Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:43:22 (19583): wrapper (7.7.26015): starting
00:43:22 (19583): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 00:43:22] Arguments: --nthreads 8
[2025-12-02 00:43:22] Threads: 8
[2025-12-02 00:43:22] Checking for CVMFS
[2025-12-02 00:43:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 00:43:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 00:43:23] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 00:43:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 00:43:23] 2.11.2.0 2880 161632 88148 153545 3 82 16171629 20275200 1 130560 0 62789316 99.972 5960901 23006 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 00:43:23] CVMFS is ok
[2025-12-02 00:43:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 00:43:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 00:43:23] Further information can be found at the LHC@home message board.
[2025-12-02 00:43:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 00:43:23] Checking for apptainer binary...
[2025-12-02 00:43:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 00:43:23] Running /usr/bin/apptainer --version
[2025-12-02 00:43:23] apptainer version 1.3.2-1.el7
[2025-12-02 00:43:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 00:43:24] c-115-10.aglt2.org
[2025-12-02 00:43:24] apptainer works
[2025-12-02 00:43:24] Set ATHENA_PROC_NUMBER=8
[2025-12-02 00:43:24] Set ATHENA_CORE_NUMBER=8
[2025-12-02 00:43:24] Starting ATLAS job with PandaID=6896912303
[2025-12-02 00:43:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
01:11:41 (19616): wrapper (7.7.26015): starting
01:11:41 (19616): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 01:11:41] Arguments: --nthreads 8
[2025-12-02 01:11:41] Threads: 8
[2025-12-02 01:11:41] This job has been restarted, cleaning up previous attempt
[2025-12-02 01:11:41] Checking for CVMFS
[2025-12-02 01:11:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 01:11:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 01:11:42] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 01:11:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 01:11:42] 2.11.2.0 2880 161661 87012 153545 3 109 16235106 20275200 1 130560 0 62856540 99.972 5964237 23010 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 01:11:42] CVMFS is ok
[2025-12-02 01:11:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 01:11:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 01:11:42] Further information can be found at the LHC@home message board.
[2025-12-02 01:11:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 01:11:42] Checking for apptainer binary...
[2025-12-02 01:11:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 01:11:42] Running /usr/bin/apptainer --version
[2025-12-02 01:11:42] apptainer version 1.3.2-1.el7
[2025-12-02 01:11:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 01:11:44] c-115-10.aglt2.org
[2025-12-02 01:11:44] apptainer works
[2025-12-02 01:11:44] Set ATHENA_PROC_NUMBER=8
[2025-12-02 01:11:44] Set ATHENA_CORE_NUMBER=8
[2025-12-02 01:11:44] Starting ATLAS job with PandaID=6896912303
[2025-12-02 01:11:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 11:06:07]  *** The last 200 lines of the pilot log: ***
[2025-12-02 11:06:07] 2025-12-02 16:05:22,551 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 11:06:07] 2025-12-02 16:05:24,344 | INFO     | time since job start (35603s) is within the limit (172800.0s)
[2025-12-02 11:06:07] 2025-12-02 16:05:25,055 | INFO     | monitor loop #2609: job 0:6896912303 is in state 'finished'
