Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:47:21 (4178842): wrapper (7.7.26015): starting
02:47:21 (4178842): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 02:47:21] Arguments: --nthreads 8
[2025-12-02 02:47:21] Threads: 8
[2025-12-02 02:47:21] Checking for CVMFS
[2025-12-02 02:47:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 02:47:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 02:47:22] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 02:47:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 02:47:23] 2.13.3.0 14106 38360 239716 153548 3 598 33597623 40960001 47824 16776704 0 490247019 99.751 319213342 46134 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 02:47:23] CVMFS is ok
[2025-12-02 02:47:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 02:47:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 02:47:23] Further information can be found at the LHC@home message board.
[2025-12-02 02:47:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 02:47:23] Checking for apptainer binary...
[2025-12-02 02:47:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 02:47:23] Running /usr/bin/apptainer --version
[2025-12-02 02:47:23] apptainer version 1.4.4-1.el9
[2025-12-02 02:47:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 02:47:24] c8-7-5.aglt2.org
[2025-12-02 02:47:24] apptainer works
[2025-12-02 02:47:24] Set ATHENA_PROC_NUMBER=8
[2025-12-02 02:47:24] Set ATHENA_CORE_NUMBER=8
[2025-12-02 02:47:24] Starting ATLAS job with PandaID=6901110311
[2025-12-02 02:47:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 14:08:40]  *** The last 200 lines of the pilot log: ***
[2025-12-02 14:08:40] 2025-12-02 19:07:27,864 | INFO     | monitor loop #2224: job 0:6901110311 is in state 'finished'
[2025-12-02 14:08:40] 2025-12-02 19:07:27,864 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 14:08:40] 2025-12-02 19:07:30,384 | INFO     | monitor loop #2225: job 0:6901110311 is in state 'finished'
[2025-12-02 14:08:40] 2025-12-02 19:07:30,384 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 14:08:40] 2025-12-02 19:07:30,560 | INFO     | PID=4187537 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 14:08:40] 2025-12-02 19:07:30,560 | INFO     | .. there are 86 such processes running
[2025-12-02 14:08:40] 2025-12-02 19:07:31,561 | INFO     | time since job start (40713s) is within the limit (172800.0s)
[2025-12-02 14:08:40] 2025-12-02 19:07:32,890 | INFO     | monitor loop #2226: job 0:6901110311 is in state 'finished'
[2025-12-02 14:08:40] 2025-12-02 19:07:32,890 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 14:08:40] 2025-12-02 19:07:33,566 | INFO     | time since job start (40715s) is within the limit (172800.0s)
[2025-12-02 14:08:40] 2025-12-02 19:07:35,397 | INFO     | monitor loop #2227: job 0:6901110311 is in state 'finished'
[2025-12-02 14:08:40] 2025-12-02 19:07:35,397 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 14:08:40] 2025-12-02 19:07:35,574 | INFO     | time since job start (40717s) is within the limit (172800.0s)
[2025-12-02 14:08:40] 2025-12-02 19:07:37,589 | INFO     | time since job start (40719s) is within the limit (172800.0s)
[2025-12-02 14:08:40] 2025-12-02 19:07:37,925 | INFO     | monitor loop #2228: job 0:6901110311 is in state 'finished'
[2025-12-02 14:08:40] 2025-12-02 19:07:37,925 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 14:08:40] 2025-12-02 19:07:38,972 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 14:08:40] 2025-12-02 19:07:38,980 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.990671874999
