Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:27 (1415988): wrapper (7.7.26015): starting
00:02:27 (1415988): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 00:02:27] Arguments: --nthreads 8
[2025-12-02 00:02:27] Threads: 8
[2025-12-02 00:02:27] Checking for CVMFS
[2025-12-02 00:02:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 00:02:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 00:02:28] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 00:02:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 00:02:29] 2.13.2.0 1657905 38452 237060 153544 0 513 40602173 40960000 32466 16776704 0 446111061 99.694 351193735 48315 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 00:02:29] CVMFS is ok
[2025-12-02 00:02:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 00:02:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 00:02:29] Further information can be found at the LHC@home message board.
[2025-12-02 00:02:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 00:02:29] Checking for apptainer binary...
[2025-12-02 00:02:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 00:02:29] Running /usr/bin/apptainer --version
[2025-12-02 00:02:29] apptainer version 1.4.4-1.el9
[2025-12-02 00:02:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 00:02:30] c-208-39.aglt2.org
[2025-12-02 00:02:30] apptainer works
[2025-12-02 00:02:30] Set ATHENA_PROC_NUMBER=8
[2025-12-02 00:02:30] Set ATHENA_CORE_NUMBER=8
[2025-12-02 00:02:30] Starting ATLAS job with PandaID=6897931861
[2025-12-02 00:02:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 16:17:52]  *** The last 200 lines of the pilot log: ***
[2025-12-02 16:17:52] 2025-12-02 21:16:56,316 | INFO     | fitting pss+swap vs Time
[2025-12-02 16:17:52] 2025-12-02 21:16:56,317 | INFO     | sum of square deviations: 268369236454.53812
[2025-12-02 16:17:52] 2025-12-02 21:16:56,329 | INFO     | sum of deviations: 2081699820326.1785
[2025-12-02 16:17:52] 2025-12-02 21:16:56,330 | INFO     | mean x: 1764681127.0220356
[2025-12-02 16:17:52] 2025-12-02 21:16:56,330 | INFO     | mean y: 3326974.277019937
[2025-12-02 16:17:52] 2025-12-02 21:16:56,330 | INFO     | intersect: -13685039224.421276
[2025-12-02 16:17:52] 2025-12-02 21:16:56,330 | INFO     | chi2: 12.938917770556534
[2025-12-02 16:17:52] 2025-12-02 21:16:56,331 | INFO     | sum of square deviations: 264167933693.6327
[2025-12-02 16:17:52] 2025-12-02 21:16:56,373 | INFO     | sum of deviations: 2505706404354.85
[2025-12-02 16:17:52] 2025-12-02 21:16:56,374 | INFO     | mean x: 1764680974.5379746
[2025-12-02 16:17:52] 2025-12-02 21:16:56,374 | INFO     | mean y: 3342364.184599156
[2025-12-02 16:17:52] 2025-12-02 21:16:56,374 | INFO     | intersect: -16735148026.06499
[2025-12-02 16:17:52] 2025-12-02 21:16:56,374 | INFO     | chi2: 8.940901204637937
[2025-12-02 16:17:52] 2025-12-02 21:16:56,374 | INFO     | current chi2=8.940901204637937 (change=30.899157385607474 %)
[2025-12-02 16:17:52] 2025-12-02 21:16:56,375 | INFO     | sum of square deviations: 260010724782.2418
[2025-12-02 16:17:52] 2025-12-02 21:16:56,400 | INFO     | sum of deviations: 2715663064168.481
[2025-12-02 16:17:52] 2025-12-02 21:16:56,401 | INFO     | mean x: 1764680822.0540826
[2025-12-02 16:17:52] 2025-12-02 21:16:56,401 | INFO     | mean y: 3350046.1081654294
