02:11:57] 2025-12-03 07:10:52,477 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 02:11:57] 2025-12-03 07:10:52,477 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 02:11:57] 2025-12-03 07:10:52,477 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 02:11:57] 2025-12-03 07:10:52,478 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 02:11:57] 2025-12-03 07:10:52,478 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 02:11:57] 2025-12-03 07:10:52,478 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 02:11:57] 2025-12-03 07:10:52,478 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 02:11:57] 2025-12-03 07:10:52,478 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 02:11:57] 2025-12-03 07:10:52,478 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 02:11:57] 2025-12-03 07:10:52,478 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 02:11:57] 2025-12-03 07:10:52,478 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 02:11:57] 2025-12-03 07:10:52,478 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 02:11:57] 2025-12-03 07:10:52,478 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 02:11:57] 2025-12-03 07:10:52,478 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 02:11:57] 2025-12-03 07:10:52,478 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 02:11:57] 2025-12-03 07:10:52,478 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 02:11:57] 2025-12-03 07:10:52,479 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 02:11:57] 2025-12-03 07:10:52,479 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 02:11:57] 2025-12-03 07:10:52,479 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 02:11:57] 2025-12-03 07:10:52,479 | INFO     | job 6898686367 has completed (purged errors)
[2025-12-03 02:11:57] 2025-12-03 07:10:52,479 | INFO     | overall cleanup function is called
[2025-12-03 02:11:57] 2025-12-03 07:10:53,531 | INFO     | --- collectZombieJob: --- 10, [1338065]
[2025-12-03 02:11:57] 2025-12-03 07:10:53,531 | INFO     | zombie collector waiting for pid 1338065
[2025-12-03 02:11:57] 2025-12-03 07:10:53,531 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 02:11:57] 2025-12-03 07:10:53,531 | INFO     | collected zombie processes
[2025-12-03 02:11:57] 2025-12-03 07:10:53,531 | INFO     | will attempt to kill all subprocesses of pid=1338065
[2025-12-03 02:11:57] 2025-12-03 07:10:54,271 | INFO     | process IDs to be killed: [1338065] (in reverse order)
[2025-12-03 02:11:57] 2025-12-03 07:10:54,459 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 02:11:57] 2025-12-03 07:10:54,459 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 02:11:57] 2025-12-03 07:10:54,485 | INFO     | did not find any defunct processes belonging to 1338065
[2025-12-03 02:11:57] 2025-12-03 07:10:54,505 | INFO     | did not find any defunct processes belonging to 1338065
[2025-12-03 02:11:57] 2025-12-03 07:10:54,507 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 02:11:57] 2025-12-03 07:10:54,507 | INFO     | ready for new job
[2025-12-03 02:11:57] 2025-12-03 07:10:54,507 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 02:11:57] 2025-12-03 07:10:54,512 | INFO     | ***************************************
[2025-12-03 02:11:57] 2025-12-03 07:10:54,513 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 02:11:57] 2025-12-03 07:10:54,513 | INFO     | ***************************************
[2025-12-03 02:11:57] 2025-12-03 07:10:54,513 | INFO     | 
[2025-12-03 02:11:57] 2025-12-03 07:10:54,518 | INFO     | architecture information:
[2025-12-03 02:11:57] 2025-12-03 07:10:54,519 | INFO     | executing command: cat /etc/os-release
[2025-12-03 02:11:57] 2025-12-03 07:10:54,536 | INFO     | cat /etc/os-release:
[2025-12-03 02:11:57] NAME="CentOS Linux"
[2025-12-03 02:11:57] VERSION="7 (Core)"
[2025-12-03 02:11:57] ID="centos"
[2025-12-03 02:11:57] ID_LIKE="rhel fedora"
[2025-12-03 02:11:57] VERSION_ID="7"
[2025-12-03 02:11:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 02:11:57] ANSI_COLOR="0;31"
[2025-12-03 02:11:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 02:11:57] HOME_URL="https://www.centos.org/"
[2025-12-03 02:11:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 02:11:57] 
[2025-12-03 02:11:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 02:11:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 02:11:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 02:11:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 02:11:57] 
[2025-12-03 02:11:57] 2025-12-03 07:10:54,536 | INFO     | ***************************************
