Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:46:39 (1603088): wrapper (7.7.26015): starting
05:46:39 (1603088): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 05:46:39] Arguments: --nthreads 8
[2025-12-02 05:46:39] Threads: 8
[2025-12-02 05:46:39] Checking for CVMFS
[2025-12-02 05:46:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 05:46:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 05:46:40] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 05:46:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 05:46:41] 2.13.3.0 7314 38527 283760 153552 0 408 25127153 40960001 51395 16776704 0 577706732 99.750 368131630 48760 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 05:46:41] CVMFS is ok
[2025-12-02 05:46:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 05:46:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 05:46:41] Further information can be found at the LHC@home message board.
[2025-12-02 05:46:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 05:46:41] Checking for apptainer binary...
[2025-12-02 05:46:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 05:46:41] Running /usr/bin/apptainer --version
[2025-12-02 05:46:41] apptainer version 1.4.4-1.el9
[2025-12-02 05:46:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 05:46:42] c8-16-1.aglt2.org
[2025-12-02 05:46:42] apptainer works
[2025-12-02 05:46:42] Set ATHENA_PROC_NUMBER=8
[2025-12-02 05:46:42] Set ATHENA_CORE_NUMBER=8
[2025-12-02 05:46:42] Starting ATLAS job with PandaID=6897987120
[2025-12-02 05:46:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:09:29 (3518848): wrapper (7.7.26015): starting
09:09:29 (3518848): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 09:09:29] Arguments: --nthreads 8
[2025-12-02 09:09:29] Threads: 8
[2025-12-02 09:09:29] This job has been restarted, cleaning up previous attempt
[2025-12-02 09:09:29] Checking for CVMFS
[2025-12-02 09:09:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 09:09:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 09:09:30] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 09:09:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 09:09:31] 2.13.3.0 7314 38730 302080 153557 2 950 32517378 40960000 49776 16776704 0 580762062 99.750 370618053 48775 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 09:09:31] CVMFS is ok
[2025-12-02 09:09:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 09:09:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 09:09:31] Further information can be found at the LHC@home message board.
[2025-12-02 09:09:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 09:09:31] Checking for apptainer binary...
[2025-12-02 09:09:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 09:09:31] Running /usr/bin/apptainer --version
[2025-12-02 09:09:31] apptainer version 1.4.4-1.el9
[2025-12-02 09:09:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 09:09:31] c8-16-1.aglt2.org
[2025-12-02 09:09:31] apptainer works
[2025-12-02 09:09:31] Set ATHENA_PROC_NUMBER=8
[2025-12-02 09:09:31] Set ATHENA_CORE_NUMBER=8
[2025-12-02 09:09:32] Starting ATLAS job with PandaID=6897987120
[2025-12-02 09:09:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 21:03:11]  *** The last 200 lines of the pilot log: ***
[2025-12-02 21:03:11] 2025-12-03 02:01:55,356 | INFO     | monitor loop #2206: job 0:6897987120 is in state 'finished'
[2025-12-02 21:03:11] 2025-12-03 02:01:55,362 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 21:03:11] 2025-12-03 02:01:57,211 | INFO     | time since job start (42672s) is within the limit (172800.0s)
[2025-12-02 21:03:11] 2025-12-03 02:01:57,870 | INFO     | monitor loop #2207: job 0:6897987120 is in state 'finished'
[2025-12-02 21:03:11] 2025-12-03 02:01:57,870 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 21:03:11] 2025-12-03 02:01:59,225 | INFO     | time since job start (42674s) is within the limit (172800.0s)
[2025-12-02 21:03:11] 2025-12-03 02:02:00,377 | INFO     | monitor loop #2208: job 0:6897987120 is in state 'finished'
[2025-12-02 21:03:11] 2025-12-03 02:02:00,380 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 21:03:11] 2025-12-03 02:02:01,241 | INFO     | time since job start (42676s) is within the limit (172800.0s)