[2025-12-02 16:17:52] 2025-12-02 21:16:56,401 | INFO     | intersect: -18427730181.494995
[2025-12-02 16:17:52] 2025-12-02 21:16:56,401 | INFO     | chi2: 7.183074645823183
[2025-12-02 16:17:52] 2025-12-02 21:16:56,401 | INFO     | current chi2=7.183074645823183 (change=19.66050757727769 %)
[2025-12-02 16:17:52] 2025-12-02 21:16:56,401 | INFO     | right removable region: 942
[2025-12-02 16:17:52] 2025-12-02 21:16:56,406 | INFO     | sum of square deviations: 264166176893.63275
[2025-12-02 16:17:52] 2025-12-02 21:16:56,428 | INFO     | sum of deviations: 1635298084642.9343
[2025-12-02 16:17:52] 2025-12-02 21:16:56,429 | INFO     | mean x: 1764681279.5379746
[2025-12-02 16:17:52] 2025-12-02 21:16:56,429 | INFO     | mean y: 3343169.029535865
[2025-12-02 16:17:52] 2025-12-02 21:16:56,429 | INFO     | intersect: -10920765096.33579
[2025-12-02 16:17:52] 2025-12-02 21:16:56,429 | INFO     | chi2: 8.637817367469372
[2025-12-02 16:17:52] 2025-12-02 21:16:56,429 | INFO     | current chi2=8.637817367469372 (change=33.241577691100524 %)
[2025-12-02 16:17:52] 2025-12-02 21:16:56,434 | INFO     | sum of square deviations: 260007211182.24164
[2025-12-02 16:17:52] 2025-12-02 21:16:56,459 | INFO     | sum of deviations: 1289737372173.094
[2025-12-02 16:17:52] 2025-12-02 21:16:56,459 | INFO     | mean x: 1764681432.0540826
[2025-12-02 16:17:52] 2025-12-02 21:16:56,459 | INFO     | mean y: 3355833.468716861
[2025-12-02 16:17:52] 2025-12-02 21:16:56,459 | INFO     | intersect: -8750153665.56141
[2025-12-02 16:17:52] 2025-12-02 21:16:56,460 | INFO     | chi2: 6.106999390976828
[2025-12-02 16:17:52] 2025-12-02 21:16:56,460 | INFO     | current chi2=6.106999390976828 (change=29.299276296623066 %)
[2025-12-02 16:17:52] 2025-12-02 21:16:56,465 | INFO     | sum of square deviations: 255892336870.40176
[2025-12-02 16:17:52] 2025-12-02 21:16:56,483 | INFO     | sum of deviations: 1203521513848.4937
[2025-12-02 16:17:52] 2025-12-02 21:16:56,483 | INFO     | mean x: 1764681584.566098
[2025-12-02 16:17:52] 2025-12-02 21:16:56,483 | INFO     | mean y: 3359027.9840085288
[2025-12-02 16:17:52] 2025-12-02 21:16:56,483 | INFO     | intersect: -8296351225.524586
[2025-12-02 16:17:52] 2025-12-02 21:16:56,495 | INFO     | chi2: 6.019423251187164
[2025-12-02 16:17:52] 2025-12-02 21:16:56,495 | INFO     | current chi2=6.019423251187164 (change=1.4340289589525526 %)
[2025-12-02 16:17:52] 2025-12-02 21:16:56,495 | INFO     | left removable region: 30
[2025-12-02 16:17:52] 2025-12-02 21:16:56,496 | INFO     | sum of square deviations: 235198256850.51654
[2025-12-02 16:17:52] 2025-12-02 21:16:56,521 | INFO     | sum of deviations: 1672398289154.2593
[2025-12-02 16:17:52] 2025-12-02 21:16:56,521 | INFO     | mean x: 1764681706.6019738
[2025-12-02 16:17:52] 2025-12-02 21:16:56,521 | INFO     | mean y: 3388805.744517544
[2025-12-02 16:17:52] 2025-12-02 21:16:56,521 | INFO     | intersect: -12544538659.970787
[2025-12-02 16:17:52] 2025-12-02 21:16:56,522 | INFO     | chi2: 0.0775513249810642
[2025-12-02 16:17:52] 2025-12-02 21:16:56,522 | INFO     | current memory leak: 7.11 B/s (using 912 data points, chi2=0.08)
[2025-12-02 16:17:52] 2025-12-02 21:16:56,523 | INFO     | could have reported an average CPU frequency of 3744 MHz (35 samples)
[2025-12-02 16:17:52] 2025-12-02 21:16:56,523 | INFO     | ..............................
