Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:16 (1413257): wrapper (7.7.26015): starting
00:02:16 (1413257): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 00:02:16] Arguments: --nthreads 8
[2025-12-02 00:02:16] Threads: 8
[2025-12-02 00:02:16] Checking for CVMFS
[2025-12-02 00:02:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 00:02:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 00:02:17] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 00:02:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 00:02:18] 2.13.2.0 1657905 38452 237060 153544 1 513 40602173 40960000 32356 16776704 0 446106441 99.694 351193735 48315 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 00:02:18] CVMFS is ok
[2025-12-02 00:02:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 00:02:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 00:02:18] Further information can be found at the LHC@home message board.
[2025-12-02 00:02:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 00:02:18] Checking for apptainer binary...
[2025-12-02 00:02:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 00:02:18] Running /usr/bin/apptainer --version
[2025-12-02 00:02:18] apptainer version 1.4.4-1.el9
[2025-12-02 00:02:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 00:02:19] c-208-39.aglt2.org
[2025-12-02 00:02:19] apptainer works
[2025-12-02 00:02:19] Set ATHENA_PROC_NUMBER=8
[2025-12-02 00:02:19] Set ATHENA_CORE_NUMBER=8
[2025-12-02 00:02:19] Starting ATLAS job with PandaID=6900275230
[2025-12-02 00:02:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 07:45:31]  *** The last 200 lines of the pilot log: ***
[2025-12-02 07:45:31] 2025-12-02 11:42:55,863 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3766.7397343750004
[2025-12-02 07:45:31] 2025-12-02 11:42:55,924 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6900275230/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 07:45:31] 2025-12-02 11:42:55,924 | INFO     | extracted standard info from prmon json
[2025-12-02 07:45:31] 2025-12-02 11:42:55,924 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 07:45:31] 2025-12-02 11:42:55,924 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 07:45:31] 2025-12-02 11:42:55,925 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-02 07:45:31] 2025-12-02 11:42:55,925 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-02 07:45:31] 2025-12-02 11:42:55,944 | INFO     | fitting pss+swap vs Time
[2025-12-02 07:45:31] 2025-12-02 11:42:55,945 | INFO     | sum of square deviations: 18252537559.88179
[2025-12-02 07:45:31] 2025-12-02 11:42:55,947 | INFO     | sum of deviations: 122132423995.39348
[2025-12-02 07:45:31] 2025-12-02 11:42:55,947 | INFO     | mean x: 1764663841.3290489
[2025-12-02 07:45:31] 2025-12-02 11:42:55,947 | INFO     | mean y: 2537067.035989717
[2025-12-02 07:45:31] 2025-12-02 11:42:55,947 | INFO     | intersect: -11805282627.703209
[2025-12-02 07:45:31] 2025-12-02 11:42:55,947 | INFO     | chi2: 5.1894250643119415
[2025-12-02 07:45:31] 2025-12-02 11:42:55,947 | INFO     | sum of square deviations: 17557754269.333363
[2025-12-02 07:45:31] 2025-12-02 11:42:55,957 | INFO     | sum of deviations: 172676335873.83325
[2025-12-02 07:45:31] 2025-12-02 11:42:55,957 | INFO     | mean x: 1764663688.8333333
[2025-12-02 07:45:31] 2025-12-02 11:42:55,958 | INFO     | mean y: 2548071.9036458335