[2025-12-03 02:11:57] 2025-12-03 07:10:55,040 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-03 02:11:57] 2025-12-03 07:10:55,198 | INFO     | sufficient remaining disk space (88086675456 B)
[2025-12-03 02:11:57] 2025-12-03 07:10:55,198 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 02:11:57] 2025-12-03 07:10:55,200 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 02:11:57] 2025-12-03 07:10:55,200 | INFO     | update_server=False
[2025-12-03 02:11:57] 2025-12-03 07:10:55,200 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 02:11:57] 2025-12-03 07:10:55,221 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 02:11:57] 2025-12-03 07:10:55,221 | INFO     | aborting loop
[2025-12-03 02:11:57] 2025-12-03 07:10:55,344 | INFO     | all job control threads have been joined
[2025-12-03 02:11:57] 2025-12-03 07:10:55,567 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 02:11:57] 2025-12-03 07:10:56,203 | INFO     | all payload control threads have been joined
[2025-12-03 02:11:57] 2025-12-03 07:10:56,208 | INFO     | [job] retrieve thread has finished
[2025-12-03 02:11:57] 2025-12-03 07:10:56,227 | INFO     | [job] job monitor thread has finished
[2025-12-03 02:11:57] 2025-12-03 07:10:56,232 | INFO     | all data control threads have been joined
[2025-12-03 02:11:57] 2025-12-03 07:10:56,350 | INFO     | [job] control thread has finished
[2025-12-03 02:11:57] 2025-12-03 07:10:56,371 | INFO     | [payload] failed_post thread has finished
[2025-12-03 02:11:57] 2025-12-03 07:10:56,379 | INFO     | [payload] validate_post thread has finished
[2025-12-03 02:11:57] 2025-12-03 07:10:56,564 | INFO     | [data] copytool_in thread has finished
[2025-12-03 02:11:57] 2025-12-03 07:10:56,579 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 02:11:57] 2025-12-03 07:10:56,695 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 02:11:57] 2025-12-03 07:10:57,209 | INFO     | [payload] control thread has finished
[2025-12-03 02:11:57] 2025-12-03 07:10:57,219 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 02:11:57] 2025-12-03 07:10:57,238 | INFO     | [data] control thread has finished
[2025-12-03 02:11:57] 2025-12-03 07:10:57,333 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 02:11:57] 2025-12-03 07:10:57,453 | INFO     | [job] validate thread has finished
[2025-12-03 02:11:57] 2025-12-03 07:10:57,453 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 02:11:57] 2025-12-03 07:10:57,471 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 02:11:57] 2025-12-03 07:10:57,574 | INFO     | [data] copytool_out thread has finished
[2025-12-03 02:11:57] 2025-12-03 07:10:58,477 | INFO     | [job] queue monitor thread has finished
[2025-12-03 02:11:57] 2025-12-03 07:11:01,345 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 02:11:57] 2025-12-03 07:11:25,454 | INFO     | PID=1321392 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 02:11:57] 2025-12-03 07:11:25,454 | INFO     | .. there are 43 such processes running
[2025-12-03 02:11:57] 2025-12-03 07:11:25,455 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 02:11:57] 2025-12-03 07:11:25,455 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 02:11:57] 2025-12-03 07:11:25,455 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 02:11:57] 2025-12-03 07:11:50,870 | INFO     | [monitor] cgroup control has ended
[2025-12-03 02:11:57] 2025-12-03 07:11:51,666 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140414618163008)>', '<ExcThread(monitor, started 140414132668160)>']
[2025-12-03 02:11:57] 2025-12-03 07:11:52,654 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 02:11:57] 2025-12-03 07:11:52,654 | INFO     | [monitor] control thread has ended
[2025-12-03 02:11:57] 2025-12-03 07:11:56,692 | INFO     | all workflow threads have been joined
[2025-12-03 02:11:57] 2025-12-03 07:11:56,692 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 02:11:57] 2025-12-03 07:11:56,692 | INFO     | traces error code: 0
[2025-12-03 02:11:57] 2025-12-03 07:11:56,692 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 02:11:57] 2025-12-03 07:11:57,205 [wrapper] ==== pilot stdout END ====
[2025-12-03 02:11:57] 2025-12-03 07:11:57,224 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 02:11:57] 2025-12-03 07:11:57,232 [wrapper] pilotpid: 1321392
[2025-12-03 02:11:57] 2025-12-03 07:11:57,245 [wrapper] Pilot exit status: 0
[2025-12-03 02:11:57] 2025-12-03 07:11:57,269 [wrapper] pandaids: 6898686367
[2025-12-03 02:11:57] 2025-12-03 07:11:57,373 [wrapper] cleanup supervisor_pilot 2002143 1321393
[2025-12-03 02:11:57] 2025-12-03 07:11:57,376 [wrapper] Test setup, not cleaning
[2025-12-03 02:11:57] 2025-12-03 07:11:57,378 [wrapper] apfmon messages muted