[2025-12-02 14:08:40] 2025-12-02 19:07:39,004 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6901110311/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 14:08:40] 2025-12-02 19:07:39,005 | INFO     | extracted standard info from prmon json
[2025-12-02 14:08:40] 2025-12-02 19:07:39,005 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 14:08:40] 2025-12-02 19:07:39,005 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 14:08:40] 2025-12-02 19:07:39,010 | INFO     | fitting pss+swap vs Time
[2025-12-02 14:08:40] 2025-12-02 19:07:39,011 | INFO     | sum of square deviations: 90367327687.02559
[2025-12-02 14:08:40] 2025-12-02 19:07:39,016 | INFO     | sum of deviations: 873268788847.3077
[2025-12-02 14:08:40] 2025-12-02 19:07:39,016 | INFO     | mean x: 1764682174.897436
[2025-12-02 14:08:40] 2025-12-02 19:07:39,017 | INFO     | mean y: 3194445.0633484162
[2025-12-02 14:08:40] 2025-12-02 19:07:39,017 | INFO     | intersect: -17049892162.856455
[2025-12-02 14:08:40] 2025-12-02 19:07:39,017 | INFO     | chi2: 36.98628850432123
[2025-12-02 14:08:40] 2025-12-02 19:07:39,017 | INFO     | sum of square deviations: 88338547731.38751
[2025-12-02 14:08:40] 2025-12-02 19:07:39,023 | INFO     | sum of deviations: 1147238422273.1958
[2025-12-02 14:08:40] 2025-12-02 19:07:39,023 | INFO     | mean x: 1764682022.411854
[2025-12-02 14:08:40] 2025-12-02 19:07:39,023 | INFO     | mean y: 3215039.6671732524
[2025-12-02 14:08:40] 2025-12-02 19:07:39,023 | INFO     | intersect: -22914424781.19124
[2025-12-02 14:08:40] 2025-12-02 19:07:39,023 | INFO     | chi2: 32.864478247538464
[2025-12-02 14:08:40] 2025-12-02 19:07:39,023 | INFO     | current chi2=32.864478247538464 (change=11.144157533679543 %)
[2025-12-02 14:08:40] 2025-12-02 19:07:39,024 | INFO     | right removable region: 657
[2025-12-02 14:08:40] 2025-12-02 19:07:39,024 | INFO     | sum of square deviations: 88337780351.38751
[2025-12-02 14:08:40] 2025-12-02 19:07:39,029 | INFO     | sum of deviations: 554029183954.7133
[2025-12-02 14:08:40] 2025-12-02 19:07:39,029 | INFO     | mean x: 1764682327.411854
[2025-12-02 14:08:40] 2025-12-02 19:07:39,029 | INFO     | mean y: 3218433.9088145895
[2025-12-02 14:08:40] 2025-12-02 19:07:39,029 | INFO     | intersect: -11064362230.969608
[2025-12-02 14:08:40] 2025-12-02 19:07:39,030 | INFO     | chi2: 31.688550431129293
[2025-12-02 14:08:40] 2025-12-02 19:07:39,030 | INFO     | current chi2=31.688550431129293 (change=14.32351903212182 %)
[2025-12-02 14:08:40] 2025-12-02 19:07:39,030 | INFO     | left removable region: 10
[2025-12-02 14:08:40] 2025-12-02 19:07:39,030 | INFO     | sum of square deviations: 83981100011.99684
[2025-12-02 14:08:40] 2025-12-02 19:07:39,036 | INFO     | sum of deviations: 586433917111.2338
[2025-12-02 14:08:40] 2025-12-02 19:07:39,036 | INFO     | mean x: 1764682296.9443586
[2025-12-02 14:08:40] 2025-12-02 19:07:39,036 | INFO     | mean y: 3266435.200927357
[2025-12-02 14:08:40] 2025-12-02 19:07:39,036 | INFO     | intersect: -12319381776.195408
[2025-12-02 14:08:40] 2025-12-02 19:07:39,036 | INFO     | chi2: 22.296660653153047
[2025-12-02 14:08:40] 2025-12-02 19:07:39,036 | INFO     | current memory leak: 6.98 B/s (using 647 data points, chi2=22.30)
[2025-12-02 14:08:40] 2025-12-02 19:07:39,037 | INFO     | could have reported an average CPU frequency of 3796 MHz (26 samples)
[2025-12-02 14:08:40] 2025-12-02 19:07:39,037 | INFO     | ..............................
