Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:52:30 (523412): wrapper (7.7.26015): starting
06:52:30 (523412): wrapper: running run_atlas (--nthreads 4)
[2025-12-08 06:52:30] Arguments: --nthreads 4
[2025-12-08 06:52:30] Threads: 4
[2025-12-08 06:52:30] Checking for CVMFS
[2025-12-08 06:52:30] No cvmfs_config command found, will try listing directly
[2025-12-08 06:52:30] CVMFS is ok
[2025-12-08 06:52:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-08 06:52:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-08 06:52:30] Further information can be found at the LHC@home message board.
[2025-12-08 06:52:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-08 06:52:30] Checking for apptainer binary...
[2025-12-08 06:52:30] which: no apptainer in ((null))
[2025-12-08 06:52:30] apptainer is not installed, using version from CVMFS
[2025-12-08 06:52:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-08 06:52:30] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot108/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2025-12-08 06:52:30] apptainer works
[2025-12-08 06:52:30] Set ATHENA_PROC_NUMBER=4
[2025-12-08 06:52:30] Set ATHENA_CORE_NUMBER=4
[2025-12-08 06:52:30] Starting ATLAS job with PandaID=6898723860
[2025-12-08 06:52:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot108/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-08 22:59:48]  *** The last 200 lines of the pilot log: ***
[2025-12-08 22:59:48] 2025-12-08 21:45:04,177 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2672.0254609374997
[2025-12-08 22:59:48] 2025-12-08 21:45:04,200 | INFO     | using path: /scratch/boinc/var/slot108/slots/0/PanDA_Pilot-6898723860/memory_monitor_summary.json (trf name=prmon)
[2025-12-08 22:59:48] 2025-12-08 21:45:04,201 | INFO     | extracted standard info from prmon json
[2025-12-08 22:59:48] 2025-12-08 21:45:04,201 | INFO     | extracted standard memory fields from prmon json
[2025-12-08 22:59:48] 2025-12-08 21:45:04,201 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-08 22:59:48] 2025-12-08 21:45:04,215 | INFO     | fitting pss+swap vs Time
[2025-12-08 22:59:48] 2025-12-08 21:45:04,216 | INFO     | sum of square deviations: 254276060610.0
[2025-12-08 22:59:48] 2025-12-08 21:45:04,234 | INFO     | sum of deviations: 769907846893.0001
[2025-12-08 22:59:48] 2025-12-08 21:45:04,234 | INFO     | mean x: 1765201719.5
[2025-12-08 22:59:48] 2025-12-08 21:45:04,234 | INFO     | mean y: 2287057.888888889
[2025-12-08 22:59:48] 2025-12-08 21:45:04,234 | INFO     | intersect: -5342465617.340417
[2025-12-08 22:59:48] 2025-12-08 21:45:04,235 | INFO     | chi2: 3.6219215399633793
[2025-12-08 22:59:48] 2025-12-08 21:45:04,236 | INFO     | sum of square deviations: 250222849730.0
[2025-12-08 22:59:48] 2025-12-08 21:45:04,256 | INFO     | sum of deviations: 920269943048.9999
[2025-12-08 22:59:48] 2025-12-08 21:45:04,256 | INFO     | mean x: 1765201567.0
[2025-12-08 22:59:48] 2025-12-08 21:45:04,256 | INFO     | mean y: 2292707.3544575726
[2025-12-08 22:59:48] 2025-12-08 21:45:04,256 | INFO     | intersect: -6489768058.822379
[2025-12-08 22:59:48] 2025-12-08 21:45:04,257 | INFO     | chi2: 2.1002622838651113
[2025-12-08 22:59:48] 2025-12-08 21:45:04,257 | INFO     | current chi2=2.1002622838651113 (change=42.0124853426188 %)