[2025-12-02 11:06:07] 2025-12-02 16:05:25,055 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 11:06:07] 2025-12-02 16:05:25,068 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-02 11:06:07] 2025-12-02 16:05:25,072 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1729.125
[2025-12-02 11:06:07] 2025-12-02 16:05:25,075 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896912303/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 11:06:07] 2025-12-02 16:05:25,076 | INFO     | extracted standard info from prmon json
[2025-12-02 11:06:07] 2025-12-02 16:05:25,076 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 11:06:07] 2025-12-02 16:05:25,076 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 11:06:07] 2025-12-02 16:05:25,086 | INFO     | fitting pss+swap vs Time
[2025-12-02 11:06:07] 2025-12-02 16:05:25,087 | INFO     | sum of square deviations: 61444780546.54525
[2025-12-02 11:06:07] 2025-12-02 16:05:25,094 | INFO     | sum of deviations: 687839111064.182
[2025-12-02 11:06:07] 2025-12-02 16:05:25,094 | INFO     | mean x: 1764673711.5454545
[2025-12-02 11:06:07] 2025-12-02 16:05:25,094 | INFO     | mean y: 3571380.4459691253
[2025-12-02 11:06:07] 2025-12-02 16:05:25,094 | INFO     | intersect: -19750939682.512054
[2025-12-02 11:06:07] 2025-12-02 16:05:25,095 | INFO     | chi2: 5.013572318402154
[2025-12-02 11:06:07] 2025-12-02 16:05:25,096 | INFO     | sum of square deviations: 59877490007.545044
[2025-12-02 11:06:07] 2025-12-02 16:05:25,102 | INFO     | sum of deviations: 879522658160.2101
[2025-12-02 11:06:07] 2025-12-02 16:05:25,102 | INFO     | mean x: 1764673559.050173
[2025-12-02 11:06:07] 2025-12-02 16:05:25,102 | INFO     | mean y: 3590002.4065743946
[2025-12-02 11:06:07] 2025-12-02 16:05:25,103 | INFO     | intersect: -25917175534.780663
[2025-12-02 11:06:07] 2025-12-02 16:05:25,103 | INFO     | chi2: 2.8142404488690698
[2025-12-02 11:06:07] 2025-12-02 16:05:25,103 | INFO     | current chi2=2.8142404488690698 (change=43.867560490959875 %)
[2025-12-02 11:06:07] 2025-12-02 16:05:25,104 | INFO     | sum of square deviations: 58337048557.6266
[2025-12-02 11:06:07] 2025-12-02 16:05:25,110 | INFO     | sum of deviations: 898130505888.4171
[2025-12-02 11:06:07] 2025-12-02 16:05:25,110 | INFO     | mean x: 1764673406.5532286
[2025-12-02 11:06:07] 2025-12-02 16:05:25,111 | INFO     | mean y: 3591827.478184991
[2025-12-02 11:06:07] 2025-12-02 16:05:25,111 | INFO     | intersect: -27164512465.454666
[2025-12-02 11:06:07] 2025-12-02 16:05:25,111 | INFO     | chi2: 2.6715436447462344
[2025-12-02 11:06:07] 2025-12-02 16:05:25,111 | INFO     | current chi2=2.6715436447462344 (change=5.070526371695762 %)
[2025-12-02 11:06:07] 2025-12-02 16:05:25,112 | INFO     | right removable region: 572
[2025-12-02 11:06:07] 2025-12-02 16:05:25,112 | INFO     | sum of square deviations: 59877296027.54503
[2025-12-02 11:06:07] 2025-12-02 16:05:25,119 | INFO     | sum of deviations: 476831574168.0513
[2025-12-02 11:06:07] 2025-12-02 16:05:25,119 | INFO     | mean x: 1764673864.050173
[2025-12-02 11:06:07] 2025-12-02 16:05:25,119 | INFO     | mean y: 3591871.480968858
[2025-12-02 11:06:07] 2025-12-02 16:05:25,119 | INFO     | intersect: -14049350935.107576
[2025-12-02 11:06:07] 2025-12-02 16:05:25,120 | INFO     | chi2: 2.517615672973324
[2025-12-02 11:06:07] 2025-12-02 16:05:25,120 | INFO     | current chi2=2.517615672973324 (change=49.78399605940664 %)
[2025-12-02 11:06:07] 2025-12-02 16:05:25,120 | INFO     | sum of square deviations: 58336695733.518364
[2025-12-02 11:06:07] 2025-12-02 16:05:25,127 | INFO     | sum of deviations: 427897426552.5763
