Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:24:30 (11832): wrapper (7.7.26015): starting
01:24:30 (11832): wrapper: running run_atlas (--nthreads 12)
[2025-12-02 01:24:30] Arguments: --nthreads 12
[2025-12-02 01:24:30] Threads: 12
[2025-12-02 01:24:30] Checking for CVMFS
[2025-12-02 01:24:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 01:24:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 01:24:30] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 01:24:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 01:24:30] 2.11.2.0 2981 295912 92680 153546 1 81 14131396 20275200 1 130560 1 134503903 99.964 17799851 14736 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 01:24:30] CVMFS is ok
[2025-12-02 01:24:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 01:24:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 01:24:30] Further information can be found at the LHC@home message board.
[2025-12-02 01:24:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 01:24:30] Checking for apptainer binary...
[2025-12-02 01:24:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 01:24:30] Running /usr/bin/apptainer --version
[2025-12-02 01:24:30] apptainer version 1.3.2-1.el7
[2025-12-02 01:24:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 01:24:31] c-205-30.aglt2.org
[2025-12-02 01:24:31] apptainer works
[2025-12-02 01:24:31] Set ATHENA_PROC_NUMBER=12
[2025-12-02 01:24:31] Set ATHENA_CORE_NUMBER=12
[2025-12-02 01:24:31] Starting ATLAS job with PandaID=6898214525
[2025-12-02 01:24:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 08:35:35]  *** The last 200 lines of the pilot log: ***
[2025-12-02 08:35:35] 2025-12-02 13:34:34,576 | INFO     | time since job start (25787s) is within the limit (172800.0s)
[2025-12-02 08:35:35] 2025-12-02 13:34:36,436 | INFO     | monitor loop #1935: job 0:6898214525 is in state 'finished'
[2025-12-02 08:35:35] 2025-12-02 13:34:36,439 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 08:35:35] 2025-12-02 13:34:36,577 | INFO     | time since job start (25789s) is within the limit (172800.0s)
[2025-12-02 08:35:35] 2025-12-02 13:34:37,679 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-02 08:35:35] 2025-12-02 13:34:37,683 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1751.1666666666667
[2025-12-02 08:35:35] 2025-12-02 13:34:37,685 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6898214525/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 08:35:35] 2025-12-02 13:34:37,687 | INFO     | extracted standard info from prmon json
[2025-12-02 08:35:35] 2025-12-02 13:34:37,687 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 08:35:35] 2025-12-02 13:34:37,687 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 08:35:35] 2025-12-02 13:34:37,694 | INFO     | fitting pss+swap vs Time
[2025-12-02 08:35:35] 2025-12-02 13:34:37,695 | INFO     | sum of square deviations: 23469208138.34521
[2025-12-02 08:35:35] 2025-12-02 13:34:37,699 | INFO     | sum of deviations: 323709549179.57477
[2025-12-02 08:35:35] 2025-12-02 13:34:37,699 | INFO     | mean x: 1764669587.1796691
[2025-12-02 08:35:35] 2025-12-02 13:34:37,699 | INFO     | mean y: 3432422.5319148935
[2025-12-02 08:35:35] 2025-12-02 13:34:37,699 | INFO     | intersect: -24336562056.596455
[2025-12-02 08:35:35] 2025-12-02 13:34:37,700 | INFO     | chi2: 5.810384021670769
[2025-12-02 08:35:35] 2025-12-02 13:34:37,700 | INFO     | sum of square deviations: 22646787990.681732
[2025-12-02 08:35:35] 2025-12-02 13:34:37,704 | INFO     | sum of deviations: 490479138619.6818
