Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:47:51 (15442): wrapper (7.7.26015): starting
00:47:51 (15442): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 00:47:51] Arguments: --nthreads 8
[2025-12-02 00:47:51] Threads: 8
[2025-12-02 00:47:51] Checking for CVMFS
[2025-12-02 00:47:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 00:47:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 00:47:51] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 00:47:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 00:47:51] 2.11.2.0 7040 125922 140832 153545 2 65 9506430 18432001 1831 130560 0 92419353 99.976 5174402 31467 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 00:47:51] CVMFS is ok
[2025-12-02 00:47:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 00:47:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 00:47:51] Further information can be found at the LHC@home message board.
[2025-12-02 00:47:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 00:47:51] Checking for apptainer binary...
[2025-12-02 00:47:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 00:47:51] Running /usr/bin/apptainer --version
[2025-12-02 00:47:51] apptainer version 1.3.2-1.el7
[2025-12-02 00:47:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 00:47:52] c-206-7.aglt2.org
[2025-12-02 00:47:52] apptainer works
[2025-12-02 00:47:52] Set ATHENA_PROC_NUMBER=8
[2025-12-02 00:47:52] Set ATHENA_CORE_NUMBER=8
[2025-12-02 00:47:52] Starting ATLAS job with PandaID=6897863856
[2025-12-02 00:47:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:27:31 (10874): wrapper (7.7.26015): starting
14:27:31 (10874): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 14:27:31] Arguments: --nthreads 8
[2025-12-02 14:27:31] Threads: 8
[2025-12-02 14:27:31] This job has been restarted, cleaning up previous attempt
[2025-12-02 14:27:32] Checking for CVMFS
[2025-12-02 14:27:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 14:27:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 14:27:32] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 14:27:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 14:27:32] 2.11.2.0 7040 126742 140216 153567 3 69 9712219 18432001 1 130560 0 93029672 99.976 5203246 31481 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 14:27:32] CVMFS is ok
[2025-12-02 14:27:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 14:27:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 14:27:32] Further information can be found at the LHC@home message board.
[2025-12-02 14:27:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 14:27:32] Checking for apptainer binary...
[2025-12-02 14:27:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 14:27:32] Running /usr/bin/apptainer --version
[2025-12-02 14:27:32] apptainer version 1.3.2-1.el7
[2025-12-02 14:27:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 14:27:33] c-206-7.aglt2.org
[2025-12-02 14:27:33] apptainer works
[2025-12-02 14:27:33] Set ATHENA_PROC_NUMBER=8
[2025-12-02 14:27:33] Set ATHENA_CORE_NUMBER=8
[2025-12-02 14:27:33] Starting ATLAS job with PandaID=6897863856
[2025-12-02 14:27:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 09:18:42]  *** The last 200 lines of the pilot log: ***
[2025-12-03 09:18:42] 2025-12-03 14:18:02,930 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 09:18:42] 2025-12-03 14:18:03,022 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-03 09:18:42] 2025-12-03 14:18:03,026 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2056.3333333333335
[2025-12-03 09:18:42] 2025-12-03 14:18:03,029 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6897863856/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 09:18:42] 2025-12-03 14:18:03,030 | INFO     | extracted standard info from prmon json
[2025-12-03 09:18:42] 2025-12-03 14:18:03,030 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 09:18:42] 2025-12-03 14:18:03,030 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 09:18:42] 2025-12-03 14:18:03,050 | INFO     | fitting pss+swap vs Time
[2025-12-03 09:18:42] 2025-12-03 14:18:03,051 | INFO     | sum of square deviations: 426369442303.3778