[2025-12-02 11:06:07] 2025-12-02 16:05:25,127 | INFO     | mean x: 1764674016.5549738
[2025-12-02 11:06:07] 2025-12-02 16:05:25,127 | INFO     | mean y: 3596712.3944153576
[2025-12-02 11:06:07] 2025-12-02 16:05:25,127 | INFO     | intersect: -12940219540.712566
[2025-12-02 11:06:07] 2025-12-02 16:05:25,128 | INFO     | chi2: 2.4503617923065373
[2025-12-02 11:06:07] 2025-12-02 16:05:25,128 | INFO     | current chi2=2.4503617923065373 (change=2.6713323001901736 %)
[2025-12-02 11:06:07] 2025-12-02 16:05:25,128 | INFO     | left removable region: 20
[2025-12-02 11:06:07] 2025-12-02 16:05:25,129 | INFO     | sum of square deviations: 52155031306.78085
[2025-12-02 11:06:07] 2025-12-02 16:05:25,136 | INFO     | sum of deviations: 572859467516.5945
[2025-12-02 11:06:07] 2025-12-02 16:05:25,136 | INFO     | mean x: 1764673986.0634058
[2025-12-02 11:06:07] 2025-12-02 16:05:25,136 | INFO     | mean y: 3624462.811594203
[2025-12-02 11:06:07] 2025-12-02 16:05:25,136 | INFO     | intersect: -19379169002.50911
[2025-12-02 11:06:07] 2025-12-02 16:05:25,137 | INFO     | chi2: 0.0582089745146394
[2025-12-02 11:06:07] 2025-12-02 16:05:25,137 | INFO     | current memory leak: 10.98 B/s (using 552 data points, chi2=0.06)
[2025-12-02 11:06:07] 2025-12-02 16:05:25,137 | INFO     | could have reported an average CPU frequency of 2376 MHz (23 samples)
[2025-12-02 11:06:07] 2025-12-02 16:05:25,138 | INFO     | ..............................
[2025-12-02 11:06:07] 2025-12-02 16:05:25,138 | INFO     | . Timing measurements:
[2025-12-02 11:06:07] 2025-12-02 16:05:25,138 | INFO     | . get job = 0 s
[2025-12-02 11:06:07] 2025-12-02 16:05:25,138 | INFO     | . initial setup = 1 s
[2025-12-02 11:06:07] 2025-12-02 16:05:25,138 | INFO     | . payload setup = 15 s
[2025-12-02 11:06:07] 2025-12-02 16:05:25,138 | INFO     | . stage-in = 0 s
[2025-12-02 11:06:07] 2025-12-02 16:05:25,138 | INFO     | . payload execution = 35555 s
[2025-12-02 11:06:07] 2025-12-02 16:05:25,138 | INFO     | . stage-out = 3 s
[2025-12-02 11:06:07] 2025-12-02 16:05:25,138 | INFO     | . log creation = 0 s
[2025-12-02 11:06:07] 2025-12-02 16:05:25,138 | INFO     | ..............................
[2025-12-02 11:06:07] 2025-12-02 16:05:25,227 | INFO     | 
[2025-12-02 11:06:07] 2025-12-02 16:05:25,227 | INFO     | job summary report
[2025-12-02 11:06:07] 2025-12-02 16:05:25,227 | INFO     | --------------------------------------------------
[2025-12-02 11:06:07] 2025-12-02 16:05:25,227 | INFO     | PanDA job id: 6896912303
[2025-12-02 11:06:07] 2025-12-02 16:05:25,227 | INFO     | task id: 47531058
[2025-12-02 11:06:07] 2025-12-02 16:05:25,227 | INFO     | errors: (none)
[2025-12-02 11:06:07] 2025-12-02 16:05:25,228 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 11:06:07] 2025-12-02 16:05:25,228 | INFO     | pilot state: finished 
[2025-12-02 11:06:07] 2025-12-02 16:05:25,228 | INFO     | transexitcode: 0
[2025-12-02 11:06:07] 2025-12-02 16:05:25,228 | INFO     | exeerrorcode: 0
[2025-12-02 11:06:07] 2025-12-02 16:05:25,228 | INFO     | exeerrordiag: 
[2025-12-02 11:06:07] 2025-12-02 16:05:25,228 | INFO     | exitcode: 0
[2025-12-02 11:06:07] 2025-12-02 16:05:25,229 | INFO     | exitmsg: OK
[2025-12-02 11:06:07] 2025-12-02 16:05:25,229 | INFO     | cpuconsumptiontime: 275459 s
[2025-12-02 11:06:07] 2025-12-02 16:05:25,229 | INFO     | nevents: 1000
[2025-12-02 11:06:07] 2025-12-02 16:05:25,229 | INFO     | neventsw: 0
[2025-12-02 11:06:07] 2025-12-02 16:05:25,229 | INFO     | pid: 30845
[2025-12-02 11:06:07] 2025-12-02 16:05:25,230 | INFO     | pgrp: 30845
[2025-12-02 11:06:07] 2025-12-02 16:05:25,230 | INFO     | corecount: 8