[2025-12-02 08:35:35] 2025-12-02 13:34:37,704 | INFO     | mean x: 1764669434.6818182
[2025-12-02 08:35:35] 2025-12-02 13:34:37,704 | INFO     | mean y: 3463312.4186602873
[2025-12-02 08:35:35] 2025-12-02 13:34:37,704 | INFO     | intersect: -38215358033.34358
[2025-12-02 08:35:35] 2025-12-02 13:34:37,705 | INFO     | chi2: 2.6346705632234646
[2025-12-02 08:35:35] 2025-12-02 13:34:37,705 | INFO     | current chi2=2.6346705632234646 (change=54.65582733607566 %)
[2025-12-02 08:35:35] 2025-12-02 13:34:37,706 | INFO     | sum of square deviations: 21843810068.014603
[2025-12-02 08:35:35] 2025-12-02 13:34:37,709 | INFO     | sum of deviations: 530409894528.17444
[2025-12-02 08:35:35] 2025-12-02 13:34:37,709 | INFO     | mean x: 1764669282.1840193
[2025-12-02 08:35:35] 2025-12-02 13:34:37,709 | INFO     | mean y: 3470843.2082324456
[2025-12-02 08:35:35] 2025-12-02 13:34:37,710 | INFO     | intersect: -42846107363.42962
[2025-12-02 08:35:35] 2025-12-02 13:34:37,710 | INFO     | chi2: 2.1981238317009097
[2025-12-02 08:35:35] 2025-12-02 13:34:37,710 | INFO     | current chi2=2.1981238317009097 (change=16.5693099401562 %)
[2025-12-02 08:35:35] 2025-12-02 13:34:37,710 | INFO     | right removable region: 412
[2025-12-02 08:35:35] 2025-12-02 13:34:37,711 | INFO     | sum of square deviations: 22646741630.68175
[2025-12-02 08:35:35] 2025-12-02 13:34:37,714 | INFO     | sum of deviations: 196789848679.81863
[2025-12-02 08:35:35] 2025-12-02 13:34:37,715 | INFO     | mean x: 1764669739.6818182
[2025-12-02 08:35:35] 2025-12-02 13:34:37,715 | INFO     | mean y: 3455870.5023923446
[2025-12-02 08:35:35] 2025-12-02 13:34:37,715 | INFO     | intersect: -15330718762.874474
[2025-12-02 08:35:35] 2025-12-02 13:34:37,715 | INFO     | chi2: 3.75183567979013
[2025-12-02 08:35:35] 2025-12-02 13:34:37,715 | INFO     | current chi2=3.75183567979013 (change=35.428782920422286 %)
[2025-12-02 08:35:35] 2025-12-02 13:34:37,716 | INFO     | sum of square deviations: 21843717348.01461
[2025-12-02 08:35:35] 2025-12-02 13:34:37,720 | INFO     | sum of deviations: 164631388931.00766
[2025-12-02 08:35:35] 2025-12-02 13:34:37,720 | INFO     | mean x: 1764669892.1840193
[2025-12-02 08:35:35] 2025-12-02 13:34:37,720 | INFO     | mean y: 3461971.092009685
[2025-12-02 08:35:35] 2025-12-02 13:34:37,720 | INFO     | intersect: -13296474606.845453
[2025-12-02 08:35:35] 2025-12-02 13:34:37,720 | INFO     | chi2: 3.6957965455304205
[2025-12-02 08:35:35] 2025-12-02 13:34:37,721 | INFO     | current chi2=3.6957965455304205 (change=1.4936457521733588 %)
[2025-12-02 08:35:35] 2025-12-02 13:34:37,721 | INFO     | left removable region: 20
[2025-12-02 08:35:35] 2025-12-02 13:34:37,721 | INFO     | sum of square deviations: 18678227022.030563
[2025-12-02 08:35:35] 2025-12-02 13:34:37,724 | INFO     | sum of deviations: 329637030411.8673
[2025-12-02 08:35:35] 2025-12-02 13:34:37,724 | INFO     | mean x: 1764669861.6887755
[2025-12-02 08:35:35] 2025-12-02 13:34:37,725 | INFO     | mean y: 3509642.5153061226
[2025-12-02 08:35:35] 2025-12-02 13:34:37,725 | INFO     | intersect: -31139731746.41874
[2025-12-02 08:35:35] 2025-12-02 13:34:37,725 | INFO     | chi2: 0.031257932839682576
[2025-12-02 08:35:35] 2025-12-02 13:34:37,725 | INFO     | current memory leak: 17.65 B/s (using 392 data points, chi2=0.03)
[2025-12-02 08:35:35] 2025-12-02 13:34:37,726 | INFO     | could have reported an average CPU frequency of 2399 MHz (18 samples)
[2025-12-02 08:35:35] 2025-12-02 13:34:37,726 | INFO     | ..............................