[2025-12-02 16:17:52] 2025-12-02 21:16:56,523 | INFO     | . Timing measurements:
[2025-12-02 16:17:52] 2025-12-02 21:16:56,523 | INFO     | . get job = 0 s
[2025-12-02 16:17:52] 2025-12-02 21:16:56,523 | INFO     | . initial setup = 7 s
[2025-12-02 16:17:52] 2025-12-02 21:16:56,523 | INFO     | . payload setup = 112 s
[2025-12-02 16:17:52] 2025-12-02 21:16:56,523 | INFO     | . stage-in = 0 s
[2025-12-02 16:17:52] 2025-12-02 21:16:56,523 | INFO     | . payload execution = 58149 s
[2025-12-02 16:17:52] 2025-12-02 21:16:56,523 | INFO     | . stage-out = 4 s
[2025-12-02 16:17:52] 2025-12-02 21:16:56,523 | INFO     | . log creation = 1 s
[2025-12-02 16:17:52] 2025-12-02 21:16:56,523 | INFO     | ..............................
[2025-12-02 16:17:52] 2025-12-02 21:16:56,612 | INFO     | 
[2025-12-02 16:17:52] 2025-12-02 21:16:56,613 | INFO     | job summary report
[2025-12-02 16:17:52] 2025-12-02 21:16:56,613 | INFO     | --------------------------------------------------
[2025-12-02 16:17:52] 2025-12-02 21:16:56,613 | INFO     | PanDA job id: 6897931861
[2025-12-02 16:17:52] 2025-12-02 21:16:56,613 | INFO     | task id: 47538121
[2025-12-02 16:17:52] 2025-12-02 21:16:56,613 | INFO     | errors: (none)
[2025-12-02 16:17:52] 2025-12-02 21:16:56,613 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 16:17:52] 2025-12-02 21:16:56,613 | INFO     | pilot state: finished 
[2025-12-02 16:17:52] 2025-12-02 21:16:56,613 | INFO     | transexitcode: 0
[2025-12-02 16:17:52] 2025-12-02 21:16:56,613 | INFO     | exeerrorcode: 0
[2025-12-02 16:17:52] 2025-12-02 21:16:56,613 | INFO     | exeerrordiag: 
[2025-12-02 16:17:52] 2025-12-02 21:16:56,613 | INFO     | exitcode: 0
[2025-12-02 16:17:52] 2025-12-02 21:16:56,613 | INFO     | exitmsg: OK
[2025-12-02 16:17:52] 2025-12-02 21:16:56,613 | INFO     | cpuconsumptiontime: 124028 s
[2025-12-02 16:17:52] 2025-12-02 21:16:56,613 | INFO     | nevents: 1000
[2025-12-02 16:17:52] 2025-12-02 21:16:56,613 | INFO     | neventsw: 0
[2025-12-02 16:17:52] 2025-12-02 21:16:56,613 | INFO     | pid: 1519018
[2025-12-02 16:17:52] 2025-12-02 21:16:56,613 | INFO     | pgrp: 1519018
[2025-12-02 16:17:52] 2025-12-02 21:16:56,613 | INFO     | corecount: 8
[2025-12-02 16:17:52] 2025-12-02 21:16:56,613 | INFO     | event service: False
[2025-12-02 16:17:52] 2025-12-02 21:16:56,613 | INFO     | sizes: {0: 2284451, 1: 2284451, 12: 2284479, 23: 2284507, 33: 2284535, 39: 2284853, 44: 2285009, 58265: 2355388, 58269: 2364384, 58272: 2364440, 58292: 2364686}
[2025-12-02 16:17:52] 2025-12-02 21:16:56,613 | INFO     | --------------------------------------------------
[2025-12-02 16:17:52] 2025-12-02 21:16:56,613 | INFO     | 
[2025-12-02 16:17:52] 2025-12-02 21:16:56,613 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2025-12-02 16:17:52] 2025-12-02 21:16:56,660 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 16:17:52] 2025-12-02 21:16:56,660 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 16:17:52] 2025-12-02 21:16:56,660 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 16:17:52] 2025-12-02 21:16:56,660 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 16:17:52] 2025-12-02 21:16:56,660 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 16:17:52] 2025-12-02 21:16:56,660 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 16:17:52] 2025-12-02 21:16:56,660 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 