[2025-12-03 09:18:42] 2025-12-03 14:18:03,084 | INFO     | sum of deviations: 1970460011614.5737
[2025-12-03 09:18:42] 2025-12-03 14:18:03,084 | INFO     | mean x: 1764737580.048561
[2025-12-03 09:18:42] 2025-12-03 14:18:03,084 | INFO     | mean y: 2866119.267086331
[2025-12-03 09:18:42] 2025-12-03 14:18:03,084 | INFO     | intersect: -8152842258.175455
[2025-12-03 09:18:42] 2025-12-03 14:18:03,086 | INFO     | chi2: 5.890747735481073
[2025-12-03 09:18:42] 2025-12-03 14:18:03,088 | INFO     | sum of square deviations: 420643976811.8669
[2025-12-03 09:18:42] 2025-12-03 14:18:03,128 | INFO     | sum of deviations: 2331272466926.2974
[2025-12-03 09:18:42] 2025-12-03 14:18:03,128 | INFO     | mean x: 1764737427.5510387
[2025-12-03 09:18:42] 2025-12-03 14:18:03,128 | INFO     | mean y: 2875725.4372177054
[2025-12-03 09:18:42] 2025-12-03 14:18:03,128 | INFO     | intersect: -9777565700.077602
[2025-12-03 09:18:42] 2025-12-03 14:18:03,129 | INFO     | chi2: 2.824570666639813
[2025-12-03 09:18:42] 2025-12-03 14:18:03,130 | INFO     | current chi2=2.824570666639813 (change=52.05072779425103 %)
[2025-12-03 09:18:42] 2025-12-03 14:18:03,131 | INFO     | sum of square deviations: 414970000657.84155
[2025-12-03 09:18:42] 2025-12-03 14:18:03,154 | INFO     | sum of deviations: 2418480842901.354
[2025-12-03 09:18:42] 2025-12-03 14:18:03,154 | INFO     | mean x: 1764737275.053539
[2025-12-03 09:18:42] 2025-12-03 14:18:03,154 | INFO     | mean y: 2878067.8584392015
[2025-12-03 09:18:42] 2025-12-03 14:18:03,154 | INFO     | intersect: -10282162503.03824
[2025-12-03 09:18:42] 2025-12-03 14:18:03,155 | INFO     | chi2: 2.5510093287591125
[2025-12-03 09:18:42] 2025-12-03 14:18:03,155 | INFO     | current chi2=2.5510093287591125 (change=9.685059082134305 %)
[2025-12-03 09:18:42] 2025-12-03 14:18:03,155 | INFO     | right removable region: 1101
[2025-12-03 09:18:42] 2025-12-03 14:18:03,156 | INFO     | sum of square deviations: 420643604711.8669
[2025-12-03 09:18:42] 2025-12-03 14:18:03,180 | INFO     | sum of deviations: 1662700760094.1592
[2025-12-03 09:18:42] 2025-12-03 14:18:03,180 | INFO     | mean x: 1764737732.5510387
[2025-12-03 09:18:42] 2025-12-03 14:18:03,180 | INFO     | mean y: 2874307.165311653
[2025-12-03 09:18:42] 2025-12-03 14:18:03,180 | INFO     | intersect: -6972700113.582982
[2025-12-03 09:18:42] 2025-12-03 14:18:03,181 | INFO     | chi2: 3.5931217436427008
[2025-12-03 09:18:42] 2025-12-03 14:18:03,181 | INFO     | current chi2=3.5931217436427008 (change=39.003978696954576 %)
[2025-12-03 09:18:42] 2025-12-03 14:18:03,182 | INFO     | sum of square deviations: 414969256457.84155
[2025-12-03 09:18:42] 2025-12-03 14:18:03,205 | INFO     | sum of deviations: 1592568234740.3416
[2025-12-03 09:18:42] 2025-12-03 14:18:03,205 | INFO     | mean x: 1764737885.053539
[2025-12-03 09:18:42] 2025-12-03 14:18:03,206 | INFO     | mean y: 2876191.604355717
[2025-12-03 09:18:42] 2025-12-03 14:18:03,206 | INFO     | intersect: -6769831556.36021
[2025-12-03 09:18:42] 2025-12-03 14:18:03,207 | INFO     | chi2: 3.544880606008479
[2025-12-03 09:18:42] 2025-12-03 14:18:03,207 | INFO     | current chi2=3.544880606008479 (change=1.3425968023369836 %)
[2025-12-03 09:18:42] 2025-12-03 14:18:03,207 | INFO     | left removable region: 20
[2025-12-03 09:18:42] 2025-12-03 14:18:03,208 | INFO     | sum of square deviations: 391695293668.6361
[2025-12-03 09:18:42] 2025-12-03 14:18:03,230 | INFO     | sum of deviations: 1963607096411.911
[2025-12-03 09:18:42] 2025-12-03 14:18:03,230 | INFO     | mean x: 1764737854.5578167
[2025-12-03 09:18:42] 2025-12-03 14:18:03,231 | INFO     | mean y: 2891244.9454209064
[2025-12-03 09:18:42] 2025-12-03 14:18:03,231 | INFO     | intersect: -8843913479.361456
[2025-12-03 09:18:42] 2025-12-03 14:18:03,232 | INFO     | chi2: 0.1321290859641433
[2025-12-03 09:18:42] 2025-12-03 14:18:03,232 | INFO     | current memory leak: 5.01 B/s (using 1081 data points, chi2=0.13)
[2025-12-03 09:18:42] 2025-12-03 14:18:03,233 | INFO     | could have reported an average CPU frequency of 2516 MHz (40 samples)
[2025-12-03 09:18:42] 2025-12-03 14:18:03,233 | INFO     | ..............................