[2025-12-02 11:06:07] 2025-12-02 16:05:25,230 | INFO     | event service: False
[2025-12-02 11:06:07] 2025-12-02 16:05:25,230 | INFO     | sizes: {0: 2284279, 1: 2284478, 6: 2284740, 11: 2284768, 35574: 2345035, 35577: 2354241, 35586: 2354431}
[2025-12-02 11:06:07] 2025-12-02 16:05:25,230 | INFO     | --------------------------------------------------
[2025-12-02 11:06:07] 2025-12-02 16:05:25,230 | INFO     | 
[2025-12-02 11:06:07] 2025-12-02 16:05:25,231 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-02 11:06:07] 2025-12-02 16:05:25,262 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 11:06:07] 2025-12-02 16:05:25,263 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 11:06:07] 2025-12-02 16:05:25,263 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 11:06:07] 2025-12-02 16:05:25,263 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 11:06:07] 2025-12-02 16:05:25,263 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 11:06:07] 2025-12-02 16:05:25,263 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 11:06:07] 2025-12-02 16:05:25,264 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 11:06:07] 2025-12-02 16:05:25,264 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 11:06:07] 2025-12-02 16:05:25,264 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 11:06:07] 2025-12-02 16:05:25,264 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 11:06:07] 2025-12-02 16:05:25,264 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 11:06:07] 2025-12-02 16:05:25,265 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 11:06:07] 2025-12-02 16:05:25,265 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 11:06:07] 2025-12-02 16:05:25,265 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 11:06:07] 2025-12-02 16:05:25,265 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 11:06:07] 2025-12-02 16:05:25,265 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 11:06:07] 2025-12-02 16:05:25,265 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 11:06:07] 2025-12-02 16:05:25,266 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 11:06:07] 2025-12-02 16:05:25,266 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 11:06:07] 2025-12-02 16:05:25,266 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 11:06:07] 2025-12-02 16:05:25,266 | INFO     | job 6896912303 has completed (purged errors)
[2025-12-02 11:06:07] 2025-12-02 16:05:25,267 | INFO     | overall cleanup function is called
[2025-12-02 11:06:07] 2025-12-02 16:05:26,280 | INFO     | --- collectZombieJob: --- 10, [30845]
[2025-12-02 11:06:07] 2025-12-02 16:05:26,280 | INFO     | zombie collector waiting for pid 30845
[2025-12-02 11:06:07] 2025-12-02 16:05:26,280 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 11:06:07] 2025-12-02 16:05:26,280 | INFO     | collected zombie processes
[2025-12-02 11:06:07] 2025-12-02 16:05:26,281 | INFO     | will attempt to kill all subprocesses of pid=30845
[2025-12-02 11:06:07] 2025-12-02 16:05:26,367 | INFO     | process IDs to be killed: [30845] (in reverse order)
[2025-12-02 11:06:07] 2025-12-02 16:05:26,423 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 11:06:07] 2025-12-02 16:05:26,424 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 11:06:07] 2025-12-02 16:05:26,428 | INFO     | did not find any defunct processes belonging to 30845
[2025-12-02 11:06:07] 2025-12-02 16:05:26,431 | INFO     | did not find any defunct processes belonging to 30845
[2025-12-02 11:06:07] 2025-12-02 16:05:26,434 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 11:06:07] 2025-12-02 16:05:26,434 | INFO     | ready for new job
