Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:05 (1410764): wrapper (7.7.26015): starting
00:02:05 (1410764): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 00:02:05] Arguments: --nthreads 8
[2025-12-02 00:02:05] Threads: 8
[2025-12-02 00:02:05] Checking for CVMFS
[2025-12-02 00:02:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 00:02:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 00:02:06] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 00:02:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 00:02:08] 2.13.2.0 1657905 38452 238228 153544 1 513 40602173 40960000 32299 16776704 0 446102072 99.694 351193735 48315 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 00:02:08] CVMFS is ok
[2025-12-02 00:02:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 00:02:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 00:02:08] Further information can be found at the LHC@home message board.
[2025-12-02 00:02:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 00:02:08] Checking for apptainer binary...
[2025-12-02 00:02:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 00:02:08] Running /usr/bin/apptainer --version
[2025-12-02 00:02:08] apptainer version 1.4.4-1.el9
[2025-12-02 00:02:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 00:02:08] c-208-39.aglt2.org
[2025-12-02 00:02:08] apptainer works
[2025-12-02 00:02:08] Set ATHENA_PROC_NUMBER=8
[2025-12-02 00:02:08] Set ATHENA_CORE_NUMBER=8
[2025-12-02 00:02:08] Starting ATLAS job with PandaID=6894252684
[2025-12-02 00:02:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 13:09:25]  *** The last 200 lines of the pilot log: ***
[2025-12-02 13:09:25] 2025-12-02 18:08:36,376 | INFO     | monitor loop #2548: job 0:6894252684 is in state 'finished'
[2025-12-02 13:09:25] 2025-12-02 18:08:36,378 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 13:09:25] 2025-12-02 18:08:36,909 | INFO     | time since job start (47107s) is within the limit (172800.0s)
[2025-12-02 13:09:25] 2025-12-02 18:08:38,882 | INFO     | monitor loop #2549: job 0:6894252684 is in state 'finished'
[2025-12-02 13:09:25] 2025-12-02 18:08:38,882 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 13:09:25] 2025-12-02 18:08:38,935 | INFO     | time since job start (47109s) is within the limit (172800.0s)
[2025-12-02 13:09:25] 2025-12-02 18:08:41,387 | INFO     | monitor loop #2550: job 0:6894252684 is in state 'finished'
[2025-12-02 13:09:25] 2025-12-02 18:08:41,387 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 13:09:25] 2025-12-02 18:08:42,076 | INFO     | PID=1432883 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 13:09:25] 2025-12-02 18:08:42,076 | INFO     | .. there are 55 such processes running
[2025-12-02 13:09:25] 2025-12-02 18:08:43,077 | INFO     | time since job start (47114s) is within the limit (172800.0s)
[2025-12-02 13:09:25] 2025-12-02 18:08:43,894 | INFO     | monitor loop #2551: job 0:6894252684 is in state 'finished'
[2025-12-02 13:09:25] 2025-12-02 18:08:43,894 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 13:09:25] 2025-12-02 18:08:45,086 | INFO     | time since job start (47116s) is within the limit (172800.0s)
[2025-12-02 13:09:25] 2025-12-02 18:08:46,421 | INFO     | monitor loop #2552: job 0:6894252684 is in state 'finished'
[2025-12-02 13:09:25] 2025-12-02 18:08:46,421 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 13:09:25] 2025-12-02 18:08:47,093 | INFO     | time since job start (47118s) is within the limit (172800.0s)