[2025-12-03 09:18:42] 2025-12-03 14:18:03,233 | INFO     | . Timing measurements:
[2025-12-03 09:18:42] 2025-12-03 14:18:03,233 | INFO     | . get job = 0 s
[2025-12-03 09:18:42] 2025-12-03 14:18:03,233 | INFO     | . initial setup = 2 s
[2025-12-03 09:18:42] 2025-12-03 14:18:03,233 | INFO     | . payload setup = 7 s
[2025-12-03 09:18:42] 2025-12-03 14:18:03,233 | INFO     | . stage-in = 0 s
[2025-12-03 09:18:42] 2025-12-03 14:18:03,234 | INFO     | . payload execution = 67780 s
[2025-12-03 09:18:42] 2025-12-03 14:18:03,234 | INFO     | . stage-out = 3 s
[2025-12-03 09:18:42] 2025-12-03 14:18:03,234 | INFO     | . log creation = 0 s
[2025-12-03 09:18:42] 2025-12-03 14:18:03,234 | INFO     | ..............................
[2025-12-03 09:18:42] 2025-12-03 14:18:03,658 | INFO     | 
[2025-12-03 09:18:42] 2025-12-03 14:18:03,658 | INFO     | job summary report
[2025-12-03 09:18:42] 2025-12-03 14:18:03,658 | INFO     | --------------------------------------------------
[2025-12-03 09:18:42] 2025-12-03 14:18:03,658 | INFO     | PanDA job id: 6897863856
[2025-12-03 09:18:42] 2025-12-03 14:18:03,658 | INFO     | task id: 47556161
[2025-12-03 09:18:42] 2025-12-03 14:18:03,658 | INFO     | errors: (none)
[2025-12-03 09:18:42] 2025-12-03 14:18:03,659 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 09:18:42] 2025-12-03 14:18:03,659 | INFO     | pilot state: finished 
[2025-12-03 09:18:42] 2025-12-03 14:18:03,659 | INFO     | transexitcode: 0
[2025-12-03 09:18:42] 2025-12-03 14:18:03,659 | INFO     | exeerrorcode: 0
[2025-12-03 09:18:42] 2025-12-03 14:18:03,659 | INFO     | exeerrordiag: 
[2025-12-03 09:18:42] 2025-12-03 14:18:03,659 | INFO     | exitcode: 0
[2025-12-03 09:18:42] 2025-12-03 14:18:03,659 | INFO     | exitmsg: OK
[2025-12-03 09:18:42] 2025-12-03 14:18:03,659 | INFO     | cpuconsumptiontime: 523580 s
[2025-12-03 09:18:42] 2025-12-03 14:18:03,659 | INFO     | nevents: 1000
[2025-12-03 09:18:42] 2025-12-03 14:18:03,660 | INFO     | neventsw: 0
[2025-12-03 09:18:42] 2025-12-03 14:18:03,660 | INFO     | pid: 8753
[2025-12-03 09:18:42] 2025-12-03 14:18:03,660 | INFO     | pgrp: 8753
[2025-12-03 09:18:42] 2025-12-03 14:18:03,660 | INFO     | corecount: 8
[2025-12-03 09:18:42] 2025-12-03 14:18:03,660 | INFO     | event service: False
[2025-12-03 09:18:42] 2025-12-03 14:18:03,660 | INFO     | sizes: {0: 2284265, 1: 2284265, 5: 2284555, 11: 2284611, 67791: 2340395, 67796: 2349573, 67801: 2349763}
[2025-12-03 09:18:42] 2025-12-03 14:18:03,660 | INFO     | --------------------------------------------------
[2025-12-03 09:18:42] 2025-12-03 14:18:03,660 | INFO     | 
[2025-12-03 09:18:42] 2025-12-03 14:18:03,660 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-03 09:18:42] 2025-12-03 14:18:03,675 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 09:18:42] 2025-12-03 14:18:03,675 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 09:18:42] 2025-12-03 14:18:03,675 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 09:18:42] 2025-12-03 14:18:03,675 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 09:18:42] 2025-12-03 14:18:03,675 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 09:18:42] 2025-12-03 14:18:03,675 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 09:18:42] 2025-12-03 14:18:03,675 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 09:18:42] 2025-12-03 14:18:03,676 