[2025-12-02 08:35:35] 2025-12-02 13:34:37,726 | INFO     | . Timing measurements:
[2025-12-02 08:35:35] 2025-12-02 13:34:37,726 | INFO     | . get job = 0 s
[2025-12-02 08:35:35] 2025-12-02 13:34:37,726 | INFO     | . initial setup = 2 s
[2025-12-02 08:35:35] 2025-12-02 13:34:37,726 | INFO     | . payload setup = 7 s
[2025-12-02 08:35:35] 2025-12-02 13:34:37,726 | INFO     | . stage-in = 0 s
[2025-12-02 08:35:35] 2025-12-02 13:34:37,727 | INFO     | . payload execution = 25752 s
[2025-12-02 08:35:35] 2025-12-02 13:34:37,727 | INFO     | . stage-out = 3 s
[2025-12-02 08:35:35] 2025-12-02 13:34:37,727 | INFO     | . log creation = 0 s
[2025-12-02 08:35:35] 2025-12-02 13:34:37,727 | INFO     | ..............................
[2025-12-02 08:35:35] 2025-12-02 13:34:37,807 | INFO     | 
[2025-12-02 08:35:35] 2025-12-02 13:34:37,807 | INFO     | job summary report
[2025-12-02 08:35:35] 2025-12-02 13:34:37,808 | INFO     | --------------------------------------------------
[2025-12-02 08:35:35] 2025-12-02 13:34:37,808 | INFO     | PanDA job id: 6898214525
[2025-12-02 08:35:35] 2025-12-02 13:34:37,808 | INFO     | task id: 47556161
[2025-12-02 08:35:35] 2025-12-02 13:34:37,808 | INFO     | errors: (none)
[2025-12-02 08:35:35] 2025-12-02 13:34:37,808 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 08:35:35] 2025-12-02 13:34:37,808 | INFO     | pilot state: finished 
[2025-12-02 08:35:35] 2025-12-02 13:34:37,809 | INFO     | transexitcode: 0
[2025-12-02 08:35:35] 2025-12-02 13:34:37,809 | INFO     | exeerrorcode: 0
[2025-12-02 08:35:35] 2025-12-02 13:34:37,809 | INFO     | exeerrordiag: 
[2025-12-02 08:35:35] 2025-12-02 13:34:37,809 | INFO     | exitcode: 0
[2025-12-02 08:35:35] 2025-12-02 13:34:37,809 | INFO     | exitmsg: OK
[2025-12-02 08:35:35] 2025-12-02 13:34:37,809 | INFO     | cpuconsumptiontime: 294334 s
[2025-12-02 08:35:35] 2025-12-02 13:34:37,809 | INFO     | nevents: 1000
[2025-12-02 08:35:35] 2025-12-02 13:34:37,809 | INFO     | neventsw: 0
[2025-12-02 08:35:35] 2025-12-02 13:34:37,809 | INFO     | pid: 22011
[2025-12-02 08:35:35] 2025-12-02 13:34:37,810 | INFO     | pgrp: 22011
[2025-12-02 08:35:35] 2025-12-02 13:34:37,810 | INFO     | corecount: 12
[2025-12-02 08:35:35] 2025-12-02 13:34:37,810 | INFO     | event service: False
[2025-12-02 08:35:35] 2025-12-02 13:34:37,810 | INFO     | sizes: {0: 2284093, 1: 2284292, 6: 2284554, 12: 2284582, 25763: 2321820, 25764: 2321819, 25767: 2330997, 25768: 2331053, 25775: 2331299}
[2025-12-02 08:35:35] 2025-12-02 13:34:37,810 | INFO     | --------------------------------------------------
[2025-12-02 08:35:35] 2025-12-02 13:34:37,810 | INFO     | 
[2025-12-02 08:35:35] 2025-12-02 13:34:37,810 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-02 08:35:35] 2025-12-02 13:34:37,832 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 08:35:35] 2025-12-02 13:34:37,833 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 08:35:35] 2025-12-02 13:34:37,833 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 08:35:35] 2025-12-02 13:34:37,833 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 08:35:35] 2025-12-02 13:34:37,833 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 08:35:35] 2025-12-02 13:34:37,833 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 08:35:35] 2025-12-02 13:34:37,834 