[2025-12-02 13:09:25] 2025-12-02 18:08:47,725 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 13:09:25] 2025-12-02 18:08:47,734 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3781.754476562499
[2025-12-02 13:09:25] 2025-12-02 18:08:47,759 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6894252684/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 13:09:25] 2025-12-02 18:08:47,760 | INFO     | extracted standard info from prmon json
[2025-12-02 13:09:25] 2025-12-02 18:08:47,760 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 13:09:25] 2025-12-02 18:08:47,760 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 13:09:25] 2025-12-02 18:08:47,777 | INFO     | fitting pss+swap vs Time
[2025-12-02 13:09:25] 2025-12-02 18:08:47,778 | INFO     | sum of square deviations: 141007466262.78024
[2025-12-02 13:09:25] 2025-12-02 18:08:47,793 | INFO     | sum of deviations: 393075682056.31323
[2025-12-02 13:09:25] 2025-12-02 18:08:47,793 | INFO     | mean x: 1764675425.983095
[2025-12-02 13:09:25] 2025-12-02 18:08:47,793 | INFO     | mean y: 2690996.7932379716
[2025-12-02 13:09:25] 2025-12-02 18:08:47,793 | INFO     | intersect: -4916559132.725709
[2025-12-02 13:09:25] 2025-12-02 18:08:47,793 | INFO     | chi2: 32.25109538758625
[2025-12-02 13:09:25] 2025-12-02 18:08:47,794 | INFO     | sum of square deviations: 138275679392.93582
[2025-12-02 13:09:25] 2025-12-02 18:08:47,809 | INFO     | sum of deviations: 643478486431.1624
[2025-12-02 13:09:25] 2025-12-02 18:08:47,809 | INFO     | mean x: 1764675273.5091622
[2025-12-02 13:09:25] 2025-12-02 18:08:47,809 | INFO     | mean y: 2704967.3337696334
[2025-12-02 13:09:25] 2025-12-02 18:08:47,809 | INFO     | intersect: -8209372377.181413
[2025-12-02 13:09:25] 2025-12-02 18:08:47,809 | INFO     | chi2: 28.313252263146197
[2025-12-02 13:09:25] 2025-12-02 18:08:47,809 | INFO     | current chi2=28.313252263146197 (change=12.209951560143795 %)
[2025-12-02 13:09:25] 2025-12-02 18:08:47,809 | INFO     | right removable region: 763
[2025-12-02 13:09:25] 2025-12-02 18:08:47,810 | INFO     | sum of square deviations: 138273810962.93582
[2025-12-02 13:09:25] 2025-12-02 18:08:47,825 | INFO     | sum of deviations: 101909941735.47107
[2025-12-02 13:09:25] 2025-12-02 18:08:47,825 | INFO     | mean x: 1764675578.5091622
[2025-12-02 13:09:25] 2025-12-02 18:08:47,825 | INFO     | mean y: 2707238.3612565445
[2025-12-02 13:09:25] 2025-12-02 18:08:47,825 | INFO     | intersect: -1297886013.0685666
[2025-12-02 13:09:25] 2025-12-02 18:08:47,826 | INFO     | chi2: 28.141631077768263
[2025-12-02 13:09:25] 2025-12-02 18:08:47,826 | INFO     | current chi2=28.141631077768263 (change=12.742092200067583 %)
[2025-12-02 13:09:25] 2025-12-02 18:08:47,826 | INFO     | left removable region: 10
[2025-12-02 13:09:25] 2025-12-02 18:08:47,826 | INFO     | sum of square deviations: 132386769103.54646
[2025-12-02 13:09:25] 2025-12-02 18:08:47,840 | INFO     | sum of deviations: 151756298770.54056
[2025-12-02 13:09:25] 2025-12-02 18:08:47,841 | INFO     | mean x: 1764675548.067729
[2025-12-02 13:09:25] 2025-12-02 18:08:47,841 | INFO     | mean y: 2738743.6560424967
[2025-12-02 13:09:25] 2025-12-02 18:08:47,841 | INFO     | intersect: -2020126770.164097
[2025-12-02 13:09:25] 2025-12-02 18:08:47,841 | INFO     | chi2: 20.37067206572858
[2025-12-02 13:09:25] 2025-12-02 18:08:47,841 | INFO     | current memory leak: 1.15 B/s (using 753 data points, chi2=20.37)
[2025-12-02 13:09:25] 2025-12-02 18:08:47,846 | INFO     | could have reported an average CPU frequency of 3735 MHz (29 samples)
[2025-12-02 13:09:25] 2025-12-02 18:08:47,846 | INFO     | ..............................