[2025-12-02 07:45:31] 2025-12-02 11:42:55,958 | INFO     | intersect: -17352499456.558647
[2025-12-02 07:45:31] 2025-12-02 11:42:55,958 | INFO     | chi2: 3.691906511947949
[2025-12-02 07:45:31] 2025-12-02 11:42:55,958 | INFO     | current chi2=3.691906511947949 (change=28.857118732912014 %)
[2025-12-02 07:45:31] 2025-12-02 11:42:55,958 | INFO     | sum of square deviations: 16880737581.430004
[2025-12-02 07:45:31] 2025-12-02 11:42:55,967 | INFO     | sum of deviations: 169830594241.93924
[2025-12-02 07:45:31] 2025-12-02 11:42:55,967 | INFO     | mean x: 1764663536.3271768
[2025-12-02 07:45:31] 2025-12-02 11:42:55,967 | INFO     | mean y: 2547430.8311345647
[2025-12-02 07:45:31] 2025-12-02 11:42:55,967 | INFO     | intersect: -17751052230.667698
[2025-12-02 07:45:31] 2025-12-02 11:42:55,968 | INFO     | chi2: 3.6929788606674006
[2025-12-02 07:45:31] 2025-12-02 11:42:55,968 | INFO     | current chi2=3.6929788606674006 (change=-0.029045933746732967 %)
[2025-12-02 07:45:31] 2025-12-02 11:42:55,968 | INFO     | right removable region: 378
[2025-12-02 07:45:31] 2025-12-02 11:42:55,968 | INFO     | sum of square deviations: 17557676189.333378
[2025-12-02 07:45:31] 2025-12-02 11:42:55,970 | INFO     | sum of deviations: 6996104990.33334
[2025-12-02 07:45:31] 2025-12-02 11:42:55,970 | INFO     | mean x: 1764663993.8333333
[2025-12-02 07:45:31] 2025-12-02 11:42:55,970 | INFO     | mean y: 2562303.1302083335
[2025-12-02 07:45:31] 2025-12-02 11:42:55,970 | INFO     | intersect: -700593082.6046782
[2025-12-02 07:45:31] 2025-12-02 11:42:55,970 | INFO     | chi2: 2.088237978217216
[2025-12-02 07:45:31] 2025-12-02 11:42:55,970 | INFO     | current chi2=2.088237978217216 (change=59.75974308641274 %)
[2025-12-02 07:45:31] 2025-12-02 11:42:55,978 | INFO     | sum of square deviations: 16880698920.443254
[2025-12-02 07:45:31] 2025-12-02 11:42:55,980 | INFO     | sum of deviations: -27040327614.519787
[2025-12-02 07:45:31] 2025-12-02 11:42:55,980 | INFO     | mean x: 1764664146.3350923
[2025-12-02 07:45:31] 2025-12-02 11:42:55,980 | INFO     | mean y: 2569955.279683377
[2025-12-02 07:45:31] 2025-12-02 11:42:55,980 | INFO     | intersect: 2829295132.441058
[2025-12-02 07:45:31] 2025-12-02 11:42:55,980 | INFO     | chi2: 1.7703599558141145
[2025-12-02 07:45:31] 2025-12-02 11:42:55,981 | INFO     | current chi2=1.7703599558141145 (change=15.222308267493649 %)
[2025-12-02 07:45:31] 2025-12-02 11:42:55,981 | INFO     | left removable region: 20
[2025-12-02 07:45:31] 2025-12-02 11:42:55,981 | INFO     | sum of square deviations: 14227170143.240223
[2025-12-02 07:45:31] 2025-12-02 11:42:55,988 | INFO     | sum of deviations: -11393129059.2514
[2025-12-02 07:45:31] 2025-12-02 11:42:55,988 | INFO     | mean x: 1764664115.8435755
[2025-12-02 07:45:31] 2025-12-02 11:42:55,988 | INFO     | mean y: 2589995.4776536315
[2025-12-02 07:45:31] 2025-12-02 11:42:55,988 | INFO     | intersect: 1415734409.6947114
[2025-12-02 07:45:31] 2025-12-02 11:42:55,988 | INFO     | chi2: 0.0642326270028115
[2025-12-02 07:45:31] 2025-12-02 11:42:55,988 | INFO     | current memory leak: -0.80 B/s (using 358 data points, chi2=0.06)
[2025-12-02 07:45:31] 2025-12-02 11:42:55,989 | INFO     | could have reported an average CPU frequency of 3702 MHz (16 samples)
[2025-12-02 07:45:31] 2025-12-02 11:42:55,989 | INFO     | ..............................
