Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:35:32 (846332): wrapper (7.7.26015): starting
00:35:32 (846332): wrapper: running run_atlas (--nthreads 11)
[2025-12-02 00:35:33] Arguments: --nthreads 11
[2025-12-02 00:35:33] Threads: 11
[2025-12-02 00:35:33] Checking for CVMFS
[2025-12-02 00:35:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 00:35:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 00:35:35] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 00:35:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 00:35:37] 2.13.2.0 9388 42072 168572 153545 1 96 28565519 39288833 7883 16776704 0 34783157 99.674 32423107 41359 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 00:35:37] CVMFS is ok
[2025-12-02 00:35:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 00:35:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 00:35:37] Further information can be found at the LHC@home message board.
[2025-12-02 00:35:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 00:35:37] Checking for apptainer binary...
[2025-12-02 00:35:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 00:35:37] Running /usr/bin/apptainer --version
[2025-12-02 00:35:37] apptainer version 1.4.4-1.el9
[2025-12-02 00:35:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 00:35:38] c-210-25.aglt2.org
[2025-12-02 00:35:38] apptainer works
[2025-12-02 00:35:38] Set ATHENA_PROC_NUMBER=11
[2025-12-02 00:35:38] Set ATHENA_CORE_NUMBER=11
[2025-12-02 00:35:39] Starting ATLAS job with PandaID=6901110008
[2025-12-02 00:35:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 19:09:48]  *** The last 200 lines of the pilot log: ***
[2025-12-02 19:09:48] 2025-12-03 00:09:03,406 | INFO     | job 6901110008 has finished - writing final server update
[2025-12-02 19:09:48] 2025-12-03 00:09:03,406 | INFO     | total number of processed events: 1000 (read)
[2025-12-02 19:09:48] 2025-12-03 00:09:03,407 | INFO     | executing command: lscpu
[2025-12-02 19:09:48] 2025-12-03 00:09:03,451 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-02 19:09:48] 2025-12-03 00:09:03,606 | INFO     | time since job start (66681s) is within the limit (172800.0s)
[2025-12-02 19:09:48] 2025-12-03 00:09:04,995 | INFO     | monitor loop #4324: job 0:6901110008 is in state 'finished'
[2025-12-02 19:09:48] 2025-12-03 00:09:04,996 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 19:09:48] 2025-12-03 00:09:05,616 | INFO     | time since job start (66683s) is within the limit (172800.0s)
[2025-12-02 19:09:48] 2025-12-03 00:09:07,099 | INFO     | PID=853503 has CPU usage=13.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 19:09:48] 2025-12-03 00:09:07,099 | INFO     | .. there are 8 such processes running
[2025-12-02 19:09:48] 2025-12-03 00:09:07,546 | INFO     | monitor loop #4325: job 0:6901110008 is in state 'finished'
[2025-12-02 19:09:48] 2025-12-03 00:09:07,546 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 19:09:48] 2025-12-03 00:09:08,101 | INFO     | time since job start (66686s) is within the limit (172800.0s)
[2025-12-02 19:09:48] 2025-12-03 00:09:09,942 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 19:09:48] 2025-12-03 00:09:09,948 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1734500000007
[2025-12-02 19:09:48] 2025-12-03 00:09:09,955 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6901110008/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 19:09:48] 2025-12-03 00:09:09,955 | INFO     | extracted standard info from prmon json