[2025-12-08 22:59:48] 2025-12-08 21:45:04,258 | INFO     | sum of square deviations: 246212941987.5
[2025-12-08 22:59:48] 2025-12-08 21:45:04,278 | INFO     | sum of deviations: 915378370220.4999
[2025-12-08 22:59:48] 2025-12-08 21:45:04,278 | INFO     | mean x: 1765201414.5
[2025-12-08 22:59:48] 2025-12-08 21:45:04,278 | INFO     | mean y: 2292520.426565875
[2025-12-08 22:59:48] 2025-12-08 21:45:04,278 | INFO     | intersect: -6560429897.300627
[2025-12-08 22:59:48] 2025-12-08 21:45:04,279 | INFO     | chi2: 2.0917790431177523
[2025-12-08 22:59:48] 2025-12-08 21:45:04,279 | INFO     | current chi2=2.0917790431177523 (change=0.4039133975089651 %)
[2025-12-08 22:59:48] 2025-12-08 21:45:04,279 | INFO     | right removable region: 925
[2025-12-08 22:59:48] 2025-12-08 21:45:04,280 | INFO     | sum of square deviations: 250222849730.0
[2025-12-08 22:59:48] 2025-12-08 21:45:04,292 | INFO     | monitor loop #3848: job 0:6898723860 is in state 'finished'
[2025-12-08 22:59:48] 2025-12-08 21:45:04,293 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-08 22:59:48] 2025-12-08 21:45:04,299 | INFO     | sum of deviations: 589013244568.9998
[2025-12-08 22:59:48] 2025-12-08 21:45:04,299 | INFO     | mean x: 1765201872.0
[2025-12-08 22:59:48] 2025-12-08 21:45:04,299 | INFO     | mean y: 2293852.3684210526
[2025-12-08 22:59:48] 2025-12-08 21:45:04,299 | INFO     | intersect: -4152911330.0036025
[2025-12-08 22:59:48] 2025-12-08 21:45:04,300 | INFO     | chi2: 1.6336949391988027
[2025-12-08 22:59:48] 2025-12-08 21:45:04,301 | INFO     | current chi2=1.6336949391988027 (change=54.89424822782548 %)
[2025-12-08 22:59:48] 2025-12-08 21:45:04,302 | INFO     | sum of square deviations: 246212941987.5
[2025-12-08 22:59:48] 2025-12-08 21:45:04,322 | INFO     | sum of deviations: 563429796348.4999
[2025-12-08 22:59:48] 2025-12-08 21:45:04,322 | INFO     | mean x: 1765202024.5
[2025-12-08 22:59:48] 2025-12-08 21:45:04,322 | INFO     | mean y: 2294824.657667387
[2025-12-08 22:59:48] 2025-12-08 21:45:04,322 | INFO     | intersect: -4037165526.8151965
[2025-12-08 22:59:48] 2025-12-08 21:45:04,323 | INFO     | chi2: 1.6202772123696283
[2025-12-08 22:59:48] 2025-12-08 21:45:04,324 | INFO     | current chi2=1.6202772123696283 (change=0.8213116480457937 %)
[2025-12-08 22:59:48] 2025-12-08 21:45:04,324 | INFO     | left removable region: 20
[2025-12-08 22:59:48] 2025-12-08 21:45:04,325 | INFO     | sum of square deviations: 229838951260.0
[2025-12-08 22:59:48] 2025-12-08 21:45:04,344 | INFO     | sum of deviations: 676966841269.9999
[2025-12-08 22:59:48] 2025-12-08 21:45:04,345 | INFO     | mean x: 1765201994.0
[2025-12-08 22:59:48] 2025-12-08 21:45:04,345 | INFO     | mean y: 2301582.677348066
[2025-12-08 22:59:48] 2025-12-08 21:45:04,345 | INFO     | intersect: -5196918181.991209
[2025-12-08 22:59:48] 2025-12-08 21:45:04,346 | INFO     | chi2: 0.08083153940979695
[2025-12-08 22:59:48] 2025-12-08 21:45:04,346 | INFO     | current memory leak: 2.95 B/s (using 905 data points, chi2=0.08)
[2025-12-08 22:59:48] 2025-12-08 21:45:04,347 | INFO     | could have reported an average CPU frequency of 2701 MHz (35 samples)
[2025-12-08 22:59:48] 2025-12-08 21:45:04,347 | INFO     | ..............................