[2025-12-02 07:45:31] 2025-12-02 11:42:55,989 | INFO     | . Timing measurements:
[2025-12-02 07:45:31] 2025-12-02 11:42:55,989 | INFO     | . get job = 0 s
[2025-12-02 07:45:31] 2025-12-02 11:42:55,989 | INFO     | . initial setup = 4 s
[2025-12-02 07:45:31] 2025-12-02 11:42:55,989 | INFO     | . payload setup = 51 s
[2025-12-02 07:45:31] 2025-12-02 11:42:55,989 | INFO     | . stage-in = 0 s
[2025-12-02 07:45:31] 2025-12-02 11:42:55,989 | INFO     | . payload execution = 23752 s
[2025-12-02 07:45:31] 2025-12-02 11:42:55,989 | INFO     | . stage-out = 8 s
[2025-12-02 07:45:31] 2025-12-02 11:42:55,989 | INFO     | . log creation = 1 s
[2025-12-02 07:45:31] 2025-12-02 11:42:55,989 | INFO     | ..............................
[2025-12-02 07:45:31] 2025-12-02 11:42:56,327 | INFO     | 
[2025-12-02 07:45:31] 2025-12-02 11:42:56,327 | INFO     | job summary report
[2025-12-02 07:45:31] 2025-12-02 11:42:56,327 | INFO     | --------------------------------------------------
[2025-12-02 07:45:31] 2025-12-02 11:42:56,327 | INFO     | PanDA job id: 6900275230
[2025-12-02 07:45:31] 2025-12-02 11:42:56,327 | INFO     | task id: 47523618
[2025-12-02 07:45:31] 2025-12-02 11:42:56,327 | INFO     | errors: (none)
[2025-12-02 07:45:31] 2025-12-02 11:42:56,327 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 07:45:31] 2025-12-02 11:42:56,327 | INFO     | pilot state: finished 
[2025-12-02 07:45:31] 2025-12-02 11:42:56,327 | INFO     | transexitcode: 0
[2025-12-02 07:45:31] 2025-12-02 11:42:56,327 | INFO     | exeerrorcode: 0
[2025-12-02 07:45:31] 2025-12-02 11:42:56,328 | INFO     | exeerrordiag: 
[2025-12-02 07:45:31] 2025-12-02 11:42:56,328 | INFO     | exitcode: 0
[2025-12-02 07:45:31] 2025-12-02 11:42:56,328 | INFO     | exitmsg: OK
[2025-12-02 07:45:31] 2025-12-02 11:42:56,328 | INFO     | cpuconsumptiontime: 43064 s
[2025-12-02 07:45:31] 2025-12-02 11:42:56,328 | INFO     | nevents: 400
[2025-12-02 07:45:31] 2025-12-02 11:42:56,332 | INFO     | neventsw: 0
[2025-12-02 07:45:31] 2025-12-02 11:42:56,332 | INFO     | pid: 1488284
[2025-12-02 07:45:31] 2025-12-02 11:42:56,332 | INFO     | pgrp: 1488284
[2025-12-02 07:45:31] 2025-12-02 11:42:56,332 | INFO     | corecount: 8
[2025-12-02 07:45:31] 2025-12-02 11:42:56,332 | INFO     | event service: False
[2025-12-02 07:45:31] 2025-12-02 11:42:56,332 | INFO     | sizes: {0: 2283067, 1: 2283752, 2: 2283951, 13: 2283951, 24: 2284007, 34: 2284035, 41: 2284453, 45: 2284481, 23806: 2319260, 23817: 2328258, 23818: 2328314, 23865:
[2025-12-02 07:45:31] 2025-12-02 11:42:56,332 | INFO     | --------------------------------------------------
[2025-12-02 07:45:31] 2025-12-02 11:42:56,332 | INFO     | 
[2025-12-02 07:45:31] 2025-12-02 11:42:56,332 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-12-02 07:45:31] 2025-12-02 11:42:56,585 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 07:45:31] 2025-12-02 11:42:56,585 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 07:45:31] 2025-12-02 11:42:56,585 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 07:45:31] 2025-12-02 11:42:56,585 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 07:45:31] 2025-12-02 11:42:56,585 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 07:45:31] 2025-12-02 11:42:56,585 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 07:45:31] 2025-12-02 11:42:56,585 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 