[2025-12-03 02:11:57] 2025-12-03 07:11:57,381 [wrapper] ==== wrapper stdout END ====
[2025-12-03 02:11:57] 2025-12-03 07:11:57,384 [wrapper] ==== wrapper stderr END ====
[2025-12-03 02:11:57]  *** Error codes and diagnostics ***
[2025-12-03 02:11:57]     "exeErrorCode": 0,
[2025-12-03 02:11:57]     "exeErrorDiag": "",
[2025-12-03 02:11:57]     "pilotErrorCode": 0,
[2025-12-03 02:11:57]     "pilotErrorDiag": "",
[2025-12-03 02:11:57]  *** Listing of results directory ***
[2025-12-03 02:11:57] total 1325744
[2025-12-03 02:11:57] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 11:12 pilot3.tar.gz
[2025-12-03 02:11:57] -rwx------. 1 boincer umatlas     36292 Nov 26 11:36 runpilot2-wrapper.sh
[2025-12-03 02:11:57] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 11:37 queuedata.json
[2025-12-03 02:11:57] -rw-r--r--. 1 boincer umatlas       100 Dec  2 04:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 02:11:57] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 04:25 run_atlas
[2025-12-03 02:11:57] -rw-r--r--. 1 boincer umatlas       105 Dec  2 04:25 job.xml
[2025-12-03 02:11:57] -rw-r--r--. 2 boincer umatlas 408764006 Dec  2 04:25 EVNT.47483658._004296.pool.root.1
[2025-12-03 02:11:57] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 04:25 start_atlas.sh
[2025-12-03 02:11:57] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 04:25 shared
[2025-12-03 02:11:57] -rw-r--r--. 2 boincer umatlas    590107 Dec  2 04:25 input.tar.gz
[2025-12-03 02:11:57] -rw-r--r--. 1 boincer umatlas         0 Dec  2 04:25 boinc_lockfile
[2025-12-03 02:11:57] -rw-r--r--. 1 boincer umatlas      2786 Dec  2 04:26 pandaJob.out
[2025-12-03 02:11:57] -rw-------. 1 boincer umatlas        57 Dec  2 04:26 setup.sh.local
[2025-12-03 02:11:57] -rw-------. 1 boincer umatlas    986791 Dec  2 04:27 agis_schedconf.cvmfs.json
[2025-12-03 02:11:57] drwx------. 5 boincer umatlas      4096 Dec  2 04:27 pilot3
[2025-12-03 02:11:57] -rw-r--r--. 1 boincer umatlas       533 Dec  3 01:55 boinc_task_state.xml
[2025-12-03 02:11:57] -rw-r--r--. 1 boincer umatlas      6882 Dec  3 02:04 init_data.xml
[2025-12-03 02:11:57] -rw-------. 1 boincer umatlas 921290549 Dec  3 02:09 HITS.47556185._000595.pool.root.1
[2025-12-03 02:11:57] -rw-------. 1 boincer umatlas      1059 Dec  3 02:10 memory_monitor_summary.json
[2025-12-03 02:11:57] -rw-------. 1 boincer umatlas   1516240 Dec  3 02:10 agis_ddmendpoints.agis.ALL.json
[2025-12-03 02:11:57] -rw-------. 1 boincer umatlas   2340051 Dec  3 02:10 log.47556185._000595.job.log.tgz.1
[2025-12-03 02:11:57] -rw-------. 1 boincer umatlas        95 Dec  3 02:10 pilot_heartbeat.json
[2025-12-03 02:11:57] -rw-------. 1 boincer umatlas      8626 Dec  3 02:10 heartbeat.json
[2025-12-03 02:11:57] -rw-r--r--. 1 boincer umatlas        29 Dec  3 02:11 wrapper_checkpoint.txt
[2025-12-03 02:11:57] -rw-------. 1 boincer umatlas      4824 Dec  3 02:11 pilotlog.txt
[2025-12-03 02:11:57] -rw-------. 1 boincer umatlas   9460294 Dec  3 02:11 log.47556185._000595.job.log.1
[2025-12-03 02:11:57] -rw-------. 1 boincer umatlas       353 Dec  3 02:11 output.list
[2025-12-03 02:11:57] -rw-r--r--. 1 boincer umatlas       620 Dec  3 02:11 runtime_log
[2025-12-03 02:11:57] -rw-------. 1 boincer umatlas  11816960 Dec  3 02:11 result.tar.gz
[2025-12-03 02:11:57] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 02:11 boinc_mmap_file
[2025-12-03 02:11:57] -rw-------. 1 boincer umatlas       662 Dec  3 02:11 Y1dNDmXgXi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmN9JKDmctRXon.diag
[2025-12-03 02:11:57] -rw-r--r--. 1 boincer umatlas      9353 Dec  3 02:11 runtime_log.err
[2025-12-03 02:11:57] -rw-r--r--. 1 boincer umatlas     21895 Dec  3 02:11 stderr.txt
[2025-12-03 02:11:57] HITS file was successfully produced:
[2025-12-03 02:11:57] -rw-------. 1 boincer umatlas 921290549 Dec  3 02:09 shared/HITS.pool.root.1
[2025-12-03 02:11:57]  *** Contents of shared directory: ***
[2025-12-03 02:11:57] total 1311024
[2025-12-03 02:11:57] -rw-r--r--. 2 boincer umatlas 408764006 Dec  2 04:25 ATLAS.root_0
[2025-12-03 02:11:57] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 04:25 start_atlas.sh
[2025-12-03 02:11:57] -rw-r--r--. 2 boincer umatlas    590107 Dec  2 04:25 input.tar.gz
[2025-12-03 02:11:57] -rw-------. 1 boincer umatlas 921290549 Dec  3 02:09 HITS.pool.root.1
[2025-12-03 02:11:57] -rw-------. 1 boincer umatlas  11816960 Dec  3 02:11 result.tar.gz
02:11:59 (1309298): run_atlas exited; CPU time 273495.445511
02:11:59 (1309298): called boinc_finish(0)

</stderr_txt>
]]>

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