[2025-12-02 11:06:07] 2025-12-02 16:05:26,434 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 11:06:07] 2025-12-02 16:05:26,437 | INFO     | ***************************************
[2025-12-02 11:06:07] 2025-12-02 16:05:26,437 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 11:06:07] 2025-12-02 16:05:26,438 | INFO     | ***************************************
[2025-12-02 11:06:07] 2025-12-02 16:05:26,438 | INFO     | 
[2025-12-02 11:06:07] 2025-12-02 16:05:26,438 | INFO     | architecture information:
[2025-12-02 11:06:07] 2025-12-02 16:05:26,439 | INFO     | executing command: cat /etc/os-release
[2025-12-02 11:06:07] 2025-12-02 16:05:26,457 | INFO     | cat /etc/os-release:
[2025-12-02 11:06:07] NAME="CentOS Linux"
[2025-12-02 11:06:07] VERSION="7 (Core)"
[2025-12-02 11:06:07] ID="centos"
[2025-12-02 11:06:07] ID_LIKE="rhel fedora"
[2025-12-02 11:06:07] VERSION_ID="7"
[2025-12-02 11:06:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 11:06:07] ANSI_COLOR="0;31"
[2025-12-02 11:06:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 11:06:07] HOME_URL="https://www.centos.org/"
[2025-12-02 11:06:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 11:06:07] 
[2025-12-02 11:06:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 11:06:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 11:06:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 11:06:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 11:06:07] 
[2025-12-02 11:06:07] 2025-12-02 16:05:26,458 | INFO     | ***************************************
[2025-12-02 11:06:07] 2025-12-02 16:05:26,961 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-02 11:06:07] 2025-12-02 16:05:26,982 | INFO     | sufficient remaining disk space (17747148800 B)
[2025-12-02 11:06:07] 2025-12-02 16:05:26,983 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 11:06:07] 2025-12-02 16:05:26,983 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 11:06:07] 2025-12-02 16:05:26,983 | INFO     | update_server=False
[2025-12-02 11:06:07] 2025-12-02 16:05:26,984 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 11:06:07] 2025-12-02 16:05:26,984 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 11:06:07] 2025-12-02 16:05:26,985 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 11:06:07] 2025-12-02 16:05:26,985 | INFO     | aborting loop
[2025-12-02 11:06:07] 2025-12-02 16:05:26,985 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 11:06:07] 2025-12-02 16:05:26,986 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 11:06:07] 2025-12-02 16:05:27,051 | INFO     | all job control threads have been joined
[2025-12-02 11:06:07] 2025-12-02 16:05:27,626 | INFO     | all payload control threads have been joined
[2025-12-02 11:06:07] 2025-12-02 16:05:27,988 | INFO     | [job] job monitor thread has finished
[2025-12-02 11:06:07] 2025-12-02 16:05:27,988 | INFO     | [job] queue monitor thread has finished
[2025-12-02 11:06:07] 2025-12-02 16:05:27,989 | INFO     | [job] retrieve thread has finished
[2025-12-02 11:06:07] 2025-12-02 16:05:28,050 | INFO     | all data control threads have been joined
[2025-12-02 11:06:07] 2025-12-02 16:05:28,056 | INFO     | [job] control thread has finished
[2025-12-02 11:06:07] 2025-12-02 16:05:28,265 | INFO     | [payload] validate_post thread has finished
[2025-12-02 11:06:07] 2025-12-02 16:05:28,290 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 11:06:07] 2025-12-02 16:05:28,459 | INFO     | [job] validate thread has finished
[2025-12-02 11:06:07] 2025-12-02 16:05:28,632 | INFO     | [payload] control thread has finished