07:45:31] 2025-12-02 11:42:56,585 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 07:45:31] 2025-12-02 11:42:56,585 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 07:45:31] 2025-12-02 11:42:56,585 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 07:45:31] 2025-12-02 11:42:56,585 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 07:45:31] 2025-12-02 11:42:56,586 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 07:45:31] 2025-12-02 11:42:56,586 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 07:45:31] 2025-12-02 11:42:56,586 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 07:45:31] 2025-12-02 11:42:56,586 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 07:45:31] 2025-12-02 11:42:56,586 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 07:45:31] 2025-12-02 11:42:56,586 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 07:45:31] 2025-12-02 11:42:56,586 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 07:45:31] 2025-12-02 11:42:56,586 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 07:45:31] 2025-12-02 11:42:56,586 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 07:45:31] 2025-12-02 11:42:56,586 | INFO     | job 6900275230 has completed (purged errors)
[2025-12-02 07:45:31] 2025-12-02 11:42:56,601 | INFO     | overall cleanup function is called
[2025-12-02 07:45:31] 2025-12-02 11:42:57,634 | INFO     | --- collectZombieJob: --- 10, [1488284]
[2025-12-02 07:45:31] 2025-12-02 11:42:57,634 | INFO     | zombie collector waiting for pid 1488284
[2025-12-02 07:45:31] 2025-12-02 11:42:57,634 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 07:45:31] 2025-12-02 11:42:57,634 | INFO     | collected zombie processes
[2025-12-02 07:45:31] 2025-12-02 11:42:57,634 | INFO     | will attempt to kill all subprocesses of pid=1488284
[2025-12-02 07:45:31] 2025-12-02 11:43:00,962 | INFO     | process IDs to be killed: [1488284] (in reverse order)
[2025-12-02 07:45:31] 2025-12-02 11:43:01,388 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 07:45:31] 2025-12-02 11:43:01,388 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 07:45:31] 2025-12-02 11:43:01,448 | INFO     | did not find any defunct processes belonging to 1488284
[2025-12-02 07:45:31] 2025-12-02 11:43:01,591 | INFO     | did not find any defunct processes belonging to 1488284
[2025-12-02 07:45:31] 2025-12-02 11:43:01,886 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 07:45:31] 2025-12-02 11:43:01,886 | INFO     | ready for new job
[2025-12-02 07:45:31] 2025-12-02 11:43:01,886 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 07:45:31] 2025-12-02 11:43:01,888 | INFO     | ***************************************
[2025-12-02 07:45:31] 2025-12-02 11:43:01,889 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 07:45:31] 2025-12-02 11:43:01,889 | INFO     | ***************************************
[2025-12-02 07:45:31] 2025-12-02 11:43:01,889 | INFO     | 
[2025-12-02 07:45:31] 2025-12-02 11:43:01,896 | INFO     | architecture information:
[2025-12-02 07:45:31] 2025-12-02 11:43:01,899 | INFO     | executing command: cat /etc/os-release
[2025-12-02 07:45:31] 2025-12-02 11:43:01,998 | INFO     | cat /etc/os-release:
[2025-12-02 07:45:31] NAME="CentOS Linux"
[2025-12-02 07:45:31] VERSION="7 (Core)"
[2025-12-02 07:45:31] ID="centos"
[2025-12-02 07:45:31] ID_LIKE="rhel fedora"
