Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:27 (3647250): wrapper (7.7.26015): starting
00:02:27 (3647250): wrapper: running run_atlas (--nthreads 12)
[2025-12-02 00:02:27] Arguments: --nthreads 12
[2025-12-02 00:02:27] Threads: 12
[2025-12-02 00:02:27] Checking for CVMFS
[2025-12-02 00:02:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 00:02:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 00:02:28] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 00:02:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 00:02:29] 2.13.2.0 7301 44750 326520 153544 1 89 29387399 40960000 18905 16776704 0 278448338 99.666 255449860 36067 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 00:02:29] CVMFS is ok
[2025-12-02 00:02:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 00:02:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 00:02:29] Further information can be found at the LHC@home message board.
[2025-12-02 00:02:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 00:02:29] Checking for apptainer binary...
[2025-12-02 00:02:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 00:02:29] Running /usr/bin/apptainer --version
[2025-12-02 00:02:29] apptainer version 1.4.4-1.el9
[2025-12-02 00:02:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 00:02:30] c-212-17.aglt2.org
[2025-12-02 00:02:30] apptainer works
[2025-12-02 00:02:30] Set ATHENA_PROC_NUMBER=12
[2025-12-02 00:02:30] Set ATHENA_CORE_NUMBER=12
[2025-12-02 00:02:30] Starting ATLAS job with PandaID=6895348451
[2025-12-02 00:02:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 02:55:49]  *** The last 200 lines of the pilot log: ***
[2025-12-03 02:55:49] 2025-12-03 07:54:43,901 | INFO     | time since job start (96649s) is within the limit (172800.0s)
[2025-12-03 02:55:49] 2025-12-03 07:54:44,060 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 02:55:49] 2025-12-03 07:54:44,073 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3108.916541666666
[2025-12-03 02:55:49] 2025-12-03 07:54:44,087 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6895348451/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 02:55:49] 2025-12-03 07:54:44,088 | INFO     | extracted standard info from prmon json
[2025-12-03 02:55:49] 2025-12-03 07:54:44,088 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 02:55:49] 2025-12-03 07:54:44,088 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 02:55:49] 2025-12-03 07:54:44,107 | INFO     | fitting pss+swap vs Time
[2025-12-03 02:55:49] 2025-12-03 07:54:44,109 | INFO     | sum of square deviations: 1227589557172.7942
[2025-12-03 02:55:49] 2025-12-03 07:54:44,190 | INFO     | sum of deviations: 11518350674470.803
[2025-12-03 02:55:49] 2025-12-03 07:54:44,190 | INFO     | mean x: 1764700216.1491783
[2025-12-03 02:55:49] 2025-12-03 07:54:44,190 | INFO     | mean y: 3422934.6194690266
[2025-12-03 02:55:49] 2025-12-03 07:54:44,190 | INFO     | intersect: -16554583612.563574
[2025-12-03 02:55:49] 2025-12-03 07:54:44,192 | INFO     | chi2: 7.34426577705988
[2025-12-03 02:55:49] 2025-12-03 07:54:44,193 | INFO     | sum of square deviations: 1215986794565.0903
[2025-12-03 02:55:49] 2025-12-03 07:54:44,236 | INFO     | sum of deviations: 12155698855450.66
[2025-12-03 02:55:49] 2025-12-03 07:54:44,237 | INFO     | mean x: 1764700063.6575778
[2025-12-03 02:55:49] 2025-12-03 07:54:44,237 | INFO     | mean y: 3431309.0456563095
[2025-12-03 02:55:49] 2025-12-03 07:54:44,237 | INFO     | intersect: -17637518938.023716