16:17:52] 2025-12-02 21:16:56,660 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 16:17:52] 2025-12-02 21:16:56,660 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 16:17:52] 2025-12-02 21:16:56,660 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 16:17:52] 2025-12-02 21:16:56,661 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 16:17:52] 2025-12-02 21:16:56,661 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 16:17:52] 2025-12-02 21:16:56,661 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 16:17:52] 2025-12-02 21:16:56,661 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 16:17:52] 2025-12-02 21:16:56,661 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 16:17:52] 2025-12-02 21:16:56,661 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 16:17:52] 2025-12-02 21:16:56,661 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 16:17:52] 2025-12-02 21:16:56,661 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 16:17:52] 2025-12-02 21:16:56,661 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 16:17:52] 2025-12-02 21:16:56,661 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 16:17:52] 2025-12-02 21:16:56,661 | INFO     | job 6897931861 has completed (purged errors)
[2025-12-02 16:17:52] 2025-12-02 21:16:56,661 | INFO     | overall cleanup function is called
[2025-12-02 16:17:52] 2025-12-02 21:16:57,676 | INFO     | --- collectZombieJob: --- 10, [1519018]
[2025-12-02 16:17:52] 2025-12-02 21:16:57,676 | INFO     | zombie collector waiting for pid 1519018
[2025-12-02 16:17:52] 2025-12-02 21:16:57,676 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 16:17:52] 2025-12-02 21:16:57,676 | INFO     | collected zombie processes
[2025-12-02 16:17:52] 2025-12-02 21:16:57,676 | INFO     | will attempt to kill all subprocesses of pid=1519018
[2025-12-02 16:17:52] 2025-12-02 21:16:58,851 | INFO     | process IDs to be killed: [1519018] (in reverse order)
[2025-12-02 16:17:52] 2025-12-02 21:16:59,045 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 16:17:52] 2025-12-02 21:16:59,045 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 16:17:52] 2025-12-02 21:16:59,125 | INFO     | did not find any defunct processes belonging to 1519018
[2025-12-02 16:17:52] 2025-12-02 21:16:59,150 | INFO     | did not find any defunct processes belonging to 1519018
[2025-12-02 16:17:52] 2025-12-02 21:16:59,151 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 16:17:52] 2025-12-02 21:16:59,152 | INFO     | ready for new job
[2025-12-02 16:17:52] 2025-12-02 21:16:59,152 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 16:17:52] 2025-12-02 21:16:59,154 | INFO     | ***************************************
[2025-12-02 16:17:52] 2025-12-02 21:16:59,154 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 16:17:52] 2025-12-02 21:16:59,154 | INFO     | ***************************************
[2025-12-02 16:17:52] 2025-12-02 21:16:59,154 | INFO     | 
[2025-12-02 16:17:52] 2025-12-02 21:16:59,159 | INFO     | architecture information:
[2025-12-02 16:17:52] 2025-12-02 21:16:59,159 | INFO     | executing command: cat /etc/os-release
[2025-12-02 16:17:52] 2025-12-02 21:16:59,200 | INFO     | cat /etc/os-release:
[2025-12-02 16:17:52] NAME="CentOS Linux"
[2025-12-02 16:17:52] VERSION="7 (Core)"
[2025-12-02 16:17:52] ID="centos"
[2025-12-02 16:17:52] ID_LIKE="rhel fedora"