[2025-12-02 19:09:48] 2025-12-03 00:09:09,956 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 19:09:48] 2025-12-03 00:09:09,956 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 19:09:48] 2025-12-03 00:09:09,977 | INFO     | fitting pss+swap vs Time
[2025-12-02 19:09:48] 2025-12-03 00:09:09,979 | INFO     | sum of square deviations: 400481205692.0681
[2025-12-02 19:09:48] 2025-12-03 00:09:10,014 | INFO     | sum of deviations: 6673286319465.082
[2025-12-02 19:09:48] 2025-12-03 00:09:10,015 | INFO     | mean x: 1764687347.6822772
[2025-12-02 19:09:48] 2025-12-03 00:09:10,015 | INFO     | mean y: 3843846.112947658
[2025-12-02 19:09:48] 2025-12-03 00:09:10,015 | INFO     | intersect: -29401441016.3085
[2025-12-02 19:09:48] 2025-12-03 00:09:10,016 | INFO     | chi2: 27.516959271617864
[2025-12-02 19:09:48] 2025-12-03 00:09:10,018 | INFO     | sum of square deviations: 394993362883.4194
[2025-12-02 19:09:48] 2025-12-03 00:09:10,090 | INFO     | monitor loop #4326: job 0:6901110008 is in state 'finished'
[2025-12-02 19:09:48] 2025-12-03 00:09:10,090 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 19:09:48] 2025-12-03 00:09:10,135 | INFO     | time since job start (66688s) is within the limit (172800.0s)
[2025-12-02 19:09:48] 2025-12-03 00:09:10,161 | INFO     | sum of deviations: 7205422619603.256
[2025-12-02 19:09:48] 2025-12-03 00:09:10,162 | INFO     | mean x: 1764687195.2223246
[2025-12-02 19:09:48] 2025-12-03 00:09:10,162 | INFO     | mean y: 3858628.716789668
[2025-12-02 19:09:48] 2025-12-03 00:09:10,162 | INFO     | intersect: -32187358307.58408
[2025-12-02 19:09:48] 2025-12-03 00:09:10,163 | INFO     | chi2: 23.897901054883445
[2025-12-02 19:09:48] 2025-12-03 00:09:10,163 | INFO     | current chi2=23.897901054883445 (change=13.152100786322226 %)
[2025-12-02 19:09:48] 2025-12-03 00:09:10,167 | INFO     | right removable region: 1083
[2025-12-02 19:09:48] 2025-12-03 00:09:10,169 | INFO     | sum of square deviations: 394987595333.4201
[2025-12-02 19:09:48] 2025-12-03 00:09:10,216 | INFO     | sum of deviations: 6047137548877.95
[2025-12-02 19:09:48] 2025-12-03 00:09:10,216 | INFO     | mean x: 1764687500.2223246
[2025-12-02 19:09:48] 2025-12-03 00:09:10,216 | INFO     | mean y: 3861231.4068265683
[2025-12-02 19:09:48] 2025-12-03 00:09:10,217 | INFO     | intersect: -27012956943.913425
[2025-12-02 19:09:48] 2025-12-03 00:09:10,218 | INFO     | chi2: 22.364554504175526
[2025-12-02 19:09:48] 2025-12-03 00:09:10,218 | INFO     | current chi2=22.364554504175526 (change=18.72446994082207 %)
[2025-12-02 19:09:48] 2025-12-03 00:09:10,218 | INFO     | left removable region: 10
[2025-12-02 19:09:48] 2025-12-03 00:09:10,220 | INFO     | sum of square deviations: 383085788612.59393
[2025-12-02 19:09:48] 2025-12-03 00:09:10,257 | INFO     | sum of deviations: 6134428746140.486
[2025-12-02 19:09:48] 2025-12-03 00:09:10,258 | INFO     | mean x: 1764687469.8108108
[2025-12-02 19:09:48] 2025-12-03 00:09:10,258 | INFO     | mean y: 3895266.5442684065
[2025-12-02 19:09:48] 2025-12-03 00:09:10,258 | INFO     | intersect: -28254395342.37412
[2025-12-02 19:09:48] 2025-12-03 00:09:10,259 | INFO     | chi2: 13.902944503084083
[2025-12-02 19:09:48] 2025-12-03 00:09:10,296 | INFO     | current memory leak: 16.01 B/s (using 1073 data points, chi2=13.90)
[2025-12-02 19:09:48] 2025-12-03 00:09:10,297 | INFO     | could have reported an average CPU frequency of 2600 MHz (40 samples)
[2025-12-02 19:09:48] 2025-12-03 00:09:10,297 | INFO     | ..............................