[2025-12-02 13:09:25] 2025-12-02 18:08:47,846 | INFO     | . Timing measurements:
[2025-12-02 13:09:25] 2025-12-02 18:08:47,846 | INFO     | . get job = 0 s
[2025-12-02 13:09:25] 2025-12-02 18:08:47,846 | INFO     | . initial setup = 6 s
[2025-12-02 13:09:25] 2025-12-02 18:08:47,846 | INFO     | . payload setup = 57 s
[2025-12-02 13:09:25] 2025-12-02 18:08:47,846 | INFO     | . stage-in = 0 s
[2025-12-02 13:09:25] 2025-12-02 18:08:47,846 | INFO     | . payload execution = 46932 s
[2025-12-02 13:09:25] 2025-12-02 18:08:47,846 | INFO     | . stage-out = 6 s
[2025-12-02 13:09:25] 2025-12-02 18:08:47,846 | INFO     | . log creation = 2 s
[2025-12-02 13:09:25] 2025-12-02 18:08:47,846 | INFO     | ..............................
[2025-12-02 13:09:25] 2025-12-02 18:08:48,147 | INFO     | 
[2025-12-02 13:09:25] 2025-12-02 18:08:48,147 | INFO     | job summary report
[2025-12-02 13:09:25] 2025-12-02 18:08:48,147 | INFO     | --------------------------------------------------
[2025-12-02 13:09:25] 2025-12-02 18:08:48,147 | INFO     | PanDA job id: 6894252684
[2025-12-02 13:09:25] 2025-12-02 18:08:48,147 | INFO     | task id: 47533967
[2025-12-02 13:09:25] 2025-12-02 18:08:48,147 | INFO     | errors: (none)
[2025-12-02 13:09:25] 2025-12-02 18:08:48,147 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 13:09:25] 2025-12-02 18:08:48,147 | INFO     | pilot state: finished 
[2025-12-02 13:09:25] 2025-12-02 18:08:48,147 | INFO     | transexitcode: 0
[2025-12-02 13:09:25] 2025-12-02 18:08:48,147 | INFO     | exeerrorcode: 0
[2025-12-02 13:09:25] 2025-12-02 18:08:48,147 | INFO     | exeerrordiag: 
[2025-12-02 13:09:25] 2025-12-02 18:08:48,147 | INFO     | exitcode: 0
[2025-12-02 13:09:25] 2025-12-02 18:08:48,147 | INFO     | exitmsg: OK
[2025-12-02 13:09:25] 2025-12-02 18:08:48,147 | INFO     | cpuconsumptiontime: 141040 s
[2025-12-02 13:09:25] 2025-12-02 18:08:48,147 | INFO     | nevents: 1000
[2025-12-02 13:09:25] 2025-12-02 18:08:48,147 | INFO     | neventsw: 0
[2025-12-02 13:09:25] 2025-12-02 18:08:48,147 | INFO     | pid: 1485794
[2025-12-02 13:09:25] 2025-12-02 18:08:48,147 | INFO     | pgrp: 1485794
[2025-12-02 13:09:25] 2025-12-02 18:08:48,147 | INFO     | corecount: 8
[2025-12-02 13:09:25] 2025-12-02 18:08:48,148 | INFO     | event service: False
[2025-12-02 13:09:25] 2025-12-02 18:08:48,148 | INFO     | sizes: {0: 2283485, 1: 2284170, 2: 2284369, 13: 2284369, 23: 2284425, 34: 2284453, 43: 2284871, 45: 2284899, 46992: 2330909, 46999: 2339903, 47000: 2339959, 47031:
[2025-12-02 13:09:25] 2025-12-02 18:08:48,148 | INFO     | --------------------------------------------------
[2025-12-02 13:09:25] 2025-12-02 18:08:48,148 | INFO     | 
[2025-12-02 13:09:25] 2025-12-02 18:08:48,148 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-12-02 13:09:25] 2025-12-02 18:08:48,299 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 13:09:25] 2025-12-02 18:08:48,299 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 13:09:25] 2025-12-02 18:08:48,299 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 13:09:25] 2025-12-02 18:08:48,299 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 13:09:25] 2025-12-02 18:08:48,299 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 13:09:25] 2025-12-02 18:08:48,299 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 13:09:25] 2025-12-02 18:08:48,299 