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 08:35:35] 2025-12-02 13:34:37,834 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 08:35:35] 2025-12-02 13:34:37,834 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 08:35:35] 2025-12-02 13:34:37,834 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 08:35:35] 2025-12-02 13:34:37,834 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 08:35:35] 2025-12-02 13:34:37,834 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 08:35:35] 2025-12-02 13:34:37,835 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 08:35:35] 2025-12-02 13:34:37,835 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 08:35:35] 2025-12-02 13:34:37,835 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 08:35:35] 2025-12-02 13:34:37,835 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 08:35:35] 2025-12-02 13:34:37,835 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 08:35:35] 2025-12-02 13:34:37,835 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 08:35:35] 2025-12-02 13:34:37,835 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 08:35:35] 2025-12-02 13:34:37,836 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 08:35:35] 2025-12-02 13:34:37,836 | INFO     | job 6898214525 has completed (purged errors)
[2025-12-02 08:35:35] 2025-12-02 13:34:37,836 | INFO     | overall cleanup function is called
[2025-12-02 08:35:35] 2025-12-02 13:34:38,852 | INFO     | --- collectZombieJob: --- 10, [22011]
[2025-12-02 08:35:35] 2025-12-02 13:34:38,852 | INFO     | zombie collector waiting for pid 22011
[2025-12-02 08:35:35] 2025-12-02 13:34:38,852 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 08:35:35] 2025-12-02 13:34:38,853 | INFO     | collected zombie processes
[2025-12-02 08:35:35] 2025-12-02 13:34:38,853 | INFO     | will attempt to kill all subprocesses of pid=22011
[2025-12-02 08:35:35] 2025-12-02 13:34:38,943 | INFO     | process IDs to be killed: [22011] (in reverse order)
[2025-12-02 08:35:35] 2025-12-02 13:34:38,993 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 08:35:35] 2025-12-02 13:34:38,993 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 08:35:35] 2025-12-02 13:34:38,997 | INFO     | did not find any defunct processes belonging to 22011
[2025-12-02 08:35:35] 2025-12-02 13:34:39,000 | INFO     | did not find any defunct processes belonging to 22011
[2025-12-02 08:35:35] 2025-12-02 13:34:39,002 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 08:35:35] 2025-12-02 13:34:39,002 | INFO     | ready for new job
[2025-12-02 08:35:35] 2025-12-02 13:34:39,002 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 08:35:35] 2025-12-02 13:34:39,004 | INFO     | ***************************************
[2025-12-02 08:35:35] 2025-12-02 13:34:39,004 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 08:35:35] 2025-12-02 13:34:39,005 | INFO     | ***************************************
[2025-12-02 08:35:35] 2025-12-02 13:34:39,005 | INFO     | 
[2025-12-02 08:35:35] 2025-12-02 13:34:39,005 | INFO     | architecture information:
[2025-12-02 08:35:35] 2025-12-02 13:34:39,006 | INFO     | executing command: cat /etc/os-release
[2025-12-02 08:35:35] 2025-12-02 13:34:39,021 | INFO     | cat /etc/os-release:
[2025-12-02 08:35:35] NAME="CentOS Linux"
[2025-12-02 08:35:35] VERSION="7 (Core)"