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 09:18:42] 2025-12-03 14:18:03,676 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 09:18:42] 2025-12-03 14:18:03,676 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 09:18:42] 2025-12-03 14:18:03,676 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 09:18:42] 2025-12-03 14:18:03,676 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 09:18:42] 2025-12-03 14:18:03,676 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 09:18:42] 2025-12-03 14:18:03,676 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 09:18:42] 2025-12-03 14:18:03,676 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 09:18:42] 2025-12-03 14:18:03,676 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 09:18:42] 2025-12-03 14:18:03,677 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 09:18:42] 2025-12-03 14:18:03,677 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 09:18:42] 2025-12-03 14:18:03,677 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 09:18:42] 2025-12-03 14:18:03,677 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 09:18:42] 2025-12-03 14:18:03,677 | INFO     | job 6897863856 has completed (purged errors)
[2025-12-03 09:18:42] 2025-12-03 14:18:03,677 | INFO     | overall cleanup function is called
[2025-12-03 09:18:42] 2025-12-03 14:18:04,690 | INFO     | --- collectZombieJob: --- 10, [8753]
[2025-12-03 09:18:42] 2025-12-03 14:18:04,690 | INFO     | zombie collector waiting for pid 8753
[2025-12-03 09:18:42] 2025-12-03 14:18:04,690 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 09:18:42] 2025-12-03 14:18:04,690 | INFO     | collected zombie processes
[2025-12-03 09:18:42] 2025-12-03 14:18:04,690 | INFO     | will attempt to kill all subprocesses of pid=8753
[2025-12-03 09:18:42] 2025-12-03 14:18:04,803 | INFO     | process IDs to be killed: [8753] (in reverse order)
[2025-12-03 09:18:42] 2025-12-03 14:18:04,842 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 09:18:42] 2025-12-03 14:18:04,843 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 09:18:42] 2025-12-03 14:18:04,848 | INFO     | did not find any defunct processes belonging to 8753
[2025-12-03 09:18:42] 2025-12-03 14:18:04,853 | INFO     | did not find any defunct processes belonging to 8753
[2025-12-03 09:18:42] 2025-12-03 14:18:04,855 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 09:18:42] 2025-12-03 14:18:04,856 | INFO     | ready for new job
[2025-12-03 09:18:42] 2025-12-03 14:18:04,856 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 09:18:42] 2025-12-03 14:18:04,859 | INFO     | ***************************************
[2025-12-03 09:18:42] 2025-12-03 14:18:04,859 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 09:18:42] 2025-12-03 14:18:04,859 | INFO     | ***************************************
[2025-12-03 09:18:42] 2025-12-03 14:18:04,860 | INFO     | 
[2025-12-03 09:18:42] 2025-12-03 14:18:04,860 | INFO     | architecture information:
[2025-12-03 09:18:42] 2025-12-03 14:18:04,861 | INFO     | executing command: cat /etc/os-release
[2025-12-03 09:18:42] 2025-12-03 14:18:04,871 | INFO     | cat /etc/os-release:
[2025-12-03 09:18:42] NAME="CentOS Linux"
[2025-12-03 09:18:42] VERSION="7 (Core)"
[2025-12-03 09:18:42] ID="centos"
[2025-12-03 09:18:42] ID_LIKE="rhel fedora"
[2025-12-03 09:18:42] VERSION_ID="7"