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 13:09:25] 2025-12-02 18:08:48,300 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 13:09:25] 2025-12-02 18:08:48,300 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 13:09:25] 2025-12-02 18:08:48,300 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 13:09:25] 2025-12-02 18:08:48,300 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 13:09:25] 2025-12-02 18:08:48,300 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 13:09:25] 2025-12-02 18:08:48,300 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 13:09:25] 2025-12-02 18:08:48,300 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 13:09:25] 2025-12-02 18:08:48,300 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 13:09:25] 2025-12-02 18:08:48,300 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 13:09:25] 2025-12-02 18:08:48,300 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 13:09:25] 2025-12-02 18:08:48,300 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 13:09:25] 2025-12-02 18:08:48,300 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 13:09:25] 2025-12-02 18:08:48,307 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 13:09:25] 2025-12-02 18:08:48,307 | INFO     | job 6894252684 has completed (purged errors)
[2025-12-02 13:09:25] 2025-12-02 18:08:48,307 | INFO     | overall cleanup function is called
[2025-12-02 13:09:25] 2025-12-02 18:08:49,324 | INFO     | --- collectZombieJob: --- 10, [1485794]
[2025-12-02 13:09:25] 2025-12-02 18:08:49,324 | INFO     | zombie collector waiting for pid 1485794
[2025-12-02 13:09:25] 2025-12-02 18:08:49,324 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 13:09:25] 2025-12-02 18:08:49,324 | INFO     | collected zombie processes
[2025-12-02 13:09:25] 2025-12-02 18:08:49,324 | INFO     | will attempt to kill all subprocesses of pid=1485794
[2025-12-02 13:09:25] 2025-12-02 18:08:51,278 | INFO     | process IDs to be killed: [1485794] (in reverse order)
[2025-12-02 13:09:25] 2025-12-02 18:08:51,661 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 13:09:25] 2025-12-02 18:08:51,661 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 13:09:25] 2025-12-02 18:08:51,711 | INFO     | did not find any defunct processes belonging to 1485794
[2025-12-02 13:09:25] 2025-12-02 18:08:51,834 | INFO     | did not find any defunct processes belonging to 1485794
[2025-12-02 13:09:25] 2025-12-02 18:08:51,835 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 13:09:25] 2025-12-02 18:08:51,835 | INFO     | ready for new job
[2025-12-02 13:09:25] 2025-12-02 18:08:51,835 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 13:09:25] 2025-12-02 18:08:51,838 | INFO     | ***************************************
[2025-12-02 13:09:25] 2025-12-02 18:08:51,838 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 13:09:25] 2025-12-02 18:08:51,838 | INFO     | ***************************************
[2025-12-02 13:09:25] 2025-12-02 18:08:51,838 | INFO     | 
[2025-12-02 13:09:25] 2025-12-02 18:08:51,852 | INFO     | architecture information:
[2025-12-02 13:09:25] 2025-12-02 18:08:51,854 | INFO     | executing command: cat /etc/os-release
[2025-12-02 13:09:25] 2025-12-02 18:08:51,930 | INFO     | cat /etc/os-release:
[2025-12-02 13:09:25] NAME="CentOS Linux"
[2025-12-02 13:09:25] VERSION="7 (Core)"
[2025-12-02 13:09:25] ID="centos"