[2025-12-02 14:08:40] 2025-12-02 19:07:39,037 | INFO     | . Timing measurements:
[2025-12-02 14:08:40] 2025-12-02 19:07:39,037 | INFO     | . get job = 0 s
[2025-12-02 14:08:40] 2025-12-02 19:07:39,037 | INFO     | . initial setup = 7 s
[2025-12-02 14:08:40] 2025-12-02 19:07:39,037 | INFO     | . payload setup = 101 s
[2025-12-02 14:08:40] 2025-12-02 19:07:39,037 | INFO     | . stage-in = 0 s
[2025-12-02 14:08:40] 2025-12-02 19:07:39,037 | INFO     | . payload execution = 40431 s
[2025-12-02 14:08:40] 2025-12-02 19:07:39,037 | INFO     | . stage-out = 6 s
[2025-12-02 14:08:40] 2025-12-02 19:07:39,037 | INFO     | . log creation = 1 s
[2025-12-02 14:08:40] 2025-12-02 19:07:39,037 | INFO     | ..............................
[2025-12-02 14:08:40] 2025-12-02 19:07:39,162 | INFO     | 
[2025-12-02 14:08:40] 2025-12-02 19:07:39,162 | INFO     | job summary report
[2025-12-02 14:08:40] 2025-12-02 19:07:39,162 | INFO     | --------------------------------------------------
[2025-12-02 14:08:40] 2025-12-02 19:07:39,162 | INFO     | PanDA job id: 6901110311
[2025-12-02 14:08:40] 2025-12-02 19:07:39,162 | INFO     | task id: 47531058
[2025-12-02 14:08:40] 2025-12-02 19:07:39,162 | INFO     | errors: (none)
[2025-12-02 14:08:40] 2025-12-02 19:07:39,162 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 14:08:40] 2025-12-02 19:07:39,162 | INFO     | pilot state: finished 
[2025-12-02 14:08:40] 2025-12-02 19:07:39,162 | INFO     | transexitcode: 0
[2025-12-02 14:08:40] 2025-12-02 19:07:39,162 | INFO     | exeerrorcode: 0
[2025-12-02 14:08:40] 2025-12-02 19:07:39,162 | INFO     | exeerrordiag: 
[2025-12-02 14:08:40] 2025-12-02 19:07:39,162 | INFO     | exitcode: 0
[2025-12-02 14:08:40] 2025-12-02 19:07:39,162 | INFO     | exitmsg: OK
[2025-12-02 14:08:40] 2025-12-02 19:07:39,162 | INFO     | cpuconsumptiontime: 116818 s
[2025-12-02 14:08:40] 2025-12-02 19:07:39,162 | INFO     | nevents: 1000
[2025-12-02 14:08:40] 2025-12-02 19:07:39,162 | INFO     | neventsw: 0
[2025-12-02 14:08:40] 2025-12-02 19:07:39,162 | INFO     | pid: 39798
[2025-12-02 14:08:40] 2025-12-02 19:07:39,162 | INFO     | pgrp: 39798
[2025-12-02 14:08:40] 2025-12-02 19:07:39,162 | INFO     | corecount: 8
[2025-12-02 14:08:40] 2025-12-02 19:07:39,162 | INFO     | event service: False
[2025-12-02 14:08:40] 2025-12-02 19:07:39,162 | INFO     | sizes: {0: 2284226, 1: 2284310, 2: 2284481, 3: 2284509, 13: 2284537, 24: 2284593, 35: 2284749, 46: 2285067, 57: 2285067, 40537: 2347860, 40544: 2356854, 40548: 235
[2025-12-02 14:08:40] 2025-12-02 19:07:39,162 | INFO     | --------------------------------------------------
[2025-12-02 14:08:40] 2025-12-02 19:07:39,162 | INFO     | 
[2025-12-02 14:08:40] 2025-12-02 19:07:39,163 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-02 14:08:40] 2025-12-02 19:07:39,328 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 14:08:40] 2025-12-02 19:07:39,329 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 14:08:40] 2025-12-02 19:07:39,329 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 14:08:40] 2025-12-02 19:07:39,329 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 14:08:40] 2025-12-02 19:07:39,329 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 14:08:40] 2025-12-02 19:07:39,329 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 14:08:40] 2025-12-02 19:07:39,329 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 