[2025-12-02 11:06:07] 2025-12-02 16:05:28,764 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 11:06:07] 2025-12-02 16:05:28,990 | INFO     | [data] copytool_out thread has finished
[2025-12-02 11:06:07] 2025-12-02 16:05:29,033 | INFO     | [payload] failed_post thread has finished
[2025-12-02 11:06:07] 2025-12-02 16:05:29,052 | INFO     | [data] control thread has finished
[2025-12-02 11:06:07] 2025-12-02 16:05:29,208 | INFO     | [data] copytool_in thread has finished
[2025-12-02 11:06:07] 2025-12-02 16:05:29,296 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 11:06:07] 2025-12-02 16:05:29,469 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 11:06:07] 2025-12-02 16:05:30,992 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 11:06:07] 2025-12-02 16:05:57,559 | INFO     | PID=23669 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 11:06:07] 2025-12-02 16:05:57,560 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 11:06:07] 2025-12-02 16:05:57,561 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 11:06:07] 2025-12-02 16:05:57,561 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 11:06:07] 2025-12-02 16:06:00,380 | INFO     | [monitor] cgroup control has ended
[2025-12-02 11:06:07] 2025-12-02 16:06:02,107 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139771857000256)>', '<ExcThread(monitor, started 139770910992128)>']
[2025-12-02 11:06:07] 2025-12-02 16:06:02,580 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 11:06:07] 2025-12-02 16:06:02,581 | INFO     | [monitor] control thread has ended
[2025-12-02 11:06:07] 2025-12-02 16:06:07,111 | INFO     | all workflow threads have been joined
[2025-12-02 11:06:07] 2025-12-02 16:06:07,111 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 11:06:07] 2025-12-02 16:06:07,112 | INFO     | traces error code: 0
[2025-12-02 11:06:07] 2025-12-02 16:06:07,113 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 11:06:07] 2025-12-02 16:06:07,232 [wrapper] ==== pilot stdout END ====
[2025-12-02 11:06:07] 2025-12-02 16:06:07,237 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 11:06:07] 2025-12-02 16:06:07,241 [wrapper] pilotpid: 23669
[2025-12-02 11:06:07] 2025-12-02 16:06:07,246 [wrapper] Pilot exit status: 0
[2025-12-02 11:06:07] 2025-12-02 16:06:07,263 [wrapper] pandaids: 6896912303 6896912303
[2025-12-02 11:06:07] 2025-12-02 16:06:07,315 [wrapper] cleanup supervisor_pilot 11741 23670
[2025-12-02 11:06:07] 2025-12-02 16:06:07,320 [wrapper] Test setup, not cleaning
[2025-12-02 11:06:07] 2025-12-02 16:06:07,326 [wrapper] apfmon messages muted
[2025-12-02 11:06:07] 2025-12-02 16:06:07,330 [wrapper] ==== wrapper stdout END ====
[2025-12-02 11:06:07] 2025-12-02 16:06:07,335 [wrapper] ==== wrapper stderr END ====
[2025-12-02 11:06:07]  *** Error codes and diagnostics ***
[2025-12-02 11:06:07]     "exeErrorCode": 0,
[2025-12-02 11:06:07]     "exeErrorDiag": "",
[2025-12-02 11:06:07]     "pilotErrorCode": 0,
[2025-12-02 11:06:07]     "pilotErrorDiag": "",
[2025-12-02 11:06:07]  *** Listing of results directory ***
[2025-12-02 11:06:07] total 1445740
[2025-12-02 11:06:07] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-02 11:06:07] -rw-r--r-- 1 boincer umatlas    576529 Nov 28 05:28 pilot3.tar.gz
[2025-12-02 11:06:07] -rwx------ 1 boincer umatlas     36292 Nov 28 05:28 runpilot2-wrapper.sh
[2025-12-02 11:06:07] -rw-r--r-- 1 boincer umatlas      5112 Nov 28 05:32 queuedata.json
[2025-12-02 11:06:07] -rw-r--r-- 1 boincer umatlas       100 Dec  2 00:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 11:06:07] -rwxr-xr-x 1 boincer umatlas      7986 Dec  2 00:43 run_atlas