[2025-12-08 22:59:48] 2025-12-08 21:45:04,347 | INFO     | . Timing measurements:
[2025-12-08 22:59:48] 2025-12-08 21:45:04,347 | INFO     | . get job = 0 s
[2025-12-08 22:59:48] 2025-12-08 21:45:04,347 | INFO     | . initial setup = 1 s
[2025-12-08 22:59:48] 2025-12-08 21:45:04,347 | INFO     | . payload setup = 9 s
[2025-12-08 22:59:48] 2025-12-08 21:45:04,347 | INFO     | . stage-in = 0 s
[2025-12-08 22:59:48] 2025-12-08 21:45:04,348 | INFO     | . payload execution = 57090 s
[2025-12-08 22:59:48] 2025-12-08 21:45:04,348 | INFO     | . stage-out = 2 s
[2025-12-08 22:59:48] 2025-12-08 21:45:04,348 | INFO     | . log creation = 0 s
[2025-12-08 22:59:48] 2025-12-08 21:45:04,348 | INFO     | ..............................
[2025-12-08 22:59:48] 2025-12-08 21:45:04,914 | INFO     | 
[2025-12-08 22:59:48] 2025-12-08 21:45:04,915 | INFO     | job summary report
[2025-12-08 22:59:48] 2025-12-08 21:45:04,915 | INFO     | --------------------------------------------------
[2025-12-08 22:59:48] 2025-12-08 21:45:04,915 | INFO     | PanDA job id: 6898723860
[2025-12-08 22:59:48] 2025-12-08 21:45:04,915 | INFO     | task id: 47556161
[2025-12-08 22:59:48] 2025-12-08 21:45:04,915 | INFO     | errors: (none)
[2025-12-08 22:59:48] 2025-12-08 21:45:04,915 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-08 22:59:48] 2025-12-08 21:45:04,915 | INFO     | pilot state: finished 
[2025-12-08 22:59:48] 2025-12-08 21:45:04,916 | INFO     | transexitcode: 0
[2025-12-08 22:59:48] 2025-12-08 21:45:04,916 | INFO     | exeerrorcode: 0
[2025-12-08 22:59:48] 2025-12-08 21:45:04,916 | INFO     | exeerrordiag: 
[2025-12-08 22:59:48] 2025-12-08 21:45:04,916 | INFO     | exitcode: 0
[2025-12-08 22:59:48] 2025-12-08 21:45:04,916 | INFO     | exitmsg: OK
[2025-12-08 22:59:48] 2025-12-08 21:45:04,916 | INFO     | cpuconsumptiontime: 229979 s
[2025-12-08 22:59:48] 2025-12-08 21:45:04,916 | INFO     | nevents: 1000
[2025-12-08 22:59:48] 2025-12-08 21:45:04,916 | INFO     | neventsw: 0
[2025-12-08 22:59:48] 2025-12-08 21:45:04,916 | INFO     | pid: 535200
[2025-12-08 22:59:48] 2025-12-08 21:45:04,916 | INFO     | pgrp: 535200
[2025-12-08 22:59:48] 2025-12-08 21:45:04,916 | INFO     | corecount: 4
[2025-12-08 22:59:48] 2025-12-08 21:45:04,917 | INFO     | event service: False
[2025-12-08 22:59:48] 2025-12-08 21:45:04,917 | INFO     | sizes: {0: 2284156, 1: 2284355, 8: 2284617, 11: 2284645, 57104: 2338820, 57107: 2347838, 57110: 2348022, 57120: 2348268}
[2025-12-08 22:59:48] 2025-12-08 21:45:04,917 | INFO     | --------------------------------------------------
[2025-12-08 22:59:48] 2025-12-08 21:45:04,917 | INFO     | 
[2025-12-08 22:59:48] 2025-12-08 21:45:04,917 | INFO     | executing command: ls -lF /scratch/boinc/var/slot108/slots/0
[2025-12-08 22:59:48] 2025-12-08 21:45:04,947 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-08 22:59:48] 2025-12-08 21:45:04,947 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-08 22:59:48] 2025-12-08 21:45:04,947 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-08 22:59:48] 2025-12-08 21:45:04,947 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-08 22:59:48] 2025-12-08 21:45:04,948 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-08 22:59:48] 2025-12-08 21:45:04,948 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-08 22:59:48] 2025-12-08 21:45:04,948 