[2025-12-02 07:45:31] VERSION_ID="7"
[2025-12-02 07:45:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 07:45:31] ANSI_COLOR="0;31"
[2025-12-02 07:45:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 07:45:31] HOME_URL="https://www.centos.org/"
[2025-12-02 07:45:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 07:45:31] 
[2025-12-02 07:45:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 07:45:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 07:45:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 07:45:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 07:45:31] 
[2025-12-02 07:45:31] 2025-12-02 11:43:01,998 | INFO     | ***************************************
[2025-12-02 07:45:31] 2025-12-02 11:43:02,502 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-12-02 07:45:31] 2025-12-02 11:43:02,576 | INFO     | sufficient remaining disk space (159388794880 B)
[2025-12-02 07:45:31] 2025-12-02 11:43:02,577 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 07:45:31] 2025-12-02 11:43:02,577 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 07:45:31] 2025-12-02 11:43:02,577 | INFO     | update_server=False
[2025-12-02 07:45:31] 2025-12-02 11:43:02,577 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 07:45:31] 2025-12-02 11:43:02,577 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 07:45:31] 2025-12-02 11:43:02,616 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-02 07:45:31] 2025-12-02 11:43:02,616 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-02 07:45:31] 2025-12-02 11:43:02,616 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 07:45:31] 2025-12-02 11:43:02,616 | INFO     | will abort loop
[2025-12-02 07:45:31] 2025-12-02 11:43:03,109 | INFO     | all payload control threads have been joined
[2025-12-02 07:45:31] 2025-12-02 11:43:03,180 | INFO     | all data control threads have been joined
[2025-12-02 07:45:31] 2025-12-02 11:43:03,601 | INFO     | [job] retrieve thread has finished
[2025-12-02 07:45:31] 2025-12-02 11:43:03,642 | INFO     | [job] job monitor thread has finished
[2025-12-02 07:45:31] 2025-12-02 11:43:03,811 | INFO     | all job control threads have been joined
[2025-12-02 07:45:31] 2025-12-02 11:43:03,895 | INFO     | [job] validate thread has finished
[2025-12-02 07:45:31] 2025-12-02 11:43:03,914 | INFO     | [data] copytool_in thread has finished
[2025-12-02 07:45:31] 2025-12-02 11:43:04,117 | INFO     | [payload] control thread has finished
[2025-12-02 07:45:31] 2025-12-02 11:43:04,186 | INFO     | [data] control thread has finished
[2025-12-02 07:45:31] 2025-12-02 11:43:04,229 | INFO     | [payload] failed_post thread has finished
[2025-12-02 07:45:31] 2025-12-02 11:43:04,408 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 07:45:31] 2025-12-02 11:43:04,408 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 07:45:31] 2025-12-02 11:43:04,408 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 07:45:31] 2025-12-02 11:43:04,585 | INFO     | [data] copytool_out thread has finished
[2025-12-02 07:45:31] 2025-12-02 11:43:04,788 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 07:45:31] 2025-12-02 11:43:04,818 | INFO     | [job] control thread has finished
[2025-12-02 07:45:31] 2025-12-02 11:43:04,871 | INFO     | [payload] validate_post thread has finished