[2025-12-02 21:03:11] 2025-12-03 02:02:02,897 | INFO     | monitor loop #2209: job 0:6897987120 is in state 'finished'
[2025-12-02 21:03:11] 2025-12-03 02:02:02,897 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 21:03:11] 2025-12-03 02:02:03,248 | INFO     | time since job start (42678s) is within the limit (172800.0s)
[2025-12-02 21:03:11] 2025-12-03 02:02:05,257 | INFO     | time since job start (42680s) is within the limit (172800.0s)
[2025-12-02 21:03:11] 2025-12-03 02:02:05,402 | INFO     | monitor loop #2210: job 0:6897987120 is in state 'finished'
[2025-12-02 21:03:11] 2025-12-03 02:02:05,406 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 21:03:11] 2025-12-03 02:02:05,975 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-02 21:03:11] 2025-12-03 02:02:05,983 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9885234375
[2025-12-02 21:03:11] 2025-12-03 02:02:06,003 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6897987120/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 21:03:11] 2025-12-03 02:02:06,003 | INFO     | extracted standard info from prmon json
[2025-12-02 21:03:11] 2025-12-03 02:02:06,003 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 21:03:11] 2025-12-03 02:02:06,003 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 21:03:11] 2025-12-03 02:02:06,010 | INFO     | fitting pss+swap vs Time
[2025-12-02 21:03:11] 2025-12-03 02:02:06,010 | INFO     | sum of square deviations: 104537041189.36705
[2025-12-02 21:03:11] 2025-12-03 02:02:06,016 | INFO     | sum of deviations: 84313063200.6411
[2025-12-02 21:03:11] 2025-12-03 02:02:06,016 | INFO     | mean x: 1764706070.5301723
[2025-12-02 21:03:11] 2025-12-03 02:02:06,016 | INFO     | mean y: 3283943.231321839
[2025-12-02 21:03:11] 2025-12-03 02:02:06,016 | INFO     | intersect: -1420018005.6505003
[2025-12-02 21:03:11] 2025-12-03 02:02:06,016 | INFO     | chi2: 23.5258611660107
[2025-12-02 21:03:11] 2025-12-03 02:02:06,017 | INFO     | sum of square deviations: 102300481353.60925
[2025-12-02 21:03:11] 2025-12-03 02:02:06,023 | INFO     | sum of deviations: 350601749043.0497
[2025-12-02 21:03:11] 2025-12-03 02:02:06,023 | INFO     | mean x: 1764705918.0448625
[2025-12-02 21:03:11] 2025-12-03 02:02:06,023 | INFO     | mean y: 3302093.1273516645
[2025-12-02 21:03:11] 2025-12-03 02:02:06,023 | INFO     | intersect: -6044655582.404357
[2025-12-02 21:03:11] 2025-12-03 02:02:06,023 | INFO     | chi2: 19.952777704580733
[2025-12-02 21:03:11] 2025-12-03 02:02:06,023 | INFO     | current chi2=19.952777704580733 (change=15.187896571421694 %)
[2025-12-02 21:03:11] 2025-12-03 02:02:06,023 | INFO     | right removable region: 690
[2025-12-02 21:03:11] 2025-12-03 02:02:06,024 | INFO     | sum of square deviations: 102299619423.60922
[2025-12-02 21:03:11] 2025-12-03 02:02:06,030 | INFO     | sum of deviations: -229637852868.5452
[2025-12-02 21:03:11] 2025-12-03 02:02:06,030 | INFO     | mean x: 1764706223.0448625
[2025-12-02 21:03:11] 2025-12-03 02:02:06,030 | INFO     | mean y: 3305337.1143270624
[2025-12-02 21:03:11] 2025-12-03 02:02:06,030 | INFO     | intersect: 3964643123.9708257
[2025-12-02 21:03:11] 2025-12-03 02:02:06,031 | INFO     | chi2: 19.680200407319305
[2025-12-02 21:03:11] 2025-12-03 02:02:06,031 | INFO     | current chi2=19.680200407319305 (change=16.346524922315975 %)
[2025-12-02 21:03:11] 2025-12-03 02:02:06,031 | INFO     | left removable region: 10
[2025-12-02 21:03:11] 2025-12-03 02:02:06,031 | INFO     | sum of square deviations: 97491381674.75186
[2025-12-02 21:03:11] 2025-12-03 02:02:06,037 | INFO     | sum of deviations: -35832558198.33205
[2025-12-02 21:03:11] 2025-12-03 02:02:06,037 | INFO     | mean x: 1764706192.5691175
[2025-12-02 21:03:11] 2025-12-03 02:02:06,037 | INFO     | mean y: 3336242.879411765
[2025-12-02 21:03:11] 2025-12-03 02:02:06,037 | INFO     | intersect: 651946779.1332648
[2025-12-02 21:03:11] 2025-12-03 02:02:06,038 | INFO     | chi2: 14.57529047528756
[2025-12-02 21:03:11] 2025-12-03 02:02:06,038 | INFO     | current memory leak: -0.37 B/s (using 680 data points, chi2=14.58)
[2025-12-02 21:03:11] 2025-12-03 02:02:06,038 | INFO     | could have reported an average CPU frequency of 3799 MHz (26 samples)
[2025-12-02 21:03:11] 2025-12-03 02:02:06,039 | INFO     | ..............................