[2025-12-03 02:55:49] 2025-12-03 07:54:44,238 | INFO     | chi2: 4.000037808473406
[2025-12-03 02:55:49] 2025-12-03 07:54:44,238 | INFO     | current chi2=4.000037808473406 (change=45.53522530505784 %)
[2025-12-03 02:55:49] 2025-12-03 07:54:44,239 | INFO     | sum of square deviations: 1204457190150.328
[2025-12-03 02:55:49] 2025-12-03 07:54:44,259 | INFO     | monitor loop #6116: job 0:6895348451 is in state 'finished'
[2025-12-03 02:55:49] 2025-12-03 07:54:44,265 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:55:49] 2025-12-03 07:54:44,339 | INFO     | sum of deviations: 12322247049101.38
[2025-12-03 02:55:49] 2025-12-03 07:54:44,340 | INFO     | mean x: 1764699911.1647582
[2025-12-03 02:55:49] 2025-12-03 07:54:44,340 | INFO     | mean y: 3433508.0718829515
[2025-12-03 02:55:49] 2025-12-03 07:54:44,340 | INFO     | intersect: -18050398915.964222
[2025-12-03 02:55:49] 2025-12-03 07:54:44,341 | INFO     | chi2: 3.3859009718966018
[2025-12-03 02:55:49] 2025-12-03 07:54:44,341 | INFO     | current chi2=3.3859009718966018 (change=15.353275793440229 %)
[2025-12-03 02:55:49] 2025-12-03 07:54:44,341 | INFO     | right removable region: 1571
[2025-12-03 02:55:49] 2025-12-03 07:54:44,342 | INFO     | sum of square deviations: 1215984238055.091
[2025-12-03 02:55:49] 2025-12-03 07:54:44,388 | INFO     | sum of deviations: 10893476424982.475
[2025-12-03 02:55:49] 2025-12-03 07:54:44,388 | INFO     | mean x: 1764700368.6575778
[2025-12-03 02:55:49] 2025-12-03 07:54:44,388 | INFO     | mean y: 3431143.311984781
[2025-12-03 02:55:49] 2025-12-03 07:54:44,388 | INFO     | intersect: -15805755572.69071
[2025-12-03 02:55:49] 2025-12-03 07:54:44,390 | INFO     | chi2: 4.617664333431483
[2025-12-03 02:55:49] 2025-12-03 07:54:44,390 | INFO     | current chi2=4.617664333431483 (change=37.12558241213234 %)
[2025-12-03 02:55:49] 2025-12-03 07:54:44,391 | INFO     | sum of square deviations: 1204453712503.5034
[2025-12-03 02:55:49] 2025-12-03 07:54:44,436 | INFO     | sum of deviations: 10699967093041.844
[2025-12-03 02:55:49] 2025-12-03 07:54:44,437 | INFO     | mean x: 1764700521.1564887
[2025-12-03 02:55:49] 2025-12-03 07:54:44,437 | INFO     | mean y: 3433702.5006361324
[2025-12-03 02:55:49] 2025-12-03 07:54:44,437 | INFO     | intersect: -15673580124.955433
[2025-12-03 02:55:49] 2025-12-03 07:54:44,438 | INFO     | chi2: 4.546813333656643
[2025-12-03 02:55:49] 2025-12-03 07:54:44,438 | INFO     | current chi2=4.546813333656643 (change=1.5343471213765991 %)
[2025-12-03 02:55:49] 2025-12-03 07:54:44,438 | INFO     | left removable region: 20
[2025-12-03 02:55:49] 2025-12-03 07:54:44,439 | INFO     | sum of square deviations: 1156823658801.3235
[2025-12-03 02:55:49] 2025-12-03 07:54:44,484 | INFO     | sum of deviations: 11099188049728.639
[2025-12-03 02:55:49] 2025-12-03 07:54:44,484 | INFO     | mean x: 1764700490.6692457
[2025-12-03 02:55:49] 2025-12-03 07:54:44,484 | INFO     | mean y: 3449400.837524178
[2025-12-03 02:55:49] 2025-12-03 07:54:44,485 | INFO     | intersect: -16928035746.762007
[2025-12-03 02:55:49] 2025-12-03 07:54:44,486 | INFO     | chi2: 0.4324573531737585
[2025-12-03 02:55:49] 2025-12-03 07:54:44,486 | INFO     | current memory leak: 9.59 B/s (using 1551 data points, chi2=0.43)
[2025-12-03 02:55:49] 2025-12-03 07:54:44,488 | INFO     | could have reported an average CPU frequency of 3151 MHz (56 samples)
[2025-12-03 02:55:49] 2025-12-03 07:54:44,488 | INFO     | ..............................