14:08:40] 2025-12-02 19:07:39,329 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 14:08:40] 2025-12-02 19:07:39,329 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 14:08:40] 2025-12-02 19:07:39,330 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 14:08:40] 2025-12-02 19:07:39,330 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 14:08:40] 2025-12-02 19:07:39,330 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 14:08:40] 2025-12-02 19:07:39,330 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 14:08:40] 2025-12-02 19:07:39,330 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 14:08:40] 2025-12-02 19:07:39,330 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 14:08:40] 2025-12-02 19:07:39,330 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 14:08:40] 2025-12-02 19:07:39,330 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 14:08:40] 2025-12-02 19:07:39,330 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 14:08:40] 2025-12-02 19:07:39,331 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 14:08:40] 2025-12-02 19:07:39,331 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 14:08:40] 2025-12-02 19:07:39,332 | INFO     | job 6901110311 has completed (purged errors)
[2025-12-02 14:08:40] 2025-12-02 19:07:39,332 | INFO     | overall cleanup function is called
[2025-12-02 14:08:40] 2025-12-02 19:07:40,379 | INFO     | --- collectZombieJob: --- 10, [39798]
[2025-12-02 14:08:40] 2025-12-02 19:07:40,379 | INFO     | zombie collector waiting for pid 39798
[2025-12-02 14:08:40] 2025-12-02 19:07:40,379 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 14:08:40] 2025-12-02 19:07:40,379 | INFO     | collected zombie processes
[2025-12-02 14:08:40] 2025-12-02 19:07:40,379 | INFO     | will attempt to kill all subprocesses of pid=39798
[2025-12-02 14:08:40] 2025-12-02 19:07:42,525 | INFO     | process IDs to be killed: [39798] (in reverse order)
[2025-12-02 14:08:40] 2025-12-02 19:07:42,997 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 14:08:40] 2025-12-02 19:07:42,997 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 14:08:40] 2025-12-02 19:07:43,081 | INFO     | did not find any defunct processes belonging to 39798
[2025-12-02 14:08:40] 2025-12-02 19:07:43,203 | INFO     | did not find any defunct processes belonging to 39798
[2025-12-02 14:08:40] 2025-12-02 19:07:43,218 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 14:08:40] 2025-12-02 19:07:43,218 | INFO     | ready for new job
[2025-12-02 14:08:40] 2025-12-02 19:07:43,218 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 14:08:40] 2025-12-02 19:07:43,224 | INFO     | ***************************************
[2025-12-02 14:08:40] 2025-12-02 19:07:43,224 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 14:08:40] 2025-12-02 19:07:43,224 | INFO     | ***************************************
[2025-12-02 14:08:40] 2025-12-02 19:07:43,224 | INFO     | 
[2025-12-02 14:08:40] 2025-12-02 19:07:43,235 | INFO     | architecture information:
[2025-12-02 14:08:40] 2025-12-02 19:07:43,243 | INFO     | executing command: cat /etc/os-release
[2025-12-02 14:08:40] 2025-12-02 19:07:43,298 | INFO     | cat /etc/os-release:
[2025-12-02 14:08:40] NAME="CentOS Linux"
[2025-12-02 14:08:40] VERSION="7 (Core)"
[2025-12-02 14:08:40] ID="centos"
[2025-12-02 14:08:40] ID_LIKE="rhel fedora"