[2025-12-02 21:03:11] 2025-12-03 02:02:06,039 | INFO     | . Timing measurements:
[2025-12-02 21:03:11] 2025-12-03 02:02:06,039 | INFO     | . get job = 0 s
[2025-12-02 21:03:11] 2025-12-03 02:02:06,039 | INFO     | . initial setup = 2 s
[2025-12-02 21:03:11] 2025-12-03 02:02:06,039 | INFO     | . payload setup = 94 s
[2025-12-02 21:03:11] 2025-12-03 02:02:06,039 | INFO     | . stage-in = 0 s
[2025-12-02 21:03:11] 2025-12-03 02:02:06,039 | INFO     | . payload execution = 42445 s
[2025-12-02 21:03:11] 2025-12-03 02:02:06,039 | INFO     | . stage-out = 7 s
[2025-12-02 21:03:11] 2025-12-03 02:02:06,039 | INFO     | . log creation = 1 s
[2025-12-02 21:03:11] 2025-12-03 02:02:06,039 | INFO     | ..............................
[2025-12-02 21:03:11] 2025-12-03 02:02:06,203 | INFO     | 
[2025-12-02 21:03:11] 2025-12-03 02:02:06,203 | INFO     | job summary report
[2025-12-02 21:03:11] 2025-12-03 02:02:06,203 | INFO     | --------------------------------------------------
[2025-12-02 21:03:11] 2025-12-03 02:02:06,203 | INFO     | PanDA job id: 6897987120
[2025-12-02 21:03:11] 2025-12-03 02:02:06,203 | INFO     | task id: 47538121
[2025-12-02 21:03:11] 2025-12-03 02:02:06,203 | INFO     | errors: (none)
[2025-12-02 21:03:11] 2025-12-03 02:02:06,203 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 21:03:11] 2025-12-03 02:02:06,203 | INFO     | pilot state: finished 
[2025-12-02 21:03:11] 2025-12-03 02:02:06,203 | INFO     | transexitcode: 0
[2025-12-02 21:03:11] 2025-12-03 02:02:06,203 | INFO     | exeerrorcode: 0
[2025-12-02 21:03:11] 2025-12-03 02:02:06,203 | INFO     | exeerrordiag: 
[2025-12-02 21:03:11] 2025-12-03 02:02:06,203 | INFO     | exitcode: 0
[2025-12-02 21:03:11] 2025-12-03 02:02:06,203 | INFO     | exitmsg: OK
[2025-12-02 21:03:11] 2025-12-03 02:02:06,203 | INFO     | cpuconsumptiontime: 121186 s
[2025-12-02 21:03:11] 2025-12-03 02:02:06,203 | INFO     | nevents: 1000
[2025-12-02 21:03:11] 2025-12-03 02:02:06,203 | INFO     | neventsw: 0
[2025-12-02 21:03:11] 2025-12-03 02:02:06,203 | INFO     | pid: 3640280
[2025-12-02 21:03:11] 2025-12-03 02:02:06,204 | INFO     | pgrp: 3640280
[2025-12-02 21:03:11] 2025-12-03 02:02:06,204 | INFO     | corecount: 8
[2025-12-02 21:03:11] 2025-12-03 02:02:06,204 | INFO     | event service: False
[2025-12-02 21:03:11] 2025-12-03 02:02:06,204 | INFO     | sizes: {0: 2284280, 1: 2284479, 12: 2284479, 23: 2284507, 33: 2284535, 35: 2284853, 44: 2285009, 42544: 2346006, 42552: 2355000, 42554: 2355056, 42598: 2355302}
[2025-12-02 21:03:11] 2025-12-03 02:02:06,204 | INFO     | --------------------------------------------------
[2025-12-02 21:03:11] 2025-12-03 02:02:06,204 | INFO     | 
[2025-12-02 21:03:11] 2025-12-03 02:02:06,204 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-12-02 21:03:11] 2025-12-03 02:02:06,424 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 21:03:11] 2025-12-03 02:02:06,424 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 21:03:11] 2025-12-03 02:02:06,424 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 21:03:11] 2025-12-03 02:02:06,424 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 21:03:11] 2025-12-03 02:02:06,424 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 21:03:11] 2025-12-03 02:02:06,424 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 21:03:11] 2025-12-03 02:02:06,424 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 21:03:11] 