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-08 22:59:48] 2025-12-08 21:45:04,948 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-08 22:59:48] 2025-12-08 21:45:04,948 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-08 22:59:48] 2025-12-08 21:45:04,948 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-08 22:59:48] 2025-12-08 21:45:04,948 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-08 22:59:48] 2025-12-08 21:45:04,948 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-08 22:59:48] 2025-12-08 21:45:04,948 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-08 22:59:48] 2025-12-08 21:45:04,948 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-08 22:59:48] 2025-12-08 21:45:04,948 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-08 22:59:48] 2025-12-08 21:45:04,949 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-08 22:59:48] 2025-12-08 21:45:04,949 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-08 22:59:48] 2025-12-08 21:45:04,949 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-08 22:59:48] 2025-12-08 21:45:04,949 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-08 22:59:48] 2025-12-08 21:45:04,949 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-08 22:59:48] 2025-12-08 21:45:04,949 | INFO     | job 6898723860 has completed (purged errors)
[2025-12-08 22:59:48] 2025-12-08 21:45:04,949 | INFO     | overall cleanup function is called
[2025-12-08 22:59:48] 2025-12-08 21:45:05,964 | INFO     | --- collectZombieJob: --- 10, [535200]
[2025-12-08 22:59:48] 2025-12-08 21:45:05,965 | INFO     | zombie collector waiting for pid 535200
[2025-12-08 22:59:48] 2025-12-08 21:45:05,965 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-08 22:59:48] 2025-12-08 21:45:05,965 | INFO     | collected zombie processes
[2025-12-08 22:59:48] 2025-12-08 21:45:05,965 | INFO     | will attempt to kill all subprocesses of pid=535200
[2025-12-08 22:59:48] 2025-12-08 21:45:06,774 | INFO     | process IDs to be killed: [535200] (in reverse order)
[2025-12-08 22:59:48] 2025-12-08 21:45:07,016 | WARNING  | found no corresponding commands to process id(s)
[2025-12-08 22:59:48] 2025-12-08 21:45:07,016 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-08 22:59:48] 2025-12-08 21:45:07,046 | INFO     | did not find any defunct processes belonging to 535200
[2025-12-08 22:59:48] 2025-12-08 21:45:07,073 | INFO     | did not find any defunct processes belonging to 535200
[2025-12-08 22:59:48] 2025-12-08 21:45:07,074 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-08 22:59:48] 2025-12-08 21:45:07,074 | INFO     | ready for new job
[2025-12-08 22:59:48] 2025-12-08 21:45:07,075 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-08 22:59:48] 2025-12-08 21:45:07,080 | INFO     | ***************************************
[2025-12-08 22:59:48] 2025-12-08 21:45:07,080 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-08 22:59:48] 2025-12-08 21:45:07,080 | INFO     | ***************************************
[2025-12-08 22:59:48] 2025-12-08 21:45:07,081 | INFO     | 
[2025-12-08 22:59:48] 2025-12-08 21:45:07,089 | INFO     | architecture information:
[2025-12-08 22:59:48] 2025-12-08 21:45:07,089 | INFO     | executing command: cat /etc/os-release
[2025-12-08 22:59:48] 2025-12-08 21:45:07,108 | INFO     | cat /etc/os-release:
[2025-12-08 22:59:48] NAME="CentOS Linux"
[2025-12-08 22:59:48] VERSION="7 (Core)"