[2025-12-02 19:09:48] 2025-12-03 00:09:10,298 | INFO     | . Timing measurements:
[2025-12-02 19:09:48] 2025-12-03 00:09:10,298 | INFO     | . get job = 0 s
[2025-12-02 19:09:48] 2025-12-03 00:09:10,298 | INFO     | . initial setup = 11 s
[2025-12-02 19:09:48] 2025-12-03 00:09:10,298 | INFO     | . payload setup = 135 s
[2025-12-02 19:09:48] 2025-12-03 00:09:10,298 | INFO     | . stage-in = 0 s
[2025-12-02 19:09:48] 2025-12-03 00:09:10,298 | INFO     | . payload execution = 66424 s
[2025-12-02 19:09:48] 2025-12-03 00:09:10,298 | INFO     | . stage-out = 3 s
[2025-12-02 19:09:48] 2025-12-03 00:09:10,298 | INFO     | . log creation = 0 s
[2025-12-02 19:09:48] 2025-12-03 00:09:10,298 | INFO     | ..............................
[2025-12-02 19:09:48] 2025-12-03 00:09:10,461 | INFO     | 
[2025-12-02 19:09:48] 2025-12-03 00:09:10,461 | INFO     | job summary report
[2025-12-02 19:09:48] 2025-12-03 00:09:10,461 | INFO     | --------------------------------------------------
[2025-12-02 19:09:48] 2025-12-03 00:09:10,461 | INFO     | PanDA job id: 6901110008
[2025-12-02 19:09:48] 2025-12-03 00:09:10,461 | INFO     | task id: 47531058
[2025-12-02 19:09:48] 2025-12-03 00:09:10,461 | INFO     | errors: (none)
[2025-12-02 19:09:48] 2025-12-03 00:09:10,461 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 19:09:48] 2025-12-03 00:09:10,462 | INFO     | pilot state: finished 
[2025-12-02 19:09:48] 2025-12-03 00:09:10,462 | INFO     | transexitcode: 0
[2025-12-02 19:09:48] 2025-12-03 00:09:10,462 | INFO     | exeerrorcode: 0
[2025-12-02 19:09:48] 2025-12-03 00:09:10,462 | INFO     | exeerrordiag: 
[2025-12-02 19:09:48] 2025-12-03 00:09:10,462 | INFO     | exitcode: 0
[2025-12-02 19:09:48] 2025-12-03 00:09:10,462 | INFO     | exitmsg: OK
[2025-12-02 19:09:48] 2025-12-03 00:09:10,462 | INFO     | cpuconsumptiontime: 255556 s
[2025-12-02 19:09:48] 2025-12-03 00:09:10,462 | INFO     | nevents: 1000
[2025-12-02 19:09:48] 2025-12-03 00:09:10,462 | INFO     | neventsw: 0
[2025-12-02 19:09:48] 2025-12-03 00:09:10,462 | INFO     | pid: 864560
[2025-12-02 19:09:48] 2025-12-03 00:09:10,463 | INFO     | pgrp: 864560
[2025-12-02 19:09:48] 2025-12-03 00:09:10,463 | INFO     | corecount: 11
[2025-12-02 19:09:48] 2025-12-03 00:09:10,463 | INFO     | event service: False
[2025-12-02 19:09:48] 2025-12-03 00:09:10,463 | INFO     | sizes: {0: 2284227, 1: 2284283, 2: 2284510, 3: 2284510, 14: 2284538, 25: 2284566, 36: 2284722, 48: 2284750, 57: 2285040, 60: 2285068, 66564: 2360533, 66567: 236952
[2025-12-02 19:09:48] 2025-12-03 00:09:10,463 | INFO     | --------------------------------------------------
[2025-12-02 19:09:48] 2025-12-03 00:09:10,463 | INFO     | 
[2025-12-02 19:09:48] 2025-12-03 00:09:10,463 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-02 19:09:48] 2025-12-03 00:09:10,487 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 19:09:48] 2025-12-03 00:09:10,488 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 19:09:48] 2025-12-03 00:09:10,488 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 19:09:48] 2025-12-03 00:09:10,488 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 19:09:48] 2025-12-03 00:09:10,488 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 19:09:48] 2025-12-03 00:09:10,488 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 19:09:48] 2025-12-03 00:09:10,488 