2025-12-03 02:02:06,424 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 21:03:11] 2025-12-03 02:02:06,424 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 21:03:11] 2025-12-03 02:02:06,424 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 21:03:11] 2025-12-03 02:02:06,424 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 21:03:11] 2025-12-03 02:02:06,424 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 21:03:11] 2025-12-03 02:02:06,424 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 21:03:11] 2025-12-03 02:02:06,424 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 21:03:11] 2025-12-03 02:02:06,424 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 21:03:11] 2025-12-03 02:02:06,424 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 21:03:11] 2025-12-03 02:02:06,424 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 21:03:11] 2025-12-03 02:02:06,424 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 21:03:11] 2025-12-03 02:02:06,425 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 21:03:11] 2025-12-03 02:02:06,425 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 21:03:11] 2025-12-03 02:02:06,425 | INFO     | job 6897987120 has completed (purged errors)
[2025-12-02 21:03:11] 2025-12-03 02:02:06,425 | INFO     | overall cleanup function is called
[2025-12-02 21:03:11] 2025-12-03 02:02:07,482 | INFO     | --- collectZombieJob: --- 10, [3640280]
[2025-12-02 21:03:11] 2025-12-03 02:02:07,482 | INFO     | zombie collector waiting for pid 3640280
[2025-12-02 21:03:11] 2025-12-03 02:02:07,482 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 21:03:11] 2025-12-03 02:02:07,482 | INFO     | collected zombie processes
[2025-12-02 21:03:11] 2025-12-03 02:02:07,482 | INFO     | will attempt to kill all subprocesses of pid=3640280
[2025-12-02 21:03:11] 2025-12-03 02:02:09,215 | INFO     | process IDs to be killed: [3640280] (in reverse order)
[2025-12-02 21:03:11] 2025-12-03 02:02:09,654 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 21:03:11] 2025-12-03 02:02:09,654 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 21:03:11] 2025-12-03 02:02:09,704 | INFO     | did not find any defunct processes belonging to 3640280
[2025-12-02 21:03:11] 2025-12-03 02:02:09,737 | INFO     | did not find any defunct processes belonging to 3640280
[2025-12-02 21:03:11] 2025-12-03 02:02:09,751 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 21:03:11] 2025-12-03 02:02:09,752 | INFO     | ready for new job
[2025-12-02 21:03:11] 2025-12-03 02:02:09,752 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 21:03:11] 2025-12-03 02:02:09,760 | INFO     | ***************************************
[2025-12-02 21:03:11] 2025-12-03 02:02:09,761 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 21:03:11] 2025-12-03 02:02:09,761 | INFO     | ***************************************
[2025-12-02 21:03:11] 2025-12-03 02:02:09,761 | INFO     | 
[2025-12-02 21:03:11] 2025-12-03 02:02:09,773 | INFO     | architecture information:
[2025-12-02 21:03:11] 2025-12-03 02:02:09,778 | INFO     | executing command: cat /etc/os-release
[2025-12-02 21:03:11] 2025-12-03 02:02:09,806 | INFO     | cat /etc/os-release:
[2025-12-02 21:03:11] NAME="CentOS Linux"
[2025-12-02 21:03:11] VERSION="7 (Core)"
[2025-12-02 21:03:11] ID="centos"
[2025-12-02 21:03:11] ID_LIKE="rhel fedora"
[2025-12-02 21:03:11] VERSION_ID="7"