[2025-12-02 16:17:52] VERSION_ID="7"
[2025-12-02 16:17:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 16:17:52] ANSI_COLOR="0;31"
[2025-12-02 16:17:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 16:17:52] HOME_URL="https://www.centos.org/"
[2025-12-02 16:17:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 16:17:52] 
[2025-12-02 16:17:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 16:17:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 16:17:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 16:17:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 16:17:52] 
[2025-12-02 16:17:52] 2025-12-02 21:16:59,200 | INFO     | ***************************************
[2025-12-02 16:17:52] 2025-12-02 21:16:59,704 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2025-12-02 16:17:52] 2025-12-02 21:16:59,740 | INFO     | sufficient remaining disk space (165500944384 B)
[2025-12-02 16:17:52] 2025-12-02 21:16:59,740 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 16:17:52] 2025-12-02 21:16:59,740 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 16:17:52] 2025-12-02 21:16:59,740 | INFO     | update_server=False
[2025-12-02 16:17:52] 2025-12-02 21:16:59,740 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 16:17:52] 2025-12-02 21:16:59,740 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 16:17:52] 2025-12-02 21:17:00,089 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-02 16:17:52] 2025-12-02 21:17:00,089 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-02 16:17:52] 2025-12-02 21:17:00,089 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 16:17:52] 2025-12-02 21:17:00,089 | INFO     | will abort loop
[2025-12-02 16:17:52] 2025-12-02 21:17:00,451 | INFO     | all data control threads have been joined
[2025-12-02 16:17:52] 2025-12-02 21:17:00,746 | INFO     | [job] retrieve thread has finished
[2025-12-02 16:17:52] 2025-12-02 21:17:00,854 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 16:17:52] 2025-12-02 21:17:01,021 | INFO     | all job control threads have been joined
[2025-12-02 16:17:52] 2025-12-02 21:17:01,095 | INFO     | [job] job monitor thread has finished
[2025-12-02 16:17:52] 2025-12-02 21:17:01,150 | INFO     | all payload control threads have been joined
[2025-12-02 16:17:52] 2025-12-02 21:17:01,371 | INFO     | [payload] validate_post thread has finished
[2025-12-02 16:17:52] 2025-12-02 21:17:01,457 | INFO     | [data] control thread has finished
[2025-12-02 16:17:52] 2025-12-02 21:17:01,502 | INFO     | [data] copytool_in thread has finished
[2025-12-02 16:17:52] 2025-12-02 21:17:01,628 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 16:17:52] 2025-12-02 21:17:01,672 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 16:17:52] 2025-12-02 21:17:01,678 | INFO     | [job] validate thread has finished
[2025-12-02 16:17:52] 2025-12-02 21:17:01,748 | INFO     | [data] copytool_out thread has finished
[2025-12-02 16:17:52] 2025-12-02 21:17:01,821 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 16:17:52] 2025-12-02 21:17:02,027 | INFO     | [job] control thread has finished
[2025-12-02 16:17:52] 2025-12-02 21:17:02,118 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 16:17:52] 2025-12-02 21:17:02,156 | INFO     | [payload] control thread has finished
[2025-12-02 16:17:52] 2025-12-02 21:17:02,206 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 16:17:52] 2025-12-02 21:17:02,315 | INFO     | [payload] failed_post thread has finished