[2025-12-02 13:09:25] ID_LIKE="rhel fedora"
[2025-12-02 13:09:25] VERSION_ID="7"
[2025-12-02 13:09:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 13:09:25] ANSI_COLOR="0;31"
[2025-12-02 13:09:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 13:09:25] HOME_URL="https://www.centos.org/"
[2025-12-02 13:09:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 13:09:25] 
[2025-12-02 13:09:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 13:09:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 13:09:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 13:09:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 13:09:25] 
[2025-12-02 13:09:25] 2025-12-02 18:08:51,930 | INFO     | ***************************************
[2025-12-02 13:09:25] 2025-12-02 18:08:52,434 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-12-02 13:09:25] 2025-12-02 18:08:52,679 | INFO     | sufficient remaining disk space (164680957952 B)
[2025-12-02 13:09:25] 2025-12-02 18:08:52,683 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 13:09:25] 2025-12-02 18:08:52,685 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 13:09:25] 2025-12-02 18:08:52,688 | INFO     | update_server=False
[2025-12-02 13:09:25] 2025-12-02 18:08:52,690 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 13:09:25] 2025-12-02 18:08:52,717 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 13:09:25] 2025-12-02 18:08:52,717 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 13:09:25] 2025-12-02 18:08:52,719 | INFO     | aborting loop
[2025-12-02 13:09:25] 2025-12-02 18:08:52,737 | INFO     | all payload control threads have been joined
[2025-12-02 13:09:25] 2025-12-02 18:08:53,044 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 13:09:25] 2025-12-02 18:08:53,145 | INFO     | all job control threads have been joined
[2025-12-02 13:09:25] 2025-12-02 18:08:53,448 | INFO     | all data control threads have been joined
[2025-12-02 13:09:25] 2025-12-02 18:08:53,724 | INFO     | [job] retrieve thread has finished
[2025-12-02 13:09:25] 2025-12-02 18:08:53,728 | INFO     | [job] job monitor thread has finished
[2025-12-02 13:09:25] 2025-12-02 18:08:53,743 | INFO     | [payload] control thread has finished
[2025-12-02 13:09:25] 2025-12-02 18:08:53,925 | INFO     | [data] copytool_in thread has finished
[2025-12-02 13:09:25] 2025-12-02 18:08:54,055 | INFO     | [job] queue monitor thread has finished
[2025-12-02 13:09:25] 2025-12-02 18:08:54,151 | INFO     | [job] control thread has finished
[2025-12-02 13:09:25] 2025-12-02 18:08:54,199 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 13:09:25] 2025-12-02 18:08:54,361 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 13:09:25] 2025-12-02 18:08:54,434 | INFO     | [payload] failed_post thread has finished
[2025-12-02 13:09:25] 2025-12-02 18:08:54,466 | INFO     | [data] control thread has finished
[2025-12-02 13:09:25] 2025-12-02 18:08:54,726 | INFO     | [data] copytool_out thread has finished
[2025-12-02 13:09:25] 2025-12-02 18:08:54,781 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 13:09:25] 2025-12-02 18:08:54,965 | INFO     | [payload] validate_post thread has finished
[2025-12-02 13:09:25] 2025-12-02 18:08:55,121 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 13:09:25] 2025-12-02 18:08:55,126 | INFO     | [job] validate thread has finished