[2025-12-03 09:18:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 09:18:42] ANSI_COLOR="0;31"
[2025-12-03 09:18:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 09:18:42] HOME_URL="https://www.centos.org/"
[2025-12-03 09:18:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 09:18:42] 
[2025-12-03 09:18:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 09:18:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 09:18:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 09:18:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 09:18:42] 
[2025-12-03 09:18:42] 2025-12-03 14:18:04,872 | INFO     | ***************************************
[2025-12-03 09:18:42] 2025-12-03 14:18:05,375 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-03 09:18:42] 2025-12-03 14:18:05,389 | INFO     | sufficient remaining disk space (27497857024 B)
[2025-12-03 09:18:42] 2025-12-03 14:18:05,392 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 09:18:42] 2025-12-03 14:18:05,392 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 09:18:42] 2025-12-03 14:18:05,392 | INFO     | update_server=False
[2025-12-03 09:18:42] 2025-12-03 14:18:05,392 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 09:18:42] 2025-12-03 14:18:05,434 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-03 09:18:42] 2025-12-03 14:18:05,435 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-03 09:18:42] 2025-12-03 14:18:05,435 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 09:18:42] 2025-12-03 14:18:05,435 | INFO     | will abort loop
[2025-12-03 09:18:42] 2025-12-03 14:18:05,863 | INFO     | all data control threads have been joined
[2025-12-03 09:18:42] 2025-12-03 14:18:06,132 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 09:18:42] 2025-12-03 14:18:06,244 | INFO     | all job control threads have been joined
[2025-12-03 09:18:42] 2025-12-03 14:18:06,398 | INFO     | [job] retrieve thread has finished
[2025-12-03 09:18:42] 2025-12-03 14:18:06,441 | INFO     | [job] job monitor thread has finished
[2025-12-03 09:18:42] 2025-12-03 14:18:06,677 | INFO     | all payload control threads have been joined
[2025-12-03 09:18:42] 2025-12-03 14:18:06,865 | INFO     | [data] control thread has finished
[2025-12-03 09:18:42] 2025-12-03 14:18:07,023 | INFO     | [payload] validate_post thread has finished
[2025-12-03 09:18:42] 2025-12-03 14:18:07,249 | INFO     | [job] control thread has finished
[2025-12-03 09:18:42] 2025-12-03 14:18:07,279 | INFO     | [data] copytool_in thread has finished
[2025-12-03 09:18:42] 2025-12-03 14:18:07,347 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 09:18:42] 2025-12-03 14:18:07,482 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 09:18:42] 2025-12-03 14:18:07,566 | INFO     | [job] validate thread has finished
[2025-12-03 09:18:42] 2025-12-03 14:18:07,575 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 09:18:42] 2025-12-03 14:18:07,682 | INFO     | [payload] control thread has finished
[2025-12-03 09:18:42] 2025-12-03 14:18:07,858 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 09:18:42] 2025-12-03 14:18:07,943 | INFO     | [payload] failed_post thread has finished
[2025-12-03 09:18:42] 2025-12-03 14:18:08,137 | INFO     | [data] copytool_out thread has finished