[2025-12-03 02:55:49] 2025-12-03 07:54:44,488 | INFO     | . Timing measurements:
[2025-12-03 02:55:49] 2025-12-03 07:54:44,488 | INFO     | . get job = 0 s
[2025-12-03 02:55:49] 2025-12-03 07:54:44,488 | INFO     | . initial setup = 6 s
[2025-12-03 02:55:49] 2025-12-03 07:54:44,488 | INFO     | . payload setup = 42 s
[2025-12-03 02:55:49] 2025-12-03 07:54:44,488 | INFO     | . stage-in = 0 s
[2025-12-03 02:55:49] 2025-12-03 07:54:44,488 | INFO     | . payload execution = 96507 s
[2025-12-03 02:55:49] 2025-12-03 07:54:44,488 | INFO     | . stage-out = 4 s
[2025-12-03 02:55:49] 2025-12-03 07:54:44,488 | INFO     | . log creation = 1 s
[2025-12-03 02:55:49] 2025-12-03 07:54:44,488 | INFO     | ..............................
[2025-12-03 02:55:49] 2025-12-03 07:54:45,000 | INFO     | 
[2025-12-03 02:55:49] 2025-12-03 07:54:45,001 | INFO     | job summary report
[2025-12-03 02:55:49] 2025-12-03 07:54:45,001 | INFO     | --------------------------------------------------
[2025-12-03 02:55:49] 2025-12-03 07:54:45,001 | INFO     | PanDA job id: 6895348451
[2025-12-03 02:55:49] 2025-12-03 07:54:45,001 | INFO     | task id: 47556137
[2025-12-03 02:55:49] 2025-12-03 07:54:45,001 | INFO     | errors: (none)
[2025-12-03 02:55:49] 2025-12-03 07:54:45,002 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 02:55:49] 2025-12-03 07:54:45,002 | INFO     | pilot state: finished 
[2025-12-03 02:55:49] 2025-12-03 07:54:45,002 | INFO     | transexitcode: 0
[2025-12-03 02:55:49] 2025-12-03 07:54:45,002 | INFO     | exeerrorcode: 0
[2025-12-03 02:55:49] 2025-12-03 07:54:45,002 | INFO     | exeerrordiag: 
[2025-12-03 02:55:49] 2025-12-03 07:54:45,002 | INFO     | exitcode: 0
[2025-12-03 02:55:49] 2025-12-03 07:54:45,002 | INFO     | exitmsg: OK
[2025-12-03 02:55:49] 2025-12-03 07:54:45,002 | INFO     | cpuconsumptiontime: 207505 s
[2025-12-03 02:55:49] 2025-12-03 07:54:45,002 | INFO     | nevents: 1000
[2025-12-03 02:55:49] 2025-12-03 07:54:45,002 | INFO     | neventsw: 0
[2025-12-03 02:55:49] 2025-12-03 07:54:45,002 | INFO     | pid: 3682992
[2025-12-03 02:55:49] 2025-12-03 07:54:45,002 | INFO     | pgrp: 3682992
[2025-12-03 02:55:49] 2025-12-03 07:54:45,002 | INFO     | corecount: 12
[2025-12-03 02:55:49] 2025-12-03 07:54:45,002 | INFO     | event service: False
[2025-12-03 02:55:49] 2025-12-03 07:54:45,002 | INFO     | sizes: {0: 2284037, 1: 2284093, 2: 2284320, 3: 2284348, 15: 2284348, 26: 2284376, 37: 2284532, 38: 2284822, 48: 2284850, 96554: 2355300, 96559: 2364294, 96560: 236
[2025-12-03 02:55:49] 2025-12-03 07:54:45,002 | INFO     | --------------------------------------------------
[2025-12-03 02:55:49] 2025-12-03 07:54:45,002 | INFO     | 
[2025-12-03 02:55:49] 2025-12-03 07:54:45,003 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-12-03 02:55:49] 2025-12-03 07:54:45,066 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 02:55:49] 2025-12-03 07:54:45,067 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 02:55:49] 2025-12-03 07:54:45,067 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 02:55:49] 2025-12-03 07:54:45,067 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 02:55:49] 2025-12-03 07:54:45,067 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 02:55:49] 2025-12-03 07:54:45,067 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 02:55:49] 2025-12-03 07:54:45,067 