[2025-12-02 13:09:25] 2025-12-02 18:08:55,126 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 13:09:25] 2025-12-02 18:08:56,929 | INFO     | [monitor] cgroup control has ended
[2025-12-02 13:09:25] 2025-12-02 18:08:58,377 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 13:09:25] 2025-12-02 18:09:00,048 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139895549781824)>', '<ExcThread(monitor, started 139895037212416)>']
[2025-12-02 13:09:25] 2025-12-02 18:09:05,074 | INFO     | all workflow threads have been joined
[2025-12-02 13:09:25] 2025-12-02 18:09:05,074 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 13:09:25] 2025-12-02 18:09:05,074 | INFO     | traces error code: 0
[2025-12-02 13:09:25] 2025-12-02 18:09:05,074 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 13:09:25] 2025-12-02 18:09:22,273 | INFO     | PID=1432883 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 13:09:25] 2025-12-02 18:09:22,273 | INFO     | .. there are 55 such processes running
[2025-12-02 13:09:25] 2025-12-02 18:09:22,278 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 13:09:25] 2025-12-02 18:09:22,278 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 13:09:25] 2025-12-02 18:09:22,278 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 13:09:25] 2025-12-02 18:09:22,278 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 13:09:25] 2025-12-02 18:09:22,278 | INFO     | [monitor] control thread has ended
[2025-12-02 13:09:25] 2025-12-02 18:09:22,447 [wrapper] ==== pilot stdout END ====
[2025-12-02 13:09:25] 2025-12-02 18:09:22,482 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 13:09:25] 2025-12-02 18:09:22,494 [wrapper] pilotpid: 1432883
[2025-12-02 13:09:25] 2025-12-02 18:09:22,507 [wrapper] Pilot exit status: 0
[2025-12-02 13:09:25] 2025-12-02 18:09:22,614 [wrapper] pandaids: 6894252684
[2025-12-02 13:09:25] 2025-12-02 18:09:24,370 [wrapper] cleanup supervisor_pilot 2866525 1432884
[2025-12-02 13:09:25] 2025-12-02 18:09:24,382 [wrapper] Test setup, not cleaning
[2025-12-02 13:09:25] 2025-12-02 18:09:24,424 [wrapper] apfmon messages muted
[2025-12-02 13:09:25] 2025-12-02 18:09:24,438 [wrapper] ==== wrapper stdout END ====
[2025-12-02 13:09:25] 2025-12-02 18:09:24,463 [wrapper] ==== wrapper stderr END ====
[2025-12-02 13:09:25]  *** Error codes and diagnostics ***
[2025-12-02 13:09:25]     "exeErrorCode": 0,
[2025-12-02 13:09:25]     "exeErrorDiag": "",
[2025-12-02 13:09:25]     "pilotErrorCode": 0,
[2025-12-02 13:09:25]     "pilotErrorDiag": "",
[2025-12-02 13:09:25]  *** Listing of results directory ***
[2025-12-02 13:09:25] total 1312908
[2025-12-02 13:09:25] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 20:54 pilot3.tar.gz
[2025-12-02 13:09:25] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 21:02 queuedata.json
[2025-12-02 13:09:25] -rwx------. 1 boincer umatlas     36292 Nov 20 21:03 runpilot2-wrapper.sh
[2025-12-02 13:09:25] -rw-r--r--. 1 boincer umatlas       100 Dec  2 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 13:09:25] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 00:02 run_atlas
[2025-12-02 13:09:25] -rw-r--r--. 1 boincer umatlas       105 Dec  2 00:02 job.xml
[2025-12-02 13:09:25] -rw-r--r--. 2 boincer umatlas 410017349 Dec  2 00:02 EVNT.47493127._002113.pool.root.1