[2025-12-02 08:35:35] ID="centos"
[2025-12-02 08:35:35] ID_LIKE="rhel fedora"
[2025-12-02 08:35:35] VERSION_ID="7"
[2025-12-02 08:35:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 08:35:35] ANSI_COLOR="0;31"
[2025-12-02 08:35:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 08:35:35] HOME_URL="https://www.centos.org/"
[2025-12-02 08:35:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 08:35:35] 
[2025-12-02 08:35:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 08:35:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 08:35:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 08:35:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 08:35:35] 
[2025-12-02 08:35:35] 2025-12-02 13:34:39,021 | INFO     | ***************************************
[2025-12-02 08:35:35] 2025-12-02 13:34:39,525 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-02 08:35:35] 2025-12-02 13:34:39,540 | INFO     | sufficient remaining disk space (28259123200 B)
[2025-12-02 08:35:35] 2025-12-02 13:34:39,540 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 08:35:35] 2025-12-02 13:34:39,540 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 08:35:35] 2025-12-02 13:34:39,541 | INFO     | update_server=False
[2025-12-02 08:35:35] 2025-12-02 13:34:39,541 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 08:35:35] 2025-12-02 13:34:39,541 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 08:35:35] 2025-12-02 13:34:39,679 | INFO     | all payload control threads have been joined
[2025-12-02 08:35:35] 2025-12-02 13:34:39,947 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 08:35:35] 2025-12-02 13:34:39,947 | INFO     | aborting loop
[2025-12-02 08:35:35] 2025-12-02 13:34:40,184 | INFO     | all data control threads have been joined
[2025-12-02 08:35:35] 2025-12-02 13:34:40,543 | INFO     | [job] retrieve thread has finished
[2025-12-02 08:35:35] 2025-12-02 13:34:40,547 | INFO     | [job] queue monitor thread has finished
[2025-12-02 08:35:35] 2025-12-02 13:34:40,665 | INFO     | [payload] validate_post thread has finished
[2025-12-02 08:35:35] 2025-12-02 13:34:40,682 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 08:35:35] 2025-12-02 13:34:40,685 | INFO     | [payload] control thread has finished
[2025-12-02 08:35:35] 2025-12-02 13:34:40,735 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 08:35:35] 2025-12-02 13:34:40,880 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 08:35:35] 2025-12-02 13:34:40,921 | INFO     | all job control threads have been joined
[2025-12-02 08:35:35] 2025-12-02 13:34:40,952 | INFO     | [job] job monitor thread has finished
[2025-12-02 08:35:35] 2025-12-02 13:34:40,953 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 08:35:35] 2025-12-02 13:34:40,992 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 08:35:35] 2025-12-02 13:34:41,189 | INFO     | [data] control thread has finished
[2025-12-02 08:35:35] 2025-12-02 13:34:41,469 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 08:35:35] 2025-12-02 13:34:41,690 | INFO     | [payload] failed_post thread has finished
[2025-12-02 08:35:35] 2025-12-02 13:34:41,890 | INFO     | [job] validate thread has finished
[2025-12-02 08:35:35] 2025-12-02 13:34:41,926 | INFO     | [job] control thread has finished