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 19:09:48] 2025-12-03 00:09:10,488 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 19:09:48] 2025-12-03 00:09:10,489 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 19:09:48] 2025-12-03 00:09:10,489 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 19:09:48] 2025-12-03 00:09:10,489 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 19:09:48] 2025-12-03 00:09:10,489 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 19:09:48] 2025-12-03 00:09:10,489 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 19:09:48] 2025-12-03 00:09:10,489 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 19:09:48] 2025-12-03 00:09:10,489 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 19:09:48] 2025-12-03 00:09:10,489 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 19:09:48] 2025-12-03 00:09:10,489 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 19:09:48] 2025-12-03 00:09:10,489 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 19:09:48] 2025-12-03 00:09:10,490 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 19:09:48] 2025-12-03 00:09:10,490 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 19:09:48] 2025-12-03 00:09:10,490 | INFO     | job 6901110008 has completed (purged errors)
[2025-12-02 19:09:48] 2025-12-03 00:09:10,490 | INFO     | overall cleanup function is called
[2025-12-02 19:09:48] 2025-12-03 00:09:11,510 | INFO     | --- collectZombieJob: --- 10, [864560]
[2025-12-02 19:09:48] 2025-12-03 00:09:11,510 | INFO     | zombie collector waiting for pid 864560
[2025-12-02 19:09:48] 2025-12-03 00:09:11,510 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 19:09:48] 2025-12-03 00:09:11,510 | INFO     | collected zombie processes
[2025-12-02 19:09:48] 2025-12-03 00:09:11,510 | INFO     | will attempt to kill all subprocesses of pid=864560
[2025-12-02 19:09:48] 2025-12-03 00:09:11,918 | INFO     | process IDs to be killed: [864560] (in reverse order)
[2025-12-02 19:09:48] 2025-12-03 00:09:12,018 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 19:09:48] 2025-12-03 00:09:12,018 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 19:09:48] 2025-12-03 00:09:12,024 | INFO     | did not find any defunct processes belonging to 864560
[2025-12-02 19:09:48] 2025-12-03 00:09:12,029 | INFO     | did not find any defunct processes belonging to 864560
[2025-12-02 19:09:48] 2025-12-03 00:09:12,035 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 19:09:48] 2025-12-03 00:09:12,036 | INFO     | ready for new job
[2025-12-02 19:09:48] 2025-12-03 00:09:12,036 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 19:09:48] 2025-12-03 00:09:12,045 | INFO     | ***************************************
[2025-12-02 19:09:48] 2025-12-03 00:09:12,046 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 19:09:48] 2025-12-03 00:09:12,046 | INFO     | ***************************************
[2025-12-02 19:09:48] 2025-12-03 00:09:12,046 | INFO     | 
[2025-12-02 19:09:48] 2025-12-03 00:09:12,048 | INFO     | architecture information:
[2025-12-02 19:09:48] 2025-12-03 00:09:12,060 | INFO     | executing command: cat /etc/os-release
[2025-12-02 19:09:48] 2025-12-03 00:09:12,085 | INFO     | cat /etc/os-release:
[2025-12-02 19:09:48] NAME="CentOS Linux"
[2025-12-02 19:09:48] VERSION="7 (Core)"
[2025-12-02 19:09:48] ID="centos"
[2025-12-02 19:09:48] ID_LIKE="rhel fedora"