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 02:55:49] 2025-12-03 07:54:45,067 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 02:55:49] 2025-12-03 07:54:45,067 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 02:55:49] 2025-12-03 07:54:45,067 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 02:55:49] 2025-12-03 07:54:45,067 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 02:55:49] 2025-12-03 07:54:45,067 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 02:55:49] 2025-12-03 07:54:45,068 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 02:55:49] 2025-12-03 07:54:45,068 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 02:55:49] 2025-12-03 07:54:45,068 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 02:55:49] 2025-12-03 07:54:45,068 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 02:55:49] 2025-12-03 07:54:45,068 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 02:55:49] 2025-12-03 07:54:45,068 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 02:55:49] 2025-12-03 07:54:45,068 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 02:55:49] 2025-12-03 07:54:45,068 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 02:55:49] 2025-12-03 07:54:45,068 | INFO     | job 6895348451 has completed (purged errors)
[2025-12-03 02:55:49] 2025-12-03 07:54:45,068 | INFO     | overall cleanup function is called
[2025-12-03 02:55:49] 2025-12-03 07:54:46,135 | INFO     | --- collectZombieJob: --- 10, [3682992]
[2025-12-03 02:55:49] 2025-12-03 07:54:46,135 | INFO     | zombie collector waiting for pid 3682992
[2025-12-03 02:55:49] 2025-12-03 07:54:46,135 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 02:55:49] 2025-12-03 07:54:46,136 | INFO     | collected zombie processes
[2025-12-03 02:55:49] 2025-12-03 07:54:46,136 | INFO     | will attempt to kill all subprocesses of pid=3682992
[2025-12-03 02:55:49] 2025-12-03 07:54:46,770 | INFO     | process IDs to be killed: [3682992] (in reverse order)
[2025-12-03 02:55:49] 2025-12-03 07:54:46,915 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 02:55:49] 2025-12-03 07:54:46,915 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 02:55:49] 2025-12-03 07:54:46,934 | INFO     | did not find any defunct processes belonging to 3682992
[2025-12-03 02:55:49] 2025-12-03 07:54:46,959 | INFO     | did not find any defunct processes belonging to 3682992
[2025-12-03 02:55:49] 2025-12-03 07:54:46,974 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 02:55:49] 2025-12-03 07:54:46,974 | INFO     | ready for new job
[2025-12-03 02:55:49] 2025-12-03 07:54:46,974 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 02:55:49] 2025-12-03 07:54:46,980 | INFO     | ***************************************
[2025-12-03 02:55:49] 2025-12-03 07:54:46,983 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 02:55:49] 2025-12-03 07:54:46,983 | INFO     | ***************************************
[2025-12-03 02:55:49] 2025-12-03 07:54:46,983 | INFO     | 
[2025-12-03 02:55:49] 2025-12-03 07:54:46,988 | INFO     | architecture information:
[2025-12-03 02:55:49] 2025-12-03 07:54:47,008 | INFO     | executing command: cat /etc/os-release
[2025-12-03 02:55:49] 2025-12-03 07:54:47,066 | INFO     | cat /etc/os-release:
[2025-12-03 02:55:49] NAME="CentOS Linux"
[2025-12-03 02:55:49] VERSION="7 (Core)"
[2025-12-03 02:55:49] ID="centos"