[2025-12-02 07:45:31] 2025-12-02 11:43:05,394 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 07:45:31] 2025-12-02 11:43:05,534 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 07:45:31] 2025-12-02 11:43:06,540 | INFO     | [job] queue monitor thread has finished
[2025-12-02 07:45:31] 2025-12-02 11:43:09,419 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 07:45:31] 2025-12-02 11:43:28,288 | INFO     | [monitor] cgroup control has ended
[2025-12-02 07:45:31] 2025-12-02 11:43:30,136 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140341781387072)>', '<ExcThread(monitor, started 140341210511104)>']
[2025-12-02 07:45:31] 2025-12-02 11:43:31,220 | INFO     | PID=1438933 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 07:45:31] 2025-12-02 11:43:31,220 | INFO     | .. there are 59 such processes running
[2025-12-02 07:45:31] 2025-12-02 11:43:31,228 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 07:45:31] 2025-12-02 11:43:31,228 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 07:45:31] 2025-12-02 11:43:31,228 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 07:45:31] 2025-12-02 11:43:31,228 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 07:45:31] 2025-12-02 11:43:31,228 | INFO     | [monitor] control thread has ended
[2025-12-02 07:45:31] 2025-12-02 11:43:35,178 | INFO     | all workflow threads have been joined
[2025-12-02 07:45:31] 2025-12-02 11:43:35,178 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 07:45:31] 2025-12-02 11:43:35,178 | INFO     | traces error code: 0
[2025-12-02 07:45:31] 2025-12-02 11:43:35,178 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 07:45:31] 2025-12-02 11:43:40,150 [wrapper] ==== pilot stdout END ====
[2025-12-02 07:45:31] 2025-12-02 11:43:40,207 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 07:45:31] 2025-12-02 11:43:40,229 [wrapper] pilotpid: 1438933
[2025-12-02 07:45:31] 2025-12-02 11:43:40,258 [wrapper] Pilot exit status: 0
[2025-12-02 07:45:31] 2025-12-02 11:43:40,481 [wrapper] pandaids: 6900275230
[2025-12-02 07:45:31] 2025-12-02 11:43:41,937 [wrapper] cleanup supervisor_pilot 4140574 1438935
[2025-12-02 07:45:31] 2025-12-02 11:43:42,003 [wrapper] Test setup, not cleaning
[2025-12-02 07:45:31] 2025-12-02 11:43:42,039 [wrapper] apfmon messages muted
[2025-12-02 07:45:31] 2025-12-02 11:43:42,096 [wrapper] ==== wrapper stdout END ====
[2025-12-02 07:45:31] 2025-12-02 11:43:42,128 [wrapper] ==== wrapper stderr END ====
[2025-12-02 07:45:31]  *** Error codes and diagnostics ***
[2025-12-02 07:45:31]     "exeErrorCode": 0,
[2025-12-02 07:45:31]     "exeErrorDiag": "",
[2025-12-02 07:45:31]     "pilotErrorCode": 0,
[2025-12-02 07:45:31]     "pilotErrorDiag": "",
[2025-12-02 07:45:31]  *** Listing of results directory ***
[2025-12-02 07:45:31] total 601664
[2025-12-02 07:45:31] -rw-r--r--. 1 boincer umatlas    576529 Nov 28 17:41 pilot3.tar.gz
[2025-12-02 07:45:31] -rwx------. 1 boincer umatlas     36292 Nov 28 17:46 runpilot2-wrapper.sh
[2025-12-02 07:45:31] -rw-r--r--. 1 boincer umatlas      5112 Nov 28 17:49 queuedata.json
[2025-12-02 07:45:31] -rw-r--r--. 1 boincer umatlas       100 Dec  2 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 07:45:31] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 00:02 run_atlas
[2025-12-02 07:45:31] -rw-r--r--. 1 boincer umatlas       105 Dec  2 00:02 job.xml
[2025-12-02 07:45:31] -rw-r--r--. 2 boincer umatlas 309903429 Dec  2 00:02 EVNT.47523616._000001.pool.root.1