[2025-12-02 19:09:48] VERSION_ID="7"
[2025-12-02 19:09:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 19:09:48] ANSI_COLOR="0;31"
[2025-12-02 19:09:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 19:09:48] HOME_URL="https://www.centos.org/"
[2025-12-02 19:09:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 19:09:48] 
[2025-12-02 19:09:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 19:09:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 19:09:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 19:09:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 19:09:48] 
[2025-12-02 19:09:48] 2025-12-03 00:09:12,086 | INFO     | ***************************************
[2025-12-02 19:09:48] 2025-12-03 00:09:12,588 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-02 19:09:48] 2025-12-03 00:09:12,607 | INFO     | sufficient remaining disk space (50585403392 B)
[2025-12-02 19:09:48] 2025-12-03 00:09:12,609 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 19:09:48] 2025-12-03 00:09:12,609 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 19:09:48] 2025-12-03 00:09:12,610 | INFO     | update_server=False
[2025-12-02 19:09:48] 2025-12-03 00:09:12,610 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 19:09:48] 2025-12-03 00:09:12,610 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 19:09:48] 2025-12-03 00:09:12,648 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 19:09:48] 2025-12-03 00:09:13,103 | INFO     | all job control threads have been joined
[2025-12-02 19:09:48] 2025-12-03 00:09:13,216 | INFO     | all payload control threads have been joined
[2025-12-02 19:09:48] 2025-12-03 00:09:13,600 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 19:09:48] 2025-12-03 00:09:13,600 | INFO     | aborting loop
[2025-12-02 19:09:48] 2025-12-03 00:09:13,615 | INFO     | [job] retrieve thread has finished
[2025-12-02 19:09:48] 2025-12-03 00:09:13,626 | INFO     | [payload] failed_post thread has finished
[2025-12-02 19:09:48] 2025-12-03 00:09:13,708 | INFO     | all data control threads have been joined
[2025-12-02 19:09:48] 2025-12-03 00:09:13,812 | INFO     | [payload] validate_post thread has finished
[2025-12-02 19:09:48] 2025-12-03 00:09:14,016 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 19:09:48] 2025-12-03 00:09:14,109 | INFO     | [job] control thread has finished
[2025-12-02 19:09:48] 2025-12-03 00:09:14,177 | INFO     | [data] copytool_in thread has finished
[2025-12-02 19:09:48] 2025-12-03 00:09:14,215 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 19:09:48] 2025-12-03 00:09:14,222 | INFO     | [payload] control thread has finished
[2025-12-02 19:09:48] 2025-12-03 00:09:14,269 | INFO     | [job] validate thread has finished
[2025-12-02 19:09:48] 2025-12-03 00:09:14,375 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 19:09:48] 2025-12-03 00:09:14,605 | INFO     | [job] job monitor thread has finished
[2025-12-02 19:09:48] 2025-12-03 00:09:14,616 | INFO     | [data] copytool_out thread has finished
[2025-12-02 19:09:48] 2025-12-03 00:09:14,714 | INFO     | [data] control thread has finished
[2025-12-02 19:09:48] 2025-12-03 00:09:15,476 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 19:09:48] 2025-12-03 00:09:16,482 | INFO     | [job] queue monitor thread has finished