[2025-12-03 02:55:49] ID_LIKE="rhel fedora"
[2025-12-03 02:55:49] VERSION_ID="7"
[2025-12-03 02:55:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 02:55:49] ANSI_COLOR="0;31"
[2025-12-03 02:55:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 02:55:49] HOME_URL="https://www.centos.org/"
[2025-12-03 02:55:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 02:55:49] 
[2025-12-03 02:55:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 02:55:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 02:55:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 02:55:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 02:55:49] 
[2025-12-03 02:55:49] 2025-12-03 07:54:47,067 | INFO     | ***************************************
[2025-12-03 02:55:49] 2025-12-03 07:54:47,570 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-12-03 02:55:49] 2025-12-03 07:54:47,614 | INFO     | sufficient remaining disk space (119573315584 B)
[2025-12-03 02:55:49] 2025-12-03 07:54:47,615 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 02:55:49] 2025-12-03 07:54:47,615 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 02:55:49] 2025-12-03 07:54:47,615 | INFO     | update_server=False
[2025-12-03 02:55:49] 2025-12-03 07:54:47,615 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 02:55:49] 2025-12-03 07:54:47,843 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 02:55:49] 2025-12-03 07:54:47,843 | INFO     | aborting loop
[2025-12-03 02:55:49] 2025-12-03 07:54:47,914 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 02:55:49] 2025-12-03 07:54:48,173 | INFO     | all data control threads have been joined
[2025-12-03 02:55:49] 2025-12-03 07:54:48,363 | INFO     | all payload control threads have been joined
[2025-12-03 02:55:49] 2025-12-03 07:54:48,625 | INFO     | [job] retrieve thread has finished
[2025-12-03 02:55:49] 2025-12-03 07:54:48,654 | INFO     | [job] validate thread has finished
[2025-12-03 02:55:49] 2025-12-03 07:54:48,671 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 02:55:49] 2025-12-03 07:54:48,779 | INFO     | all job control threads have been joined
[2025-12-03 02:55:49] 2025-12-03 07:54:48,849 | INFO     | [job] job monitor thread has finished
[2025-12-03 02:55:49] 2025-12-03 07:54:48,927 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 02:55:49] 2025-12-03 07:54:49,076 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 02:55:49] 2025-12-03 07:54:49,077 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 02:55:49] 2025-12-03 07:54:49,089 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 02:55:49] 2025-12-03 07:54:49,189 | INFO     | [data] control thread has finished
[2025-12-03 02:55:49] 2025-12-03 07:54:49,373 | INFO     | [payload] control thread has finished
[2025-12-03 02:55:49] 2025-12-03 07:54:49,595 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 02:55:49] 2025-12-03 07:54:49,650 | INFO     | [payload] failed_post thread has finished
[2025-12-03 02:55:49] 2025-12-03 07:54:49,785 | INFO     | [job] control thread has finished
[2025-12-03 02:55:49] 2025-12-03 07:54:49,816 | INFO     | [data] copytool_in thread has finished
[2025-12-03 02:55:49] 2025-12-03 07:54:50,192 | INFO     | [payload] validate_post thread has finished
[2025-12-03 02:55:49] 2025-12-03 07:54:50,601 | INFO     | [job] queue monitor thread has finished