[2025-12-02 21:03:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 21:03:11] ANSI_COLOR="0;31"
[2025-12-02 21:03:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 21:03:11] HOME_URL="https://www.centos.org/"
[2025-12-02 21:03:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 21:03:11] 
[2025-12-02 21:03:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 21:03:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 21:03:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 21:03:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 21:03:11] 
[2025-12-02 21:03:11] 2025-12-03 02:02:09,806 | INFO     | ***************************************
[2025-12-02 21:03:11] 2025-12-03 02:02:10,310 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-12-02 21:03:11] 2025-12-03 02:02:10,413 | INFO     | sufficient remaining disk space (164700880896 B)
[2025-12-02 21:03:11] 2025-12-03 02:02:10,413 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 21:03:11] 2025-12-03 02:02:10,417 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 21:03:11] 2025-12-03 02:02:10,417 | INFO     | update_server=False
[2025-12-02 21:03:11] 2025-12-03 02:02:10,417 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 21:03:11] 2025-12-03 02:02:10,453 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-02 21:03:11] 2025-12-03 02:02:10,453 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-02 21:03:11] 2025-12-03 02:02:10,453 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 21:03:11] 2025-12-03 02:02:10,454 | INFO     | will abort loop
[2025-12-02 21:03:11] 2025-12-03 02:02:10,491 | INFO     | all payload control threads have been joined
[2025-12-02 21:03:11] 2025-12-03 02:02:10,801 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 21:03:11] 2025-12-03 02:02:11,167 | INFO     | all job control threads have been joined
[2025-12-02 21:03:11] 2025-12-03 02:02:11,222 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 21:03:11] 2025-12-03 02:02:11,384 | INFO     | all data control threads have been joined
[2025-12-02 21:03:11] 2025-12-03 02:02:11,423 | INFO     | [job] retrieve thread has finished
[2025-12-02 21:03:11] 2025-12-03 02:02:11,458 | INFO     | [job] job monitor thread has finished
[2025-12-02 21:03:11] 2025-12-03 02:02:11,498 | INFO     | [payload] control thread has finished
[2025-12-02 21:03:11] 2025-12-03 02:02:11,833 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 21:03:11] 2025-12-03 02:02:11,848 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 21:03:11] 2025-12-03 02:02:11,870 | INFO     | [job] validate thread has finished
[2025-12-02 21:03:11] 2025-12-03 02:02:12,106 | INFO     | [data] copytool_in thread has finished
[2025-12-02 21:03:11] 2025-12-03 02:02:12,173 | INFO     | [job] control thread has finished
[2025-12-02 21:03:11] 2025-12-03 02:02:12,227 | INFO     | [job] queue monitor thread has finished
[2025-12-02 21:03:11] 2025-12-03 02:02:12,314 | INFO     | [payload] failed_post thread has finished
[2025-12-02 21:03:11] 2025-12-03 02:02:12,390 | INFO     | [data] control thread has finished
[2025-12-02 21:03:11] 2025-12-03 02:02:12,708 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 21:03:11] 2025-12-03 02:02:12,708 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 21:03:11] 2025-12-03 02:02:12,808 | INFO     | [data] copytool_out thread has finished
[2025-12-02 21:03:11] 2025-12-03 02:02:12,858 | INFO     | [payload] validate_post thread has finished