[2025-12-02 08:35:35] 2025-12-02 13:34:41,965 | INFO     | [data] copytool_in thread has finished
[2025-12-02 08:35:35] 2025-12-02 13:34:42,883 | INFO     | [data] copytool_out thread has finished
[2025-12-02 08:35:35] 2025-12-02 13:34:44,959 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 08:35:35] 2025-12-02 13:35:09,777 | INFO     | PID=15514 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 08:35:35] 2025-12-02 13:35:09,778 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 08:35:35] 2025-12-02 13:35:09,778 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 08:35:35] 2025-12-02 13:35:09,778 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 08:35:35] 2025-12-02 13:35:28,999 | INFO     | [monitor] cgroup control has ended
[2025-12-02 08:35:35] 2025-12-02 13:35:30,463 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139931640686400)>', '<ExcThread(monitor, started 139930764306176)>']
[2025-12-02 08:35:35] 2025-12-02 13:35:30,863 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 08:35:35] 2025-12-02 13:35:30,863 | INFO     | [monitor] control thread has ended
[2025-12-02 08:35:35] 2025-12-02 13:35:35,489 | INFO     | all workflow threads have been joined
[2025-12-02 08:35:35] 2025-12-02 13:35:35,489 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 08:35:35] 2025-12-02 13:35:35,489 | INFO     | traces error code: 0
[2025-12-02 08:35:35] 2025-12-02 13:35:35,490 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 08:35:35] 2025-12-02 13:35:35,595 [wrapper] ==== pilot stdout END ====
[2025-12-02 08:35:35] 2025-12-02 13:35:35,599 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 08:35:35] 2025-12-02 13:35:35,603 [wrapper] pilotpid: 15514
[2025-12-02 08:35:35] 2025-12-02 13:35:35,606 [wrapper] Pilot exit status: 0
[2025-12-02 08:35:35] 2025-12-02 13:35:35,619 [wrapper] pandaids: 6898214525
[2025-12-02 08:35:35] 2025-12-02 13:35:35,662 [wrapper] cleanup supervisor_pilot 28265 15515
[2025-12-02 08:35:35] 2025-12-02 13:35:35,666 [wrapper] Test setup, not cleaning
[2025-12-02 08:35:35] 2025-12-02 13:35:35,670 [wrapper] apfmon messages muted
[2025-12-02 08:35:35] 2025-12-02 13:35:35,674 [wrapper] ==== wrapper stdout END ====
[2025-12-02 08:35:35] 2025-12-02 13:35:35,678 [wrapper] ==== wrapper stderr END ====
[2025-12-02 08:35:35]  *** Error codes and diagnostics ***
[2025-12-02 08:35:35]     "exeErrorCode": 0,
[2025-12-02 08:35:35]     "exeErrorDiag": "",
[2025-12-02 08:35:35]     "pilotErrorCode": 0,
[2025-12-02 08:35:35]     "pilotErrorDiag": "",
[2025-12-02 08:35:35]  *** Listing of results directory ***
[2025-12-02 08:35:35] total 1300488
[2025-12-02 08:35:35] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 23:39 pilot3.tar.gz
[2025-12-02 08:35:35] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 23:42 queuedata.json
[2025-12-02 08:35:35] -rwx------ 1 boincer umatlas     36292 Nov 25 23:43 runpilot2-wrapper.sh
[2025-12-02 08:35:35] -rw-r--r-- 1 boincer umatlas       100 Dec  2 01:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 08:35:35] -rwxr-xr-x 1 boincer umatlas      7986 Dec  2 01:24 run_atlas
[2025-12-02 08:35:35] -rw-r--r-- 1 boincer umatlas       105 Dec  2 01:24 job.xml
[2025-12-02 08:35:35] -rw-r--r-- 2 boincer umatlas 409980028 Dec  2 01:24 EVNT.47483658._002504.pool.root.1