[2025-12-03 02:55:49] 2025-12-03 07:54:51,095 | INFO     | [data] copytool_out thread has finished
[2025-12-03 02:55:49] 2025-12-03 07:54:51,942 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 02:55:49] 2025-12-03 07:55:17,651 | INFO     | PID=3657146 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 02:55:49] 2025-12-03 07:55:17,651 | INFO     | .. there are 32 such processes running
[2025-12-03 02:55:49] 2025-12-03 07:55:17,651 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 02:55:49] 2025-12-03 07:55:17,651 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 02:55:49] 2025-12-03 07:55:17,651 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 02:55:49] 2025-12-03 07:55:42,329 | INFO     | [monitor] cgroup control has ended
[2025-12-03 02:55:49] 2025-12-03 07:55:42,697 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140080657631040)>', '<ExcThread(monitor, started 140080308000512)>']
[2025-12-03 02:55:49] 2025-12-03 07:55:42,826 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 02:55:49] 2025-12-03 07:55:42,826 | INFO     | [monitor] control thread has ended
[2025-12-03 02:55:49] 2025-12-03 07:55:47,723 | INFO     | all workflow threads have been joined
[2025-12-03 02:55:49] 2025-12-03 07:55:47,723 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 02:55:49] 2025-12-03 07:55:47,724 | INFO     | traces error code: 0
[2025-12-03 02:55:49] 2025-12-03 07:55:47,724 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 02:55:49] 2025-12-03 07:55:48,028 [wrapper] ==== pilot stdout END ====
[2025-12-03 02:55:49] 2025-12-03 07:55:48,054 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 02:55:49] 2025-12-03 07:55:48,078 [wrapper] pilotpid: 3657146
[2025-12-03 02:55:49] 2025-12-03 07:55:48,100 [wrapper] Pilot exit status: 0
[2025-12-03 02:55:49] 2025-12-03 07:55:48,175 [wrapper] pandaids: 6895348451
[2025-12-03 02:55:49] 2025-12-03 07:55:48,714 [wrapper] cleanup supervisor_pilot 1226383 3657147
[2025-12-03 02:55:49] 2025-12-03 07:55:48,735 [wrapper] Test setup, not cleaning
[2025-12-03 02:55:49] 2025-12-03 07:55:48,763 [wrapper] apfmon messages muted
[2025-12-03 02:55:49] 2025-12-03 07:55:48,792 [wrapper] ==== wrapper stdout END ====
[2025-12-03 02:55:49] 2025-12-03 07:55:48,817 [wrapper] ==== wrapper stderr END ====
[2025-12-03 02:55:49]  *** Error codes and diagnostics ***
[2025-12-03 02:55:49]     "exeErrorCode": 0,
[2025-12-03 02:55:49]     "exeErrorDiag": "",
[2025-12-03 02:55:49]     "pilotErrorCode": 0,
[2025-12-03 02:55:49]     "pilotErrorDiag": "",
[2025-12-03 02:55:49]  *** Listing of results directory ***
[2025-12-03 02:55:49] total 1325880
[2025-12-03 02:55:49] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 14:25 pilot3.tar.gz
[2025-12-03 02:55:49] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 14:54 queuedata.json
[2025-12-03 02:55:49] -rwx------. 1 boincer umatlas     36292 Nov 22 14:54 runpilot2-wrapper.sh
[2025-12-03 02:55:49] -rw-r--r--. 1 boincer umatlas       100 Dec  2 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 02:55:49] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 00:02 run_atlas
[2025-12-03 02:55:49] -rw-r--r--. 1 boincer umatlas       105 Dec  2 00:02 job.xml
[2025-12-03 02:55:49] -rw-r--r--. 2 boincer umatlas 408766456 Dec  2 00:02 EVNT.47483658._000481.pool.root.1