[2025-12-02 19:09:48] 2025-12-03 00:09:16,658 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 19:09:48] 2025-12-03 00:09:23,314 | INFO     | job.realtimelogging is not enabled
[2025-12-02 19:09:48] 2025-12-03 00:09:24,319 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 19:09:48] 2025-12-03 00:09:41,438 | INFO     | [monitor] cgroup control has ended
[2025-12-02 19:09:48] 2025-12-03 00:09:42,446 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140396697331520)>', '<ExcThread(monitor, started 140395904235264)>']
[2025-12-02 19:09:48] 2025-12-03 00:09:43,574 | INFO     | PID=853503 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 19:09:48] 2025-12-03 00:09:43,575 | INFO     | .. there are 8 such processes running
[2025-12-02 19:09:48] 2025-12-03 00:09:43,575 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 19:09:48] 2025-12-03 00:09:43,575 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 19:09:48] 2025-12-03 00:09:43,576 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 19:09:48] 2025-12-03 00:09:43,576 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 19:09:48] 2025-12-03 00:09:43,576 | INFO     | [monitor] control thread has ended
[2025-12-02 19:09:48] 2025-12-03 00:09:47,473 | INFO     | all workflow threads have been joined
[2025-12-02 19:09:48] 2025-12-03 00:09:47,473 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 19:09:48] 2025-12-03 00:09:47,473 | INFO     | traces error code: 0
[2025-12-02 19:09:48] 2025-12-03 00:09:47,473 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 19:09:48] 2025-12-03 00:09:47,787 [wrapper] ==== pilot stdout END ====
[2025-12-02 19:09:48] 2025-12-03 00:09:47,834 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 19:09:48] 2025-12-03 00:09:47,851 [wrapper] pilotpid: 853503
[2025-12-02 19:09:48] 2025-12-03 00:09:47,882 [wrapper] Pilot exit status: 0
[2025-12-02 19:09:48] 2025-12-03 00:09:47,918 [wrapper] pandaids: 6901110008
[2025-12-02 19:09:48] 2025-12-03 00:09:47,977 [wrapper] cleanup supervisor_pilot 2447504 853504
[2025-12-02 19:09:48] 2025-12-03 00:09:47,981 [wrapper] Test setup, not cleaning
[2025-12-02 19:09:48] 2025-12-03 00:09:47,984 [wrapper] apfmon messages muted
[2025-12-02 19:09:48] 2025-12-03 00:09:47,987 [wrapper] ==== wrapper stdout END ====
[2025-12-02 19:09:48] 2025-12-03 00:09:47,990 [wrapper] ==== wrapper stderr END ====
[2025-12-02 19:09:48]  *** Error codes and diagnostics ***
[2025-12-02 19:09:48]     "exeErrorCode": 0,
[2025-12-02 19:09:48]     "exeErrorDiag": "",
[2025-12-02 19:09:48]     "pilotErrorCode": 0,
[2025-12-02 19:09:48]     "pilotErrorDiag": "",
[2025-12-02 19:09:48]  *** Listing of results directory ***
[2025-12-02 19:09:48] total 1085776
[2025-12-02 19:09:48] -rw-r--r--. 1 boincer umatlas    576529 Nov 29 04:19 pilot3.tar.gz
[2025-12-02 19:09:48] -rwx------. 1 boincer umatlas     36292 Nov 29 04:19 runpilot2-wrapper.sh
[2025-12-02 19:09:48] -rw-r--r--. 1 boincer umatlas      5112 Nov 29 04:20 queuedata.json
[2025-12-02 19:09:48] -rw-r--r--. 1 boincer umatlas       100 Dec  2 00:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 19:09:48] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 00:35 run_atlas
[2025-12-02 19:09:48] -rw-r--r--. 1 boincer umatlas       105 Dec  2 00:35 job.xml
[2025-12-02 19:09:48] -rw-r--r--. 2 boincer umatlas 377740136 Dec  2 00:35 EVNT.47531050._000547.pool.root.1