[2025-12-02 07:45:31] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 00:02 start_atlas.sh
[2025-12-02 07:45:31] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 00:02 shared
[2025-12-02 07:45:31] -rw-r--r--. 2 boincer umatlas    589962 Dec  2 00:02 input.tar.gz
[2025-12-02 07:45:31] -rw-r--r--. 1 boincer umatlas         0 Dec  2 00:02 boinc_lockfile
[2025-12-02 07:45:31] -rw-r--r--. 1 boincer umatlas      2611 Dec  2 00:02 pandaJob.out
[2025-12-02 07:45:31] -rw-------. 1 boincer umatlas        57 Dec  2 00:02 setup.sh.local
[2025-12-02 07:45:31] -rw-------. 1 boincer umatlas    992001 Dec  2 00:03 agis_schedconf.cvmfs.json
[2025-12-02 07:45:31] drwx------. 5 boincer umatlas      4096 Dec  2 00:03 pilot3
[2025-12-02 07:45:31] -rw-------. 1 boincer umatlas 295525960 Dec  2 06:39 HITS.47523618._000127.pool.root.1
[2025-12-02 07:45:31] -rw-r--r--. 1 boincer umatlas       531 Dec  2 06:40 boinc_task_state.xml
[2025-12-02 07:45:31] -rw-------. 1 boincer umatlas      1050 Dec  2 06:41 memory_monitor_summary.json
[2025-12-02 07:45:31] -rw-------. 1 boincer umatlas   1516240 Dec  2 06:42 agis_ddmendpoints.agis.ALL.json
[2025-12-02 07:45:31] -rw-------. 1 boincer umatlas    565024 Dec  2 06:42 log.47523618._000127.job.log.tgz.1
[2025-12-02 07:45:31] -rw-------. 1 boincer umatlas        95 Dec  2 06:42 pilot_heartbeat.json
[2025-12-02 07:45:31] -rw-------. 1 boincer umatlas      7791 Dec  2 06:42 heartbeat.json
[2025-12-02 07:45:31] -rw-------. 1 boincer umatlas      5011 Dec  2 06:43 pilotlog.txt
[2025-12-02 07:45:31] -rw-------. 1 boincer umatlas   2812946 Dec  2 06:43 log.47523618._000127.job.log.1
[2025-12-02 07:45:31] -rw-------. 1 boincer umatlas       357 Dec  2 06:43 output.list
[2025-12-02 07:45:31] -rw-r--r--. 1 boincer umatlas       620 Dec  2 06:43 runtime_log
[2025-12-02 07:45:31] -rw-------. 1 boincer umatlas   3399680 Dec  2 06:43 result.tar.gz
[2025-12-02 07:45:31] -rw-r--r--. 1 boincer umatlas      9343 Dec  2 06:43 runtime_log.err
[2025-12-02 07:45:31] -rw-------. 1 boincer umatlas       662 Dec  2 06:43 iYHKDmPPMj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrrOKDmxzGLQm.diag
[2025-12-02 07:45:31] -rw-r--r--. 1 boincer umatlas        28 Dec  2 07:45 wrapper_checkpoint.txt
[2025-12-02 07:45:31] -rw-r--r--. 1 boincer umatlas      7175 Dec  2 07:45 init_data.xml
[2025-12-02 07:45:31] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 07:45 boinc_mmap_file
[2025-12-02 07:45:31] -rw-r--r--. 1 boincer umatlas     21358 Dec  2 07:45 stderr.txt
[2025-12-02 07:45:31] HITS file was successfully produced:
[2025-12-02 07:45:31] -rw-------. 1 boincer umatlas 295525960 Dec  2 06:39 shared/HITS.pool.root.1
[2025-12-02 07:45:31]  *** Contents of shared directory: ***
[2025-12-02 07:45:31] total 595168
[2025-12-02 07:45:31] -rw-r--r--. 2 boincer umatlas 309903429 Dec  2 00:02 ATLAS.root_0
[2025-12-02 07:45:31] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 00:02 start_atlas.sh
[2025-12-02 07:45:31] -rw-r--r--. 2 boincer umatlas    589962 Dec  2 00:02 input.tar.gz
[2025-12-02 07:45:31] -rw-------. 1 boincer umatlas 295525960 Dec  2 06:39 HITS.pool.root.1
[2025-12-02 07:45:31] -rw-------. 1 boincer umatlas   3399680 Dec  2 06:43 result.tar.gz
07:45:32 (1413257): run_atlas exited; CPU time 43872.950749
07:45:32 (1413257): called boinc_finish(0)

</stderr_txt>
]]>

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