[2025-12-03 02:55:49] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 00:02 start_atlas.sh
[2025-12-03 02:55:49] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 00:02 shared
[2025-12-03 02:55:49] -rw-r--r--. 2 boincer umatlas    590104 Dec  2 00:02 input.tar.gz
[2025-12-03 02:55:49] -rw-r--r--. 1 boincer umatlas         0 Dec  2 00:02 boinc_lockfile
[2025-12-03 02:55:49] -rw-r--r--. 1 boincer umatlas      2785 Dec  2 00:02 pandaJob.out
[2025-12-03 02:55:49] -rw-------. 1 boincer umatlas        57 Dec  2 00:02 setup.sh.local
[2025-12-03 02:55:49] -rw-------. 1 boincer umatlas    992001 Dec  2 00:03 agis_schedconf.cvmfs.json
[2025-12-03 02:55:49] drwx------. 5 boincer umatlas      4096 Dec  2 00:03 pilot3
[2025-12-03 02:55:49] -rw-r--r--. 1 boincer umatlas       533 Dec  3 02:45 boinc_task_state.xml
[2025-12-03 02:55:49] -rw-r--r--. 1 boincer umatlas      6949 Dec  3 02:47 init_data.xml
[2025-12-03 02:55:49] -rw-------. 1 boincer umatlas 913939646 Dec  3 02:53 HITS.47556137._004766.pool.root.1
[2025-12-03 02:55:49] -rw-------. 1 boincer umatlas        95 Dec  3 02:54 pilot_heartbeat.json
[2025-12-03 02:55:49] -rw-------. 1 boincer umatlas      1059 Dec  3 02:54 memory_monitor_summary.json
[2025-12-03 02:55:49] -rw-------. 1 boincer umatlas   1516240 Dec  3 02:54 agis_ddmendpoints.agis.ALL.json
[2025-12-03 02:55:49] -rw-------. 1 boincer umatlas   3001628 Dec  3 02:54 log.47556137._004766.job.log.tgz.1
[2025-12-03 02:55:49] -rw-------. 1 boincer umatlas      8602 Dec  3 02:54 heartbeat.json
[2025-12-03 02:55:49] -rw-r--r--. 1 boincer umatlas        29 Dec  3 02:55 wrapper_checkpoint.txt
[2025-12-03 02:55:49] -rw-------. 1 boincer umatlas      4825 Dec  3 02:55 pilotlog.txt
[2025-12-03 02:55:49] -rw-------. 1 boincer umatlas  12535272 Dec  3 02:55 log.47556137._004766.job.log.1
[2025-12-03 02:55:49] -rw-------. 1 boincer umatlas       353 Dec  3 02:55 output.list
[2025-12-03 02:55:49] -rw-r--r--. 1 boincer umatlas       620 Dec  3 02:55 runtime_log
[2025-12-03 02:55:49] -rw-------. 1 boincer umatlas  15554560 Dec  3 02:55 result.tar.gz
[2025-12-03 02:55:49] -rw-r--r--. 1 boincer umatlas      9345 Dec  3 02:55 runtime_log.err
[2025-12-03 02:55:49] -rw-------. 1 boincer umatlas       664 Dec  3 02:55 OPtLDmnr8g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNGIKDmF9jCxm.diag
[2025-12-03 02:55:49] -rw-r--r--. 1 boincer umatlas      8192 Dec  3 02:55 boinc_mmap_file
[2025-12-03 02:55:49] -rw-r--r--. 1 boincer umatlas     21398 Dec  3 02:55 stderr.txt
[2025-12-03 02:55:49] HITS file was successfully produced:
[2025-12-03 02:55:49] -rw-------. 1 boincer umatlas 913939646 Dec  3 02:53 shared/HITS.pool.root.1
[2025-12-03 02:55:49]  *** Contents of shared directory: ***
[2025-12-03 02:55:49] total 1307504
[2025-12-03 02:55:49] -rw-r--r--. 2 boincer umatlas 408766456 Dec  2 00:02 ATLAS.root_0
[2025-12-03 02:55:49] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 00:02 start_atlas.sh
[2025-12-03 02:55:49] -rw-r--r--. 2 boincer umatlas    590104 Dec  2 00:02 input.tar.gz
[2025-12-03 02:55:49] -rw-------. 1 boincer umatlas 913939646 Dec  3 02:53 HITS.pool.root.1
[2025-12-03 02:55:49] -rw-------. 1 boincer umatlas  15554560 Dec  3 02:55 result.tar.gz
02:56:11 (3647250): run_atlas exited; CPU time 208653.727955
02:56:11 (3647250): called boinc_finish(0)

</stderr_txt>
]]>

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