[2025-12-08 22:59:48] ID="centos"
[2025-12-08 22:59:48] ID_LIKE="rhel fedora"
[2025-12-08 22:59:48] VERSION_ID="7"
[2025-12-08 22:59:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-08 22:59:48] ANSI_COLOR="0;31"
[2025-12-08 22:59:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-08 22:59:48] HOME_URL="https://www.centos.org/"
[2025-12-08 22:59:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-08 22:59:48] 
[2025-12-08 22:59:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-08 22:59:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-08 22:59:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-08 22:59:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-08 22:59:48] 
[2025-12-08 22:59:48] 2025-12-08 21:45:07,109 | INFO     | ***************************************
[2025-12-08 22:59:48] 2025-12-08 21:45:07,612 | INFO     | executing command: df -mP /scratch/boinc/var/slot108/slots/0
[2025-12-08 22:59:48] 2025-12-08 21:45:07,638 | INFO     | sufficient remaining disk space (3339498553344 B)
[2025-12-08 22:59:48] 2025-12-08 21:45:07,638 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-08 22:59:48] 2025-12-08 21:45:07,639 | INFO     | current server update state: UPDATING_FINAL
[2025-12-08 22:59:48] 2025-12-08 21:45:07,639 | INFO     | update_server=False
[2025-12-08 22:59:48] 2025-12-08 21:45:07,639 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-08 22:59:48] 2025-12-08 21:45:07,639 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-08 22:59:48] 2025-12-08 21:45:07,802 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-08 22:59:48] 2025-12-08 21:45:07,802 | INFO     | aborting loop
[2025-12-08 22:59:48] 2025-12-08 21:45:07,908 | INFO     | all job control threads have been joined
[2025-12-08 22:59:48] 2025-12-08 21:45:08,644 | INFO     | [job] retrieve thread has finished
[2025-12-08 22:59:48] 2025-12-08 21:45:08,663 | INFO     | [job] validate thread has finished
[2025-12-08 22:59:48] 2025-12-08 21:45:08,739 | INFO     | all data control threads have been joined
[2025-12-08 22:59:48] 2025-12-08 21:45:08,807 | INFO     | [job] job monitor thread has finished
[2025-12-08 22:59:48] 2025-12-08 21:45:08,910 | INFO     | [job] control thread has finished
[2025-12-08 22:59:48] 2025-12-08 21:45:09,061 | INFO     | [payload] validate_pre thread has finished
[2025-12-08 22:59:48] 2025-12-08 21:45:09,113 | INFO     | all payload control threads have been joined
[2025-12-08 22:59:48] 2025-12-08 21:45:09,413 | INFO     | [payload] validate_post thread has finished
[2025-12-08 22:59:48] 2025-12-08 21:45:09,433 | INFO     | [payload] failed_post thread has finished
[2025-12-08 22:59:48] 2025-12-08 21:45:09,450 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-08 22:59:48] 2025-12-08 21:45:09,616 | INFO     | [payload] execute_payloads thread has finished
[2025-12-08 22:59:48] 2025-12-08 21:45:09,645 | INFO     | [data] copytool_out thread has finished
[2025-12-08 22:59:48] 2025-12-08 21:45:09,684 | INFO     | [job] create_data_payload thread has finished
[2025-12-08 22:59:48] 2025-12-08 21:45:09,694 | INFO     | [data] copytool_in thread has finished
[2025-12-08 22:59:48] 2025-12-08 21:45:09,745 | INFO     | [data] control thread has finished
[2025-12-08 22:59:48] 2025-12-08 21:45:10,118 | INFO     | [payload] control thread has finished