[2025-12-02 08:35:35] -rw-r--r-- 2 boincer umatlas     15847 Dec  2 01:24 start_atlas.sh
[2025-12-02 08:35:35] drwxrwx--x 2 boincer umatlas      4096 Dec  2 01:24 shared
[2025-12-02 08:35:35] -rw-r--r-- 2 boincer umatlas    590106 Dec  2 01:24 input.tar.gz
[2025-12-02 08:35:35] -rw-r--r-- 1 boincer umatlas         0 Dec  2 01:24 boinc_lockfile
[2025-12-02 08:35:35] -rw-r--r-- 1 boincer umatlas      2785 Dec  2 01:24 pandaJob.out
[2025-12-02 08:35:35] -rw------- 1 boincer umatlas        57 Dec  2 01:24 setup.sh.local
[2025-12-02 08:35:35] -rw------- 1 boincer umatlas    990257 Dec  2 01:24 agis_schedconf.cvmfs.json
[2025-12-02 08:35:35] drwx------ 5 boincer umatlas      4096 Dec  2 01:24 pilot3
[2025-12-02 08:35:35] -rw-r--r-- 1 boincer umatlas       533 Dec  2 08:25 boinc_task_state.xml
[2025-12-02 08:35:35] -rw-r--r-- 1 boincer umatlas      5955 Dec  2 08:28 init_data.xml
[2025-12-02 08:35:35] -rw------- 1 boincer umatlas 906234142 Dec  2 08:33 HITS.47556161._004864.pool.root.1
[2025-12-02 08:35:35] -rw------- 1 boincer umatlas      1065 Dec  2 08:34 memory_monitor_summary.json
[2025-12-02 08:35:35] -rw------- 1 boincer umatlas   1516240 Dec  2 08:34 agis_ddmendpoints.agis.ALL.json
[2025-12-02 08:35:35] -rw------- 1 boincer umatlas   2172060 Dec  2 08:34 log.47556161._004864.job.log.tgz.1
[2025-12-02 08:35:35] -rw------- 1 boincer umatlas      8662 Dec  2 08:34 heartbeat.json
[2025-12-02 08:35:35] -rw------- 1 boincer umatlas        95 Dec  2 08:35 pilot_heartbeat.json
[2025-12-02 08:35:35] -rw-r--r-- 1 boincer umatlas      8192 Dec  2 08:35 boinc_mmap_file
[2025-12-02 08:35:35] -rw-r--r-- 1 boincer umatlas        29 Dec  2 08:35 wrapper_checkpoint.txt
[2025-12-02 08:35:35] -rw------- 1 boincer umatlas      4746 Dec  2 08:35 pilotlog.txt
[2025-12-02 08:35:35] -rw------- 1 boincer umatlas   3611031 Dec  2 08:35 log.47556161._004864.job.log.1
[2025-12-02 08:35:35] -rw------- 1 boincer umatlas       353 Dec  2 08:35 output.list
[2025-12-02 08:35:35] -rw-r--r-- 1 boincer umatlas       620 Dec  2 08:35 runtime_log
[2025-12-02 08:35:35] -rw------- 1 boincer umatlas   5806080 Dec  2 08:35 result.tar.gz
[2025-12-02 08:35:35] -rw-r--r-- 1 boincer umatlas      9345 Dec  2 08:35 runtime_log.err
[2025-12-02 08:35:35] -rw------- 1 boincer umatlas       670 Dec  2 08:35 oSyKDmtYMi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDzMKDmf9FHgm.diag
[2025-12-02 08:35:35] -rw-r--r-- 1 boincer umatlas     21358 Dec  2 08:35 stderr.txt
[2025-12-02 08:35:35] HITS file was successfully produced:
[2025-12-02 08:35:35] -rw------- 1 boincer umatlas 906234142 Dec  2 08:33 shared/HITS.pool.root.1
[2025-12-02 08:35:35]  *** Contents of shared directory: ***
[2025-12-02 08:35:35] total 1291640
[2025-12-02 08:35:35] -rw-r--r-- 2 boincer umatlas 409980028 Dec  2 01:24 ATLAS.root_0
[2025-12-02 08:35:35] -rw-r--r-- 2 boincer umatlas     15847 Dec  2 01:24 start_atlas.sh
[2025-12-02 08:35:35] -rw-r--r-- 2 boincer umatlas    590106 Dec  2 01:24 input.tar.gz
[2025-12-02 08:35:35] -rw------- 1 boincer umatlas 906234142 Dec  2 08:33 HITS.pool.root.1
[2025-12-02 08:35:35] -rw------- 1 boincer umatlas   5806080 Dec  2 08:35 result.tar.gz
08:35:37 (11832): run_atlas exited; CPU time 286982.420945
08:35:37 (11832): called boinc_finish(0)

</stderr_txt>
]]>

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