[2025-12-02 14:08:40] VERSION_ID="7"
[2025-12-02 14:08:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 14:08:40] ANSI_COLOR="0;31"
[2025-12-02 14:08:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 14:08:40] HOME_URL="https://www.centos.org/"
[2025-12-02 14:08:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 14:08:40] 
[2025-12-02 14:08:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 14:08:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 14:08:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 14:08:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 14:08:40] 
[2025-12-02 14:08:40] 2025-12-02 19:07:43,298 | INFO     | ***************************************
[2025-12-02 14:08:40] 2025-12-02 19:07:43,802 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-02 14:08:40] 2025-12-02 19:07:43,912 | INFO     | sufficient remaining disk space (164451319808 B)
[2025-12-02 14:08:40] 2025-12-02 19:07:43,912 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 14:08:40] 2025-12-02 19:07:43,912 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 14:08:40] 2025-12-02 19:07:43,912 | INFO     | update_server=False
[2025-12-02 14:08:40] 2025-12-02 19:07:43,912 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 14:08:40] 2025-12-02 19:07:43,979 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 14:08:40] 2025-12-02 19:07:43,979 | INFO     | aborting loop
[2025-12-02 14:08:40] 2025-12-02 19:07:44,146 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 14:08:40] 2025-12-02 19:07:44,170 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 14:08:40] 2025-12-02 19:07:44,327 | INFO     | all payload control threads have been joined
[2025-12-02 14:08:40] 2025-12-02 19:07:44,588 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 14:08:40] 2025-12-02 19:07:44,848 | INFO     | all data control threads have been joined
[2025-12-02 14:08:40] 2025-12-02 19:07:44,918 | INFO     | [job] retrieve thread has finished
[2025-12-02 14:08:40] 2025-12-02 19:07:44,972 | INFO     | [job] validate thread has finished
[2025-12-02 14:08:40] 2025-12-02 19:07:44,985 | INFO     | [job] job monitor thread has finished
[2025-12-02 14:08:40] 2025-12-02 19:07:45,175 | INFO     | [job] queue monitor thread has finished
[2025-12-02 14:08:40] 2025-12-02 19:07:45,333 | INFO     | [payload] control thread has finished
[2025-12-02 14:08:40] 2025-12-02 19:07:45,402 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 14:08:40] 2025-12-02 19:07:45,407 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 14:08:40] 2025-12-02 19:07:45,520 | INFO     | [payload] failed_post thread has finished
[2025-12-02 14:08:40] 2025-12-02 19:07:45,546 | INFO     | all job control threads have been joined
[2025-12-02 14:08:40] 2025-12-02 19:07:45,598 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 14:08:40] 2025-12-02 19:07:45,677 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 14:08:40] 2025-12-02 19:07:45,690 | INFO     | [data] copytool_in thread has finished
[2025-12-02 14:08:40] 2025-12-02 19:07:45,853 | INFO     | [data] control thread has finished
[2025-12-02 14:08:40] 2025-12-02 19:07:46,144 | INFO     | [payload] validate_post thread has finished
[2025-12-02 14:08:40] 2025-12-02 19:07:46,153 | INFO     | [data] copytool_out thread has finished
[2025-12-02 14:08:40] 2025-12-02 19:07:46,554 | INFO     | [job] control thread has finished