[2025-12-02 21:03:11] 2025-12-03 02:02:13,485 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 21:03:11] 2025-12-03 02:02:17,493 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 21:03:11] 2025-12-03 02:02:41,207 | INFO     | PID=3551758 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 21:03:11] 2025-12-03 02:02:41,222 | INFO     | .. there are 84 such processes running
[2025-12-02 21:03:11] 2025-12-03 02:02:41,222 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 21:03:11] 2025-12-03 02:02:41,222 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 21:03:11] 2025-12-03 02:02:41,222 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 21:03:11] 2025-12-03 02:03:01,920 | INFO     | [monitor] cgroup control has ended
[2025-12-02 21:03:11] 2025-12-03 02:03:03,076 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139912069666624)>', '<ExcThread(monitor, started 139911428560640)>']
[2025-12-02 21:03:11] 2025-12-03 02:03:03,406 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 21:03:11] 2025-12-03 02:03:03,406 | INFO     | [monitor] control thread has ended
[2025-12-02 21:03:11] 2025-12-03 02:03:08,102 | INFO     | all workflow threads have been joined
[2025-12-02 21:03:11] 2025-12-03 02:03:08,102 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 21:03:11] 2025-12-03 02:03:08,102 | INFO     | traces error code: 0
[2025-12-02 21:03:11] 2025-12-03 02:03:08,102 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 21:03:11] 2025-12-03 02:03:09,448 [wrapper] ==== pilot stdout END ====
[2025-12-02 21:03:11] 2025-12-03 02:03:09,616 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 21:03:11] 2025-12-03 02:03:09,680 [wrapper] pilotpid: 3551758
[2025-12-02 21:03:11] 2025-12-03 02:03:09,689 [wrapper] Pilot exit status: 0
[2025-12-02 21:03:11] 2025-12-03 02:03:09,824 [wrapper] pandaids: 6897987120 6897987120
[2025-12-02 21:03:11] 2025-12-03 02:03:10,230 [wrapper] cleanup supervisor_pilot 3266434 3551759
[2025-12-02 21:03:11] 2025-12-03 02:03:10,273 [wrapper] Test setup, not cleaning
[2025-12-02 21:03:11] 2025-12-03 02:03:10,316 [wrapper] apfmon messages muted
[2025-12-02 21:03:11] 2025-12-03 02:03:10,367 [wrapper] ==== wrapper stdout END ====
[2025-12-02 21:03:11] 2025-12-03 02:03:10,408 [wrapper] ==== wrapper stderr END ====
[2025-12-02 21:03:11]  *** Error codes and diagnostics ***
[2025-12-02 21:03:11]     "exeErrorCode": 0,
[2025-12-02 21:03:11]     "exeErrorDiag": "",
[2025-12-02 21:03:11]     "pilotErrorCode": 0,
[2025-12-02 21:03:11]     "pilotErrorDiag": "",
[2025-12-02 21:03:11]  *** Listing of results directory ***
[2025-12-02 21:03:11] total 1440560
[2025-12-02 21:03:11] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-02 21:03:11] -rw-r--r--. 1 boincer umatlas    576529 Nov 28 17:41 pilot3.tar.gz
[2025-12-02 21:03:11] -rw-r--r--. 1 boincer umatlas      5112 Nov 28 17:43 queuedata.json
[2025-12-02 21:03:11] -rwx------. 1 boincer umatlas     36292 Nov 28 17:44 runpilot2-wrapper.sh
[2025-12-02 21:03:11] -rw-r--r--. 1 boincer umatlas       100 Dec  2 05:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 21:03:11] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 05:46 run_atlas
[2025-12-02 21:03:11] -rw-r--r--. 1 boincer umatlas       105 Dec  2 05:46 job.xml
[2025-12-02 21:03:11] -rw-r--r--. 3 boincer umatlas 375332746 Dec  2 05:46 EVNT.47528880._000094.pool.root.1