[2025-12-02 13:09:25] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 00:02 start_atlas.sh
[2025-12-02 13:09:25] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 00:02 shared
[2025-12-02 13:09:25] -rw-r--r--. 2 boincer umatlas    590103 Dec  2 00:02 input.tar.gz
[2025-12-02 13:09:25] -rw-r--r--. 1 boincer umatlas         0 Dec  2 00:02 boinc_lockfile
[2025-12-02 13:09:25] -rw-r--r--. 1 boincer umatlas      2785 Dec  2 00:02 pandaJob.out
[2025-12-02 13:09:25] -rw-------. 1 boincer umatlas        57 Dec  2 00:02 setup.sh.local
[2025-12-02 13:09:25] -rw-------. 1 boincer umatlas    992001 Dec  2 00:03 agis_schedconf.cvmfs.json
[2025-12-02 13:09:25] drwx------. 5 boincer umatlas      4096 Dec  2 00:03 pilot3
[2025-12-02 13:09:25] -rw-r--r--. 1 boincer umatlas       533 Dec  2 12:31 boinc_task_state.xml
[2025-12-02 13:09:25] -rw-r--r--. 1 boincer umatlas      7175 Dec  2 13:02 init_data.xml
[2025-12-02 13:09:25] -rw-------. 1 boincer umatlas 915365264 Dec  2 13:05 HITS.47533967._000843.pool.root.1
[2025-12-02 13:09:25] -rw-------. 1 boincer umatlas      1064 Dec  2 13:08 memory_monitor_summary.json
[2025-12-02 13:09:25] -rw-------. 1 boincer umatlas   1516240 Dec  2 13:08 agis_ddmendpoints.agis.ALL.json
[2025-12-02 13:09:25] -rw-------. 1 boincer umatlas   1944557 Dec  2 13:08 log.47533967._000843.job.log.tgz.1
[2025-12-02 13:09:25] -rw-------. 1 boincer umatlas      8619 Dec  2 13:08 heartbeat.json
[2025-12-02 13:09:25] -rw-r--r--. 1 boincer umatlas        29 Dec  2 13:09 wrapper_checkpoint.txt
[2025-12-02 13:09:25] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 13:09 boinc_mmap_file
[2025-12-02 13:09:25] -rw-------. 1 boincer umatlas        95 Dec  2 13:09 pilot_heartbeat.json
[2025-12-02 13:09:25] -rw-------. 1 boincer umatlas       823 Dec  2 13:09 pilotlog.txt
[2025-12-02 13:09:25] -rw-------. 1 boincer umatlas   5618574 Dec  2 13:09 log.47533967._000843.job.log.1
[2025-12-02 13:09:25] -rw-------. 1 boincer umatlas       353 Dec  2 13:09 output.list
[2025-12-02 13:09:25] -rw-r--r--. 1 boincer umatlas       620 Dec  2 13:09 runtime_log
[2025-12-02 13:09:25] -rw-------. 1 boincer umatlas   7577600 Dec  2 13:09 result.tar.gz
[2025-12-02 13:09:25] -rw-r--r--. 1 boincer umatlas      9343 Dec  2 13:09 runtime_log.err
[2025-12-02 13:09:25] -rw-------. 1 boincer umatlas       665 Dec  2 13:09 3wLODmhfVg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhrIKDmCTSaFo.diag
[2025-12-02 13:09:25] -rw-r--r--. 1 boincer umatlas     21659 Dec  2 13:09 stderr.txt
[2025-12-02 13:09:25] HITS file was successfully produced:
[2025-12-02 13:09:25] -rw-------. 1 boincer umatlas 915365264 Dec  2 13:05 shared/HITS.pool.root.1
[2025-12-02 13:09:25]  *** Contents of shared directory: ***
[2025-12-02 13:09:25] total 1302324
[2025-12-02 13:09:25] -rw-r--r--. 2 boincer umatlas 410017349 Dec  2 00:02 ATLAS.root_0
[2025-12-02 13:09:25] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 00:02 start_atlas.sh
[2025-12-02 13:09:25] -rw-r--r--. 2 boincer umatlas    590103 Dec  2 00:02 input.tar.gz
[2025-12-02 13:09:25] -rw-------. 1 boincer umatlas 915365264 Dec  2 13:05 HITS.pool.root.1
[2025-12-02 13:09:25] -rw-------. 1 boincer umatlas   7577600 Dec  2 13:09 result.tar.gz
13:09:27 (1410764): run_atlas exited; CPU time 141670.570020
13:09:27 (1410764): called boinc_finish(0)

</stderr_txt>
]]>

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