[2025-12-02 14:08:40] 2025-12-02 19:07:48,597 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 14:08:40] 2025-12-02 19:08:09,635 | INFO     | 40728s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-02 14:08:40] 2025-12-02 19:08:10,684 | INFO     | [monitor] cgroup control has ended
[2025-12-02 14:08:40] 2025-12-02 19:08:12,088 | INFO     | PID=4187537 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 14:08:40] 2025-12-02 19:08:12,088 | INFO     | .. there are 86 such processes running
[2025-12-02 14:08:40] 2025-12-02 19:08:12,092 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 14:08:40] 2025-12-02 19:08:12,092 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 14:08:40] 2025-12-02 19:08:12,092 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 14:08:40] 2025-12-02 19:08:12,625 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140674339493696)>', '<ExcThread(monitor, started 140673843971840)>']
[2025-12-02 14:08:40] 2025-12-02 19:08:13,097 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 14:08:40] 2025-12-02 19:08:13,097 | INFO     | [monitor] control thread has ended
[2025-12-02 14:08:40] 2025-12-02 19:08:17,653 | INFO     | all workflow threads have been joined
[2025-12-02 14:08:40] 2025-12-02 19:08:17,653 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 14:08:40] 2025-12-02 19:08:17,653 | INFO     | traces error code: 0
[2025-12-02 14:08:40] 2025-12-02 19:08:17,653 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 14:08:40] 2025-12-02 19:08:17,954 [wrapper] ==== pilot stdout END ====
[2025-12-02 14:08:40] 2025-12-02 19:08:17,986 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 14:08:40] 2025-12-02 19:08:18,001 [wrapper] pilotpid: 4187537
[2025-12-02 14:08:40] 2025-12-02 19:08:18,052 [wrapper] Pilot exit status: 0
[2025-12-02 14:08:40] 2025-12-02 19:08:18,244 [wrapper] pandaids: 6901110311
[2025-12-02 14:08:40] 2025-12-02 19:08:18,671 [wrapper] cleanup supervisor_pilot  840881 4187538
[2025-12-02 14:08:40] 2025-12-02 19:08:18,728 [wrapper] Test setup, not cleaning
[2025-12-02 14:08:40] 2025-12-02 19:08:18,769 [wrapper] apfmon messages muted
[2025-12-02 14:08:40] 2025-12-02 19:08:18,883 [wrapper] ==== wrapper stdout END ====
[2025-12-02 14:08:40] 2025-12-02 19:08:18,929 [wrapper] ==== wrapper stderr END ====
[2025-12-02 14:08:40]  *** Error codes and diagnostics ***
[2025-12-02 14:08:40]     "exeErrorCode": 0,
[2025-12-02 14:08:40]     "exeErrorDiag": "",
[2025-12-02 14:08:40]     "pilotErrorCode": 0,
[2025-12-02 14:08:40]     "pilotErrorDiag": "",
[2025-12-02 14:08:40]  *** Listing of results directory ***
[2025-12-02 14:08:40] total 1068488
[2025-12-02 14:08:40] -rw-r--r--. 1 boincer umatlas    576529 Nov 29 04:19 pilot3.tar.gz
[2025-12-02 14:08:40] -rw-r--r--. 1 boincer umatlas      5112 Nov 29 04:19 queuedata.json
[2025-12-02 14:08:40] -rwx------. 1 boincer umatlas     36292 Nov 29 04:19 runpilot2-wrapper.sh
[2025-12-02 14:08:40] -rw-r--r--. 1 boincer umatlas       100 Dec  2 02:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 14:08:40] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 02:47 run_atlas
[2025-12-02 14:08:40] -rw-r--r--. 1 boincer umatlas       105 Dec  2 02:47 job.xml
[2025-12-02 14:08:40] -rw-r--r--. 2 boincer umatlas 377817583 Dec  2 02:47 EVNT.47531050._000551.pool.root.1