[2025-12-08 22:59:48] 2025-12-08 21:45:10,223 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-08 22:59:48] 2025-12-08 21:45:10,455 | INFO     | [job] queue monitor thread has finished
[2025-12-08 22:59:48] 2025-12-08 21:45:14,229 | INFO     | [data] queue_monitor thread has finished
[2025-12-08 22:59:48] 2025-12-08 21:45:18,407 | INFO     | job.realtimelogging is not enabled
[2025-12-08 22:59:48] 2025-12-08 21:45:18,983 | INFO     | [monitor] cgroup control has ended
[2025-12-08 22:59:48] 2025-12-08 21:45:19,413 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-08 22:59:48] 2025-12-08 21:45:20,485 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22465607132992)>', '<ExcThread(monitor, started 22465367471872)>']
[2025-12-08 22:59:48] 2025-12-08 21:45:25,491 | INFO     | all workflow threads have been joined
[2025-12-08 22:59:48] 2025-12-08 21:45:25,492 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-08 22:59:48] 2025-12-08 21:45:25,492 | INFO     | traces error code: 0
[2025-12-08 22:59:48] 2025-12-08 21:45:25,492 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-08 22:59:48] 2025-12-08 21:45:37,113 | INFO     | PID=527719 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-08 22:59:48] 2025-12-08 21:45:37,113 | INFO     | .. there are 4 such processes running
[2025-12-08 22:59:48] 2025-12-08 21:45:37,113 | INFO     | found 0 job(s) in 20 queues
[2025-12-08 22:59:48] 2025-12-08 21:45:37,113 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-08 22:59:48] 2025-12-08 21:45:37,113 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-08 22:59:48] 2025-12-08 21:45:37,114 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-08 22:59:48] 2025-12-08 21:45:37,114 | CRITICAL | thread 'MainThread' is not alive
[2025-12-08 22:59:48] 2025-12-08 21:45:37,114 | INFO     | [monitor] control thread has ended
[2025-12-08 22:59:48] 2025-12-08 21:45:37,276 [wrapper] ==== pilot stdout END ====
[2025-12-08 22:59:48] 2025-12-08 21:45:37,280 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-08 22:59:48] 2025-12-08 21:45:37,284 [wrapper] pilotpid: 527719
[2025-12-08 22:59:48] 2025-12-08 21:45:37,288 [wrapper] Pilot exit status: 0
[2025-12-08 22:59:48] 2025-12-08 21:45:37,303 [wrapper] pandaids: 6898723860
[2025-12-08 22:59:48] 2025-12-08 21:45:37,486 [wrapper] cleanup supervisor_pilot 1551767 527720
[2025-12-08 22:59:48] 2025-12-08 21:45:37,491 [wrapper] Test setup, not cleaning
[2025-12-08 22:59:48] 2025-12-08 21:45:37,496 [wrapper] apfmon messages muted
[2025-12-08 22:59:48] 2025-12-08 21:45:37,500 [wrapper] ==== wrapper stdout END ====
[2025-12-08 22:59:48] 2025-12-08 21:45:37,504 [wrapper] ==== wrapper stderr END ====
[2025-12-08 22:59:48]  *** Error codes and diagnostics ***
[2025-12-08 22:59:48]     "exeErrorCode": 0,
[2025-12-08 22:59:48]     "exeErrorDiag": "",
[2025-12-08 22:59:48]     "pilotErrorCode": 0,
[2025-12-08 22:59:48]     "pilotErrorDiag": "",
[2025-12-08 22:59:48]  *** Listing of results directory ***
[2025-12-08 22:59:48] total 1328612
[2025-12-08 22:59:48] -rw-r--r-- 1 boinc boinc    576529 Nov 26 23:16 pilot3.tar.gz
[2025-12-08 22:59:48] -rwx------ 1 boinc boinc     36292 Nov 27 00:04 runpilot2-wrapper.sh
[2025-12-08 22:59:48] -rw-r--r-- 1 boinc boinc      5112 Nov 27 00:04 queuedata.json
[2025-12-08 22:59:48] -rw-r--r-- 1 boinc boinc       100 Dec  8 06:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-08 22:59:48] -rwxr-xr-x 1 boinc boinc      7986 Dec  8 06:52 run_atlas