[2025-12-02 21:03:11] -rw-r--r--. 3 boincer umatlas 375332746 Dec  2 05:46 ATLAS.root_0
[2025-12-02 21:03:11] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 05:46 start_atlas.sh
[2025-12-02 21:03:11] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 05:46 shared
[2025-12-02 21:03:11] -rw-r--r--. 2 boincer umatlas    590127 Dec  2 05:46 input.tar.gz
[2025-12-02 21:03:11] -rw-r--r--. 1 boincer umatlas         0 Dec  2 05:46 boinc_lockfile
[2025-12-02 21:03:11] -rw-r--r--. 1 boincer umatlas      2880 Dec  2 09:09 pandaJob.out
[2025-12-02 21:03:11] -rw-------. 1 boincer umatlas        57 Dec  2 09:09 setup.sh.local
[2025-12-02 21:03:11] -rw-------. 1 boincer umatlas    987484 Dec  2 09:10 agis_schedconf.cvmfs.json
[2025-12-02 21:03:11] -rw-r--r--. 1 boincer umatlas       533 Dec  2 20:33 boinc_task_state.xml
[2025-12-02 21:03:11] -rw-r--r--. 1 boincer umatlas      7175 Dec  2 20:56 init_data.xml
[2025-12-02 21:03:11] -rw-------. 1 boincer umatlas 706802930 Dec  2 21:00 HITS.47538121._000934.pool.root.1
[2025-12-02 21:03:11] -rw-------. 1 boincer umatlas      1065 Dec  2 21:01 memory_monitor_summary.json
[2025-12-02 21:03:11] -rw-------. 1 boincer umatlas   1516240 Dec  2 21:01 agis_ddmendpoints.agis.ALL.json
[2025-12-02 21:03:11] -rw-------. 1 boincer umatlas   1943695 Dec  2 21:01 log.47538121._000934.job.log.tgz.1
[2025-12-02 21:03:11] -rw-------. 1 boincer umatlas        96 Dec  2 21:01 pilot_heartbeat.json
[2025-12-02 21:03:11] -rw-------. 1 boincer umatlas     26353 Dec  2 21:02 heartbeat.json
[2025-12-02 21:03:11] -rw-------. 1 boincer umatlas      5011 Dec  2 21:03 pilotlog.txt
[2025-12-02 21:03:11] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 21:03 boinc_mmap_file
[2025-12-02 21:03:11] -rw-r--r--. 1 boincer umatlas        29 Dec  2 21:03 wrapper_checkpoint.txt
[2025-12-02 21:03:11] -rw-------. 1 boincer umatlas   4909056 Dec  2 21:03 log.47538121._000934.job.log.1
[2025-12-02 21:03:11] -rw-------. 1 boincer umatlas       353 Dec  2 21:03 output.list
[2025-12-02 21:03:11] -rw-r--r--. 1 boincer umatlas       620 Dec  2 21:03 runtime_log
[2025-12-02 21:03:11] -rw-------. 1 boincer umatlas   6891520 Dec  2 21:03 result.tar.gz
[2025-12-02 21:03:11] -rw-r--r--. 1 boincer umatlas      9423 Dec  2 21:03 runtime_log.err
[2025-12-02 21:03:11] -rw-------. 1 boincer umatlas       789 Dec  2 21:03 GMlNDmRNMj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIZLKDm7fNSen.diag
[2025-12-02 21:03:11] -rw-r--r--. 1 boincer umatlas     23966 Dec  2 21:03 stderr.txt
[2025-12-02 21:03:11] HITS file was successfully produced:
[2025-12-02 21:03:11] -rw-------. 1 boincer umatlas 706802930 Dec  2 21:00 shared/HITS.pool.root.1
[2025-12-02 21:03:11]  *** Contents of shared directory: ***
[2025-12-02 21:03:11] total 1064112
[2025-12-02 21:03:11] -rw-r--r--. 3 boincer umatlas 375332746 Dec  2 05:46 ATLAS.root_0
[2025-12-02 21:03:11] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 05:46 start_atlas.sh
[2025-12-02 21:03:11] -rw-r--r--. 2 boincer umatlas    590127 Dec  2 05:46 input.tar.gz
[2025-12-02 21:03:11] -rw-------. 1 boincer umatlas 706802930 Dec  2 21:00 HITS.pool.root.1
[2025-12-02 21:03:11] -rw-------. 1 boincer umatlas   6891520 Dec  2 21:03 result.tar.gz
21:03:33 (3518848): run_atlas exited; CPU time 122124.246711
21:03:33 (3518848): called boinc_finish(0)

</stderr_txt>
]]>

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