[2025-12-03 09:18:42] 2025-12-03 14:18:08,325 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 09:18:42] 2025-12-03 14:18:08,707 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 09:18:42] 2025-12-03 14:18:09,331 | INFO     | [job] queue monitor thread has finished
[2025-12-03 09:18:42] 2025-12-03 14:18:12,713 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 09:18:42] 2025-12-03 14:18:35,626 | INFO     | PID=21923 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 09:18:42] 2025-12-03 14:18:35,626 | INFO     | .. there are 2 such processes running
[2025-12-03 09:18:42] 2025-12-03 14:18:35,626 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 09:18:42] 2025-12-03 14:18:35,626 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 09:18:42] 2025-12-03 14:18:35,626 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 09:18:42] 2025-12-03 14:18:35,973 | INFO     | [monitor] cgroup control has ended
[2025-12-03 09:18:42] 2025-12-03 14:18:37,163 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139748128470848)>', '<ExcThread(monitor, started 139747380926208)>']
[2025-12-03 09:18:42] 2025-12-03 14:18:37,635 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 09:18:42] 2025-12-03 14:18:37,636 | INFO     | [monitor] control thread has ended
[2025-12-03 09:18:42] 2025-12-03 14:18:42,183 | INFO     | all workflow threads have been joined
[2025-12-03 09:18:42] 2025-12-03 14:18:42,183 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 09:18:42] 2025-12-03 14:18:42,183 | INFO     | traces error code: 0
[2025-12-03 09:18:42] 2025-12-03 14:18:42,183 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 09:18:42] 2025-12-03 14:18:42,262 [wrapper] ==== pilot stdout END ====
[2025-12-03 09:18:42] 2025-12-03 14:18:42,264 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 09:18:42] 2025-12-03 14:18:42,266 [wrapper] pilotpid: 21923
[2025-12-03 09:18:42] 2025-12-03 14:18:42,268 [wrapper] Pilot exit status: 0
[2025-12-03 09:18:42] 2025-12-03 14:18:42,275 [wrapper] pandaids: 6897863856 6897863856
[2025-12-03 09:18:42] 2025-12-03 14:18:42,301 [wrapper] cleanup supervisor_pilot 24164 21924
[2025-12-03 09:18:42] 2025-12-03 14:18:42,303 [wrapper] Test setup, not cleaning
[2025-12-03 09:18:42] 2025-12-03 14:18:42,306 [wrapper] apfmon messages muted
[2025-12-03 09:18:42] 2025-12-03 14:18:42,308 [wrapper] ==== wrapper stdout END ====
[2025-12-03 09:18:42] 2025-12-03 14:18:42,311 [wrapper] ==== wrapper stderr END ====
[2025-12-03 09:18:42]  *** Error codes and diagnostics ***
[2025-12-03 09:18:42]     "exeErrorCode": 0,
[2025-12-03 09:18:42]     "exeErrorDiag": "",
[2025-12-03 09:18:42]     "pilotErrorCode": 0,
[2025-12-03 09:18:42]     "pilotErrorDiag": "",
[2025-12-03 09:18:42]  *** Listing of results directory ***
[2025-12-03 09:18:42] total 1707212
[2025-12-03 09:18:42] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-03 09:18:42] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-12-03 09:18:42] -rwx------ 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-12-03 09:18:42] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-12-03 09:18:42] -rw-r--r-- 1 boincer umatlas       100 Dec  2 00:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 09:18:42] -rwxr-xr-x 1 boincer umatlas      7986 Dec  2 00:47 run_atlas
[2025-12-03 09:18:42] -rw-r--r-- 1 boincer umatlas       105 Dec  2 00:47 job.xml
[2025-12-03 09:18:42] -rw-r--r-- 3 boincer umatlas 407261322 Dec  2 00:47 EVNT.47483658._002335.pool.root.1