[2025-12-08 22:59:48] -rw-r--r-- 1 boinc boinc       105 Dec  8 06:52 job.xml
[2025-12-08 22:59:48] -rw-r--r-- 2 boinc boinc 410592423 Dec  8 06:52 EVNT.47483658._002721.pool.root.1
[2025-12-08 22:59:48] -rw-r--r-- 1 boinc boinc      6691 Dec  8 06:52 init_data.xml
[2025-12-08 22:59:48] -rw-r--r-- 2 boinc boinc     15847 Dec  8 06:52 start_atlas.sh
[2025-12-08 22:59:48] drwxrwx--x 2 boinc boinc      4096 Dec  8 06:52 shared
[2025-12-08 22:59:48] -rw-r--r-- 2 boinc boinc    590109 Dec  8 06:52 input.tar.gz
[2025-12-08 22:59:48] -rw-r--r-- 1 boinc boinc         0 Dec  8 06:52 boinc_lockfile
[2025-12-08 22:59:48] -rw-r--r-- 1 boinc boinc      2786 Dec  8 06:52 pandaJob.out
[2025-12-08 22:59:48] -rw------- 1 boinc boinc    981501 Dec  8 06:52 agis_schedconf.cvmfs.json
[2025-12-08 22:59:48] drwx------ 5 boinc boinc      4096 Dec  8 06:52 pilot3
[2025-12-08 22:59:48] -rw-r--r-- 1 boinc boinc       531 Dec  8 22:38 boinc_task_state.xml
[2025-12-08 22:59:48] -rw------- 1 boinc boinc 926931568 Dec  8 22:44 HITS.47556161._007037.pool.root.1
[2025-12-08 22:59:48] -rw------- 1 boinc boinc        95 Dec  8 22:44 pilot_heartbeat.json
[2025-12-08 22:59:48] -rw------- 1 boinc boinc      1040 Dec  8 22:44 memory_monitor_summary.json
[2025-12-08 22:59:48] -rw------- 1 boinc boinc   1516240 Dec  8 22:44 agis_ddmendpoints.agis.ALL.json
[2025-12-08 22:59:48] -rw------- 1 boinc boinc   1682532 Dec  8 22:44 log.47556161._007037.job.log.tgz.1
[2025-12-08 22:59:48] -rw------- 1 boinc boinc      8606 Dec  8 22:45 heartbeat.json
[2025-12-08 22:59:48] -rw------- 1 boinc boinc       891 Dec  8 22:45 pilotlog.txt
[2025-12-08 22:59:48] -rw------- 1 boinc boinc   7853845 Dec  8 22:45 log.47556161._007037.job.log.1
[2025-12-08 22:59:48] -rw------- 1 boinc boinc       353 Dec  8 22:45 output.list
[2025-12-08 22:59:48] -rw-r--r-- 1 boinc boinc       620 Dec  8 22:45 runtime_log
[2025-12-08 22:59:48] -rw------- 1 boinc boinc   9553920 Dec  8 22:45 result.tar.gz
[2025-12-08 22:59:48] -rw-r--r-- 1 boinc boinc      9223 Dec  8 22:45 runtime_log.err
[2025-12-08 22:59:48] -rw------- 1 boinc boinc       670 Dec  8 22:45 5IzKDmVjdi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKONKDmQAtXnm.diag
[2025-12-08 22:59:48] -rw-r--r-- 1 boinc boinc        28 Dec  8 22:59 wrapper_checkpoint.txt
[2025-12-08 22:59:48] -rw-r--r-- 1 boinc boinc      8192 Dec  8 22:59 boinc_mmap_file
[2025-12-08 22:59:48] -rw-r--r-- 1 boinc boinc     21033 Dec  8 22:59 stderr.txt
[2025-12-08 22:59:48] HITS file was successfully produced:
[2025-12-08 22:59:48] -rw------- 1 boinc boinc 926931568 Dec  8 22:44 shared/HITS.pool.root.1
[2025-12-08 22:59:48]  *** Contents of shared directory: ***
[2025-12-08 22:59:48] total 1316116
[2025-12-08 22:59:48] -rw-r--r-- 2 boinc boinc 410592423 Dec  8 06:52 ATLAS.root_0
[2025-12-08 22:59:48] -rw-r--r-- 2 boinc boinc     15847 Dec  8 06:52 start_atlas.sh
[2025-12-08 22:59:48] -rw-r--r-- 2 boinc boinc    590109 Dec  8 06:52 input.tar.gz
[2025-12-08 22:59:48] -rw------- 1 boinc boinc 926931568 Dec  8 22:44 HITS.pool.root.1
[2025-12-08 22:59:48] -rw------- 1 boinc boinc   9553920 Dec  8 22:45 result.tar.gz
22:59:49 (523412): run_atlas exited; CPU time 233044.238073
22:59:49 (523412): called boinc_finish(0)

</stderr_txt>
]]>

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