[2025-12-02 11:06:07] -rw-r--r-- 1 boincer umatlas       105 Dec  2 00:43 job.xml
[2025-12-02 11:06:07] -rw-r--r-- 3 boincer umatlas 376416094 Dec  2 00:43 EVNT.47531050._000430.pool.root.1
[2025-12-02 11:06:07] -rw-r--r-- 3 boincer umatlas 376416094 Dec  2 00:43 ATLAS.root_0
[2025-12-02 11:06:07] -rw-r--r-- 2 boincer umatlas     15847 Dec  2 00:43 start_atlas.sh
[2025-12-02 11:06:07] drwxrwx--x 2 boincer umatlas      4096 Dec  2 00:43 shared
[2025-12-02 11:06:07] -rw-r--r-- 2 boincer umatlas    590117 Dec  2 00:43 input.tar.gz
[2025-12-02 11:06:07] -rw-r--r-- 1 boincer umatlas         0 Dec  2 00:43 boinc_lockfile
[2025-12-02 11:06:07] -rw-r--r-- 1 boincer umatlas      2879 Dec  2 01:11 pandaJob.out
[2025-12-02 11:06:07] -rw------- 1 boincer umatlas        57 Dec  2 01:11 setup.sh.local
[2025-12-02 11:06:07] -rw------- 1 boincer umatlas    992001 Dec  2 01:12 agis_schedconf.cvmfs.json
[2025-12-02 11:06:07] -rw-r--r-- 1 boincer umatlas       532 Dec  2 10:57 boinc_task_state.xml
[2025-12-02 11:06:07] -rw-r--r-- 1 boincer umatlas      5913 Dec  2 11:02 init_data.xml
[2025-12-02 11:06:07] -rw------- 1 boincer umatlas 709878418 Dec  2 11:04 HITS.47531058._000462.pool.root.1
[2025-12-02 11:06:07] -rw------- 1 boincer umatlas      1060 Dec  2 11:05 memory_monitor_summary.json
[2025-12-02 11:06:07] -rw------- 1 boincer umatlas   1516240 Dec  2 11:05 agis_ddmendpoints.agis.ALL.json
[2025-12-02 11:06:07] -rw------- 1 boincer umatlas   1970320 Dec  2 11:05 log.47531058._000462.job.log.tgz.1
[2025-12-02 11:06:07] -rw------- 1 boincer umatlas        96 Dec  2 11:05 pilot_heartbeat.json
[2025-12-02 11:06:07] -rw------- 1 boincer umatlas     27595 Dec  2 11:05 heartbeat.json
[2025-12-02 11:06:07] -rw-r--r-- 1 boincer umatlas      8192 Dec  2 11:05 boinc_mmap_file
[2025-12-02 11:06:07] -rw-r--r-- 1 boincer umatlas        29 Dec  2 11:05 wrapper_checkpoint.txt
[2025-12-02 11:06:07] -rw------- 1 boincer umatlas      4746 Dec  2 11:06 pilotlog.txt
[2025-12-02 11:06:07] -rw------- 1 boincer umatlas   4912973 Dec  2 11:06 log.47531058._000462.job.log.1
[2025-12-02 11:06:07] -rw------- 1 boincer umatlas       353 Dec  2 11:06 output.list
[2025-12-02 11:06:07] -rw-r--r-- 1 boincer umatlas       620 Dec  2 11:06 runtime_log
[2025-12-02 11:06:07] -rw------- 1 boincer umatlas   6922240 Dec  2 11:06 result.tar.gz
[2025-12-02 11:06:07] -rw-r--r-- 1 boincer umatlas      9428 Dec  2 11:06 runtime_log.err
[2025-12-02 11:06:07] -rw------- 1 boincer umatlas       793 Dec  2 11:06 Hi7KDmVtAj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgDLKDmXdf04m.diag
[2025-12-02 11:06:07] -rw-r--r-- 1 boincer umatlas     23471 Dec  2 11:06 stderr.txt
[2025-12-02 11:06:07] HITS file was successfully produced:
[2025-12-02 11:06:07] -rw------- 1 boincer umatlas 709878418 Dec  2 11:04 shared/HITS.pool.root.1
[2025-12-02 11:06:07]  *** Contents of shared directory: ***
[2025-12-02 11:06:07] total 1068200
[2025-12-02 11:06:07] -rw-r--r-- 3 boincer umatlas 376416094 Dec  2 00:43 ATLAS.root_0
[2025-12-02 11:06:07] -rw-r--r-- 2 boincer umatlas     15847 Dec  2 00:43 start_atlas.sh
[2025-12-02 11:06:07] -rw-r--r-- 2 boincer umatlas    590117 Dec  2 00:43 input.tar.gz
[2025-12-02 11:06:07] -rw------- 1 boincer umatlas 709878418 Dec  2 11:04 HITS.pool.root.1
[2025-12-02 11:06:07] -rw------- 1 boincer umatlas   6922240 Dec  2 11:06 result.tar.gz
11:06:08 (19616): run_atlas exited; CPU time 272789.543284
11:06:08 (19616): called boinc_finish(0)

</stderr_txt>
]]>

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