[2025-12-02 14:08:40] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 02:47 start_atlas.sh
[2025-12-02 14:08:40] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 02:47 shared
[2025-12-02 14:08:40] -rw-r--r--. 2 boincer umatlas    590121 Dec  2 02:47 input.tar.gz
[2025-12-02 14:08:40] -rw-r--r--. 1 boincer umatlas         0 Dec  2 02:47 boinc_lockfile
[2025-12-02 14:08:40] -rw-r--r--. 1 boincer umatlas      2880 Dec  2 02:47 pandaJob.out
[2025-12-02 14:08:40] -rw-------. 1 boincer umatlas        57 Dec  2 02:47 setup.sh.local
[2025-12-02 14:08:40] -rw-------. 1 boincer umatlas    990249 Dec  2 02:48 agis_schedconf.cvmfs.json
[2025-12-02 14:08:40] drwx------. 5 boincer umatlas      4096 Dec  2 02:48 pilot3
[2025-12-02 14:08:40] -rw-r--r--. 1 boincer umatlas       533 Dec  2 13:39 boinc_task_state.xml
[2025-12-02 14:08:40] -rw-r--r--. 1 boincer umatlas      7174 Dec  2 14:01 init_data.xml
[2025-12-02 14:08:40] -rw-------. 1 boincer umatlas 698718430 Dec  2 14:05 HITS.47531058._001664.pool.root.1
[2025-12-02 14:08:40] -rw-------. 1 boincer umatlas      1055 Dec  2 14:06 memory_monitor_summary.json
[2025-12-02 14:08:40] -rw-------. 1 boincer umatlas   1516240 Dec  2 14:06 agis_ddmendpoints.agis.ALL.json
[2025-12-02 14:08:40] -rw-------. 1 boincer umatlas   1958347 Dec  2 14:06 log.47531058._001664.job.log.tgz.1
[2025-12-02 14:08:40] -rw-------. 1 boincer umatlas     28446 Dec  2 14:07 heartbeat.json
[2025-12-02 14:08:40] -rw-------. 1 boincer umatlas        95 Dec  2 14:08 pilot_heartbeat.json
[2025-12-02 14:08:40] -rw-------. 1 boincer umatlas      4941 Dec  2 14:08 pilotlog.txt
[2025-12-02 14:08:40] -rw-------. 1 boincer umatlas   4858304 Dec  2 14:08 log.47531058._001664.job.log.1
[2025-12-02 14:08:40] -rw-------. 1 boincer umatlas       353 Dec  2 14:08 output.list
[2025-12-02 14:08:40] -rw-r--r--. 1 boincer umatlas       620 Dec  2 14:08 runtime_log
[2025-12-02 14:08:40] -rw-------. 1 boincer umatlas   6860800 Dec  2 14:08 result.tar.gz
[2025-12-02 14:08:40] -rw-r--r--. 1 boincer umatlas      9333 Dec  2 14:08 runtime_log.err
[2025-12-02 14:08:40] -rw-------. 1 boincer umatlas       658 Dec  2 14:08 OJlNDmxHWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3yOKDmslFSEm.diag
[2025-12-02 14:08:40] -rw-r--r--. 1 boincer umatlas        29 Dec  2 14:08 wrapper_checkpoint.txt
[2025-12-02 14:08:40] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 14:08 boinc_mmap_file
[2025-12-02 14:08:40] -rw-r--r--. 1 boincer umatlas     21897 Dec  2 14:08 stderr.txt
[2025-12-02 14:08:40] HITS file was successfully produced:
[2025-12-02 14:08:40] -rw-------. 1 boincer umatlas 698718430 Dec  2 14:05 shared/HITS.pool.root.1
[2025-12-02 14:08:40]  *** Contents of shared directory: ***
[2025-12-02 14:08:40] total 1058612
[2025-12-02 14:08:40] -rw-r--r--. 2 boincer umatlas 377817583 Dec  2 02:47 ATLAS.root_0
[2025-12-02 14:08:40] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 02:47 start_atlas.sh
[2025-12-02 14:08:40] -rw-r--r--. 2 boincer umatlas    590121 Dec  2 02:47 input.tar.gz
[2025-12-02 14:08:40] -rw-------. 1 boincer umatlas 698718430 Dec  2 14:05 HITS.pool.root.1
[2025-12-02 14:08:40] -rw-------. 1 boincer umatlas   6860800 Dec  2 14:08 result.tar.gz
14:08:41 (4178842): run_atlas exited; CPU time 117616.424697
14:08:41 (4178842): called boinc_finish(0)

</stderr_txt>
]]>

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