[2025-12-02 16:17:52] 2025-12-02 21:17:02,636 | INFO     | [job] queue monitor thread has finished
[2025-12-02 16:17:52] 2025-12-02 21:17:04,863 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 16:17:52] 2025-12-02 21:17:30,143 | INFO     | PID=1443040 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 16:17:52] 2025-12-02 21:17:30,144 | INFO     | .. there are 57 such processes running
[2025-12-02 16:17:52] 2025-12-02 21:17:30,145 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 16:17:52] 2025-12-02 21:17:30,145 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 16:17:52] 2025-12-02 21:17:30,145 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 16:17:52] 2025-12-02 21:17:45,736 | INFO     | [monitor] cgroup control has ended
[2025-12-02 16:17:52] 2025-12-02 21:17:46,742 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139947101529920)>', '<ExcThread(monitor, started 139946467780352)>']
[2025-12-02 16:17:52] 2025-12-02 21:17:47,253 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 16:17:52] 2025-12-02 21:17:47,253 | INFO     | [monitor] control thread has ended
[2025-12-02 16:17:52] 2025-12-02 21:17:51,768 | INFO     | all workflow threads have been joined
[2025-12-02 16:17:52] 2025-12-02 21:17:51,768 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 16:17:52] 2025-12-02 21:17:51,768 | INFO     | traces error code: 0
[2025-12-02 16:17:52] 2025-12-02 21:17:51,768 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 16:17:52] 2025-12-02 21:17:52,058 [wrapper] ==== pilot stdout END ====
[2025-12-02 16:17:52] 2025-12-02 21:17:52,085 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 16:17:52] 2025-12-02 21:17:52,098 [wrapper] pilotpid: 1443040
[2025-12-02 16:17:52] 2025-12-02 21:17:52,105 [wrapper] Pilot exit status: 0
[2025-12-02 16:17:52] 2025-12-02 21:17:52,154 [wrapper] pandaids: 6897931861
[2025-12-02 16:17:52] 2025-12-02 21:17:52,293 [wrapper] cleanup supervisor_pilot 4152997 1443041
[2025-12-02 16:17:52] 2025-12-02 21:17:52,298 [wrapper] Test setup, not cleaning
[2025-12-02 16:17:52] 2025-12-02 21:17:52,322 [wrapper] apfmon messages muted
[2025-12-02 16:17:52] 2025-12-02 21:17:52,329 [wrapper] ==== wrapper stdout END ====
[2025-12-02 16:17:52] 2025-12-02 21:17:52,359 [wrapper] ==== wrapper stderr END ====
[2025-12-02 16:17:52]  *** Error codes and diagnostics ***
[2025-12-02 16:17:52]     "exeErrorCode": 0,
[2025-12-02 16:17:52]     "exeErrorDiag": "",
[2025-12-02 16:17:52]     "pilotErrorCode": 0,
[2025-12-02 16:17:52]     "pilotErrorDiag": "",
[2025-12-02 16:17:52]  *** Listing of results directory ***
[2025-12-02 16:17:52] total 1079580
[2025-12-02 16:17:52] -rw-r--r--. 1 boincer umatlas    576529 Nov 28 17:41 pilot3.tar.gz
[2025-12-02 16:17:52] -rw-r--r--. 1 boincer umatlas      5112 Nov 28 17:43 queuedata.json
[2025-12-02 16:17:52] -rwx------. 1 boincer umatlas     36292 Nov 28 17:44 runpilot2-wrapper.sh
[2025-12-02 16:17:52] -rw-r--r--. 1 boincer umatlas       100 Dec  2 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 16:17:52] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 00:02 run_atlas
[2025-12-02 16:17:52] -rw-r--r--. 1 boincer umatlas       105 Dec  2 00:02 job.xml
[2025-12-02 16:17:52] -rw-r--r--. 2 boincer umatlas 376241854 Dec  2 00:02 EVNT.47528880._000065.pool.root.1