[2025-12-03 09:18:42] -rw-r--r-- 3 boincer umatlas 407261322 Dec  2 00:47 ATLAS.root_0
[2025-12-03 09:18:42] -rw-r--r-- 2 boincer umatlas     15847 Dec  2 00:47 start_atlas.sh
[2025-12-03 09:18:42] drwxrwx--x 2 boincer umatlas      4096 Dec  2 00:47 shared
[2025-12-03 09:18:42] -rw-r--r-- 2 boincer umatlas    590104 Dec  2 00:47 input.tar.gz
[2025-12-03 09:18:42] -rw-r--r-- 1 boincer umatlas         0 Dec  2 00:47 boinc_lockfile
[2025-12-03 09:18:42] -rw-r--r-- 1 boincer umatlas      2786 Dec  2 14:27 pandaJob.out
[2025-12-03 09:18:42] -rw------- 1 boincer umatlas        57 Dec  2 14:27 setup.sh.local
[2025-12-03 09:18:42] -rw------- 1 boincer umatlas    989224 Dec  2 14:27 agis_schedconf.cvmfs.json
[2025-12-03 09:18:42] -rw-r--r-- 1 boincer umatlas       534 Dec  3 09:07 boinc_task_state.xml
[2025-12-03 09:18:42] -rw-r--r-- 1 boincer umatlas      5954 Dec  3 09:09 init_data.xml
[2025-12-03 09:18:42] -rw------- 1 boincer umatlas 906413220 Dec  3 09:17 HITS.47556161._003176.pool.root.1
[2025-12-03 09:18:42] -rw------- 1 boincer umatlas        96 Dec  3 09:17 pilot_heartbeat.json
[2025-12-03 09:18:42] -rw------- 1 boincer umatlas      1065 Dec  3 09:17 memory_monitor_summary.json
[2025-12-03 09:18:42] -rw------- 1 boincer umatlas   1516240 Dec  3 09:17 agis_ddmendpoints.agis.ALL.json
[2025-12-03 09:18:42] -rw------- 1 boincer umatlas   2277503 Dec  3 09:17 log.47556161._003176.job.log.tgz.1
[2025-12-03 09:18:42] -rw------- 1 boincer umatlas      8672 Dec  3 09:18 heartbeat.json
[2025-12-03 09:18:42] -rw-r--r-- 1 boincer umatlas        30 Dec  3 09:18 wrapper_checkpoint.txt
[2025-12-03 09:18:42] -rw-r--r-- 1 boincer umatlas      8192 Dec  3 09:18 boinc_mmap_file
[2025-12-03 09:18:42] -rw------- 1 boincer umatlas      5007 Dec  3 09:18 pilotlog.txt
[2025-12-03 09:18:42] -rw------- 1 boincer umatlas   9381579 Dec  3 09:18 log.47556161._003176.job.log.1
[2025-12-03 09:18:42] -rw------- 1 boincer umatlas       353 Dec  3 09:18 output.list
[2025-12-03 09:18:42] -rw-r--r-- 1 boincer umatlas       620 Dec  3 09:18 runtime_log
[2025-12-03 09:18:42] -rw------- 1 boincer umatlas  11683840 Dec  3 09:18 result.tar.gz
[2025-12-03 09:18:42] -rw-r--r-- 1 boincer umatlas      9423 Dec  3 09:18 runtime_log.err
[2025-12-03 09:18:42] -rw------- 1 boincer umatlas       792 Dec  3 09:18 MXhKDmYbBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtdMKDmWOuCXm.diag
[2025-12-03 09:18:42] -rw-r--r-- 1 boincer umatlas     23421 Dec  3 09:18 stderr.txt
[2025-12-03 09:18:42] HITS file was successfully produced:
[2025-12-03 09:18:42] -rw------- 1 boincer umatlas 906413220 Dec  3 09:17 shared/HITS.pool.root.1
[2025-12-03 09:18:42]  *** Contents of shared directory: ***
[2025-12-03 09:18:42] total 1294904
[2025-12-03 09:18:42] -rw-r--r-- 3 boincer umatlas 407261322 Dec  2 00:47 ATLAS.root_0
[2025-12-03 09:18:42] -rw-r--r-- 2 boincer umatlas     15847 Dec  2 00:47 start_atlas.sh
[2025-12-03 09:18:42] -rw-r--r-- 2 boincer umatlas    590104 Dec  2 00:47 input.tar.gz
[2025-12-03 09:18:42] -rw------- 1 boincer umatlas 906413220 Dec  3 09:17 HITS.pool.root.1
[2025-12-03 09:18:42] -rw------- 1 boincer umatlas  11683840 Dec  3 09:18 result.tar.gz
09:18:44 (10874): run_atlas exited; CPU time 520844.218528
09:18:44 (10874): called boinc_finish(0)

</stderr_txt>
]]>

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