[2025-12-02 19:09:48] -rw-r--r--. 2 boincer umatlas    590124 Dec  2 00:35 input.tar.gz
[2025-12-02 19:09:48] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 00:35 start_atlas.sh
[2025-12-02 19:09:48] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 00:35 shared
[2025-12-02 19:09:48] -rw-r--r--. 1 boincer umatlas         0 Dec  2 00:35 boinc_lockfile
[2025-12-02 19:09:48] -rw-r--r--. 1 boincer umatlas      2881 Dec  2 00:35 pandaJob.out
[2025-12-02 19:09:48] -rw-------. 1 boincer umatlas        57 Dec  2 00:35 setup.sh.local
[2025-12-02 19:09:48] -rw-------. 1 boincer umatlas    992001 Dec  2 00:37 agis_schedconf.cvmfs.json
[2025-12-02 19:09:48] drwx------. 5 boincer umatlas      4096 Dec  2 00:37 pilot3
[2025-12-02 19:09:48] -rw-r--r--. 1 boincer umatlas       533 Dec  2 18:53 boinc_task_state.xml
[2025-12-02 19:09:48] -rw-r--r--. 1 boincer umatlas      6662 Dec  2 19:00 init_data.xml
[2025-12-02 19:09:48] -rw-------. 1 boincer umatlas 707109254 Dec  2 19:08 HITS.47531058._001625.pool.root.1
[2025-12-02 19:09:48] -rw-------. 1 boincer umatlas      1059 Dec  2 19:08 memory_monitor_summary.json
[2025-12-02 19:09:48] -rw-------. 1 boincer umatlas   1516240 Dec  2 19:08 agis_ddmendpoints.agis.ALL.json
[2025-12-02 19:09:48] -rw-------. 1 boincer umatlas   2685190 Dec  2 19:08 log.47531058._001625.job.log.tgz.1
[2025-12-02 19:09:48] -rw-------. 1 boincer umatlas     27676 Dec  2 19:09 heartbeat.json
[2025-12-02 19:09:48] -rw-------. 1 boincer umatlas        95 Dec  2 19:09 pilot_heartbeat.json
[2025-12-02 19:09:48] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 19:09 boinc_mmap_file
[2025-12-02 19:09:48] -rw-------. 1 boincer umatlas      4894 Dec  2 19:09 pilotlog.txt
[2025-12-02 19:09:48] -rw-r--r--. 1 boincer umatlas        29 Dec  2 19:09 wrapper_checkpoint.txt
[2025-12-02 19:09:48] -rw-------. 1 boincer umatlas   8830471 Dec  2 19:09 log.47531058._001625.job.log.1
[2025-12-02 19:09:48] -rw-------. 1 boincer umatlas       353 Dec  2 19:09 output.list
[2025-12-02 19:09:48] -rw-r--r--. 1 boincer umatlas       620 Dec  2 19:09 runtime_log
[2025-12-02 19:09:48] -rw-------. 1 boincer umatlas  11550720 Dec  2 19:09 result.tar.gz
[2025-12-02 19:09:48] -rw-r--r--. 1 boincer umatlas      9345 Dec  2 19:09 runtime_log.err
[2025-12-02 19:09:48] -rw-------. 1 boincer umatlas       661 Dec  2 19:09 GNLMDmyHWj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEiLKDmcZ4Dbm.diag
[2025-12-02 19:09:48] -rw-r--r--. 1 boincer umatlas     21874 Dec  2 19:09 stderr.txt
[2025-12-02 19:09:48] HITS file was successfully produced:
[2025-12-02 19:09:48] -rw-------. 1 boincer umatlas 707109254 Dec  2 19:08 shared/HITS.pool.root.1
[2025-12-02 19:09:48]  *** Contents of shared directory: ***
[2025-12-02 19:09:48] total 1071312
[2025-12-02 19:09:48] -rw-r--r--. 2 boincer umatlas 377740136 Dec  2 00:35 ATLAS.root_0
[2025-12-02 19:09:48] -rw-r--r--. 2 boincer umatlas    590124 Dec  2 00:35 input.tar.gz
[2025-12-02 19:09:48] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 00:35 start_atlas.sh
[2025-12-02 19:09:48] -rw-------. 1 boincer umatlas 707109254 Dec  2 19:08 HITS.pool.root.1
[2025-12-02 19:09:48] -rw-------. 1 boincer umatlas  11550720 Dec  2 19:09 result.tar.gz
19:09:49 (846332): run_atlas exited; CPU time 255775.463616
19:09:49 (846332): called boinc_finish(0)

</stderr_txt>
]]>

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