[2025-12-02 16:17:52] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 00:02 start_atlas.sh
[2025-12-02 16:17:52] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 00:02 shared
[2025-12-02 16:17:52] -rw-r--r--. 2 boincer umatlas    590127 Dec  2 00:02 input.tar.gz
[2025-12-02 16:17:52] -rw-r--r--. 1 boincer umatlas         0 Dec  2 00:02 boinc_lockfile
[2025-12-02 16:17:52] -rw-r--r--. 1 boincer umatlas      2879 Dec  2 00:02 pandaJob.out
[2025-12-02 16:17:52] -rw-------. 1 boincer umatlas        57 Dec  2 00:02 setup.sh.local
[2025-12-02 16:17:52] -rw-------. 1 boincer umatlas    992001 Dec  2 00:03 agis_schedconf.cvmfs.json
[2025-12-02 16:17:52] drwx------. 5 boincer umatlas      4096 Dec  2 00:04 pilot3
[2025-12-02 16:17:52] -rw-r--r--. 1 boincer umatlas       533 Dec  2 16:07 boinc_task_state.xml
[2025-12-02 16:17:52] -rw-r--r--. 1 boincer umatlas      7177 Dec  2 16:11 init_data.xml
[2025-12-02 16:17:52] -rw-------. 1 boincer umatlas 707000369 Dec  2 16:15 HITS.47538121._000649.pool.root.1
[2025-12-02 16:17:52] -rw-------. 1 boincer umatlas      1070 Dec  2 16:16 memory_monitor_summary.json
[2025-12-02 16:17:52] -rw-------. 1 boincer umatlas   1516240 Dec  2 16:16 agis_ddmendpoints.agis.ALL.json
[2025-12-02 16:17:52] -rw-------. 1 boincer umatlas   2156661 Dec  2 16:16 log.47538121._000649.job.log.tgz.1
[2025-12-02 16:17:52] -rw-------. 1 boincer umatlas     27741 Dec  2 16:16 heartbeat.json
[2025-12-02 16:17:52] -rw-------. 1 boincer umatlas        95 Dec  2 16:17 pilot_heartbeat.json
[2025-12-02 16:17:52] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 16:17 boinc_mmap_file
[2025-12-02 16:17:52] -rw-r--r--. 1 boincer umatlas        29 Dec  2 16:17 wrapper_checkpoint.txt
[2025-12-02 16:17:52] -rw-------. 1 boincer umatlas      5012 Dec  2 16:17 pilotlog.txt
[2025-12-02 16:17:52] -rw-------. 1 boincer umatlas   6987744 Dec  2 16:17 log.47538121._000649.job.log.1
[2025-12-02 16:17:52] -rw-------. 1 boincer umatlas       353 Dec  2 16:17 output.list
[2025-12-02 16:17:52] -rw-r--r--. 1 boincer umatlas       620 Dec  2 16:17 runtime_log
[2025-12-02 16:17:52] -rw-------. 1 boincer umatlas   9185280 Dec  2 16:17 result.tar.gz
[2025-12-02 16:17:52] -rw-r--r--. 1 boincer umatlas      9361 Dec  2 16:17 runtime_log.err
[2025-12-02 16:17:52] -rw-------. 1 boincer umatlas       666 Dec  2 16:17 o0VMDmHNMj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJXLKDmtHkBsn.diag
[2025-12-02 16:17:52] -rw-r--r--. 1 boincer umatlas     21202 Dec  2 16:17 stderr.txt
[2025-12-02 16:17:53] HITS file was successfully produced:
[2025-12-02 16:17:53] -rw-------. 1 boincer umatlas 707000369 Dec  2 16:15 shared/HITS.pool.root.1
[2025-12-02 16:17:53]  *** Contents of shared directory: ***
[2025-12-02 16:17:53] total 1067432
[2025-12-02 16:17:53] -rw-r--r--. 2 boincer umatlas 376241854 Dec  2 00:02 ATLAS.root_0
[2025-12-02 16:17:53] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 00:02 start_atlas.sh
[2025-12-02 16:17:53] -rw-r--r--. 2 boincer umatlas    590127 Dec  2 00:02 input.tar.gz
[2025-12-02 16:17:53] -rw-------. 1 boincer umatlas 707000369 Dec  2 16:15 HITS.pool.root.1
[2025-12-02 16:17:53] -rw-------. 1 boincer umatlas   9185280 Dec  2 16:17 result.tar.gz
16:17:54 (1415988): run_atlas exited; CPU time 124865.422808
16:17:54 (1415988): called boinc_finish(0)

</stderr_txt>
]]>

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