Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:58:22 (3734781): wrapper (7.7.26015): starting
18:58:22 (3734781): wrapper: running run_atlas (--nthreads 3)
[2025-12-04 18:58:22] Arguments: --nthreads 3
[2025-12-04 18:58:22] Threads: 3
[2025-12-04 18:58:22] Checking for CVMFS
[2025-12-04 18:58:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-04 18:58:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-04 18:58:22] Running cvmfs_config stat atlas.cern.ch
[2025-12-04 18:58:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-04 18:58:22] 2.9.2.0 2507813 8776 90768 153639 2 81 18672604 36864001 0 130560 0 3299731 99.983 308457 655 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-04 18:58:22] CVMFS is ok
[2025-12-04 18:58:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-04 18:58:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-04 18:58:22] Further information can be found at the LHC@home message board.
[2025-12-04 18:58:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-04 18:58:22] Checking for apptainer binary...
[2025-12-04 18:58:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-04 18:58:22] Running /usr/bin/apptainer --version
[2025-12-04 18:58:22] apptainer version 1.4.1-1.1
[2025-12-04 18:58:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-04 18:58:22] magicA246a
[2025-12-04 18:58:22] apptainer works
[2025-12-04 18:58:22] Set ATHENA_PROC_NUMBER=3
[2025-12-04 18:58:22] Set ATHENA_CORE_NUMBER=3
[2025-12-04 18:58:22] Starting ATLAS job with PandaID=6892540338
[2025-12-04 18:58:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-05 03:03:08]  *** The last 200 lines of the pilot log: ***
[2025-12-05 03:03:08] 2025-12-05 02:02:56,193 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-05 03:03:08] 2025-12-05 02:02:56,194 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-05 03:03:08] 2025-12-05 02:02:56,194 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-05 03:03:08] 2025-12-05 02:02:56,194 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-05 03:03:08] 2025-12-05 02:02:56,194 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-05 03:03:08] 2025-12-05 02:02:56,194 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-05 03:03:08] 2025-12-05 02:02:56,194 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-05 03:03:08] 2025-12-05 02:02:56,194 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-05 03:03:08] 2025-12-05 02:02:56,194 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-05 03:03:08] 2025-12-05 02:02:56,194 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-05 03:03:08] 2025-12-05 02:02:56,194 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-05 03:03:08] 2025-12-05 02:02:56,194 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-05 03:03:08] 2025-12-05 02:02:56,194 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-05 03:03:08] 2025-12-05 02:02:56,194 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-05 03:03:08] 2025-12-05 02:02:56,194 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-05 03:03:08] 2025-12-05 02:02:56,194 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-05 03:03:08] 2025-12-05 02:02:56,194 | INFO     | job 6892540338 has completed (purged errors)
[2025-12-05 03:03:08] 2025-12-05 02:02:56,194 | INFO     | overall cleanup function is called
[2025-12-05 03:03:08] 2025-12-05 02:02:57,203 | INFO     | --- collectZombieJob: --- 10, [3744943]
[2025-12-05 03:03:08] 2025-12-05 02:02:57,203 | INFO     | zombie collector waiting for pid 3744943
[2025-12-05 03:03:08] 2025-12-05 02:02:57,204 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-05 03:03:08] 2025-12-05 02:02:57,204 | INFO     | collected zombie processes
[2025-12-05 03:03:08] 2025-12-05 02:02:57,204 | INFO     | will attempt to kill all subprocesses of pid=3744943
[2025-12-05 03:03:08] 2025-12-05 02:02:57,249 | INFO     | process IDs to be killed: [3744943] (in reverse order)
[2025-12-05 03:03:08] 2025-12-05 02:02:57,274 | WARNING  | found no corresponding commands to process id(s)
[2025-12-05 03:03:08] 2025-12-05 02:02:57,274 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-05 03:03:08] 2025-12-05 02:02:57,275 | INFO     | did not find any defunct processes belonging to 3744943
[2025-12-05 03:03:08] 2025-12-05 02:02:57,277 | INFO     | did not find any defunct processes belonging to 3744943
[2025-12-05 03:03:08] 2025-12-05 02:02:57,277 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-05 03:03:08] 2025-12-05 02:02:57,277 | INFO     | ready for new job
[2025-12-05 03:03:08] 2025-12-05 02:02:57,277 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-05 03:03:08] 2025-12-05 02:02:57,279 | INFO     | ***************************************
[2025-12-05 03:03:08] 2025-12-05 02:02:57,279 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-05 03:03:08] 2025-12-05 02:02:57,279 | INFO     | ***************************************
[2025-12-05 03:03:08] 2025-12-05 02:02:57,279 | INFO     | 
[2025-12-05 03:03:08] 2025-12-05 02:02:57,279 | INFO     | architecture information:
[2025-12-05 03:03:08] 2025-12-05 02:02:57,279 | INFO     | executing command: cat /etc/os-release
[2025-12-05 03:03:08] 2025-12-05 02:02:57,288 | INFO     | cat /etc/os-release:
[2025-12-05 03:03:08] NAME="CentOS Linux"
[2025-12-05 03:03:08] VERSION="7 (Core)"
[2025-12-05 03:03:08] ID="centos"
[2025-12-05 03:03:08] ID_LIKE="rhel fedora"
[2025-12-05 03:03:08] VERSION_ID="7"
[2025-12-05 03:03:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-05 03:03:08] ANSI_COLOR="0;31"
[2025-12-05 03:03:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-05 03:03:08] HOME_URL="https://www.centos.org/"
[2025-12-05 03:03:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-05 03:03:08] 
[2025-12-05 03:03:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-05 03:03:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-05 03:03:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-05 03:03:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-05 03:03:08] 
[2025-12-05 03:03:08] 2025-12-05 02:02:57,288 | INFO     | ***************************************
[2025-12-05 03:03:08] 2025-12-05 02:02:57,791 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-05 03:03:08] 2025-12-05 02:02:57,804 | INFO     | sufficient remaining disk space (285317529600 B)
[2025-12-05 03:03:08] 2025-12-05 02:02:57,804 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-05 03:03:08] 2025-12-05 02:02:57,804 | INFO     | current server update state: UPDATING_FINAL
[2025-12-05 03:03:08] 2025-12-05 02:02:57,804 | INFO     | update_server=False
[2025-12-05 03:03:08] 2025-12-05 02:02:57,804 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-05 03:03:08] 2025-12-05 02:02:57,804 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-05 03:03:08] 2025-12-05 02:02:57,805 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-05 03:03:08] 2025-12-05 02:02:57,805 | INFO     | found 0 job(s) in 20 queues
[2025-12-05 03:03:08] 2025-12-05 02:02:57,805 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-05 03:03:08] 2025-12-05 02:02:57,805 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-05 03:03:08] 2025-12-05 02:02:57,903 | INFO     | all payload control threads have been joined
[2025-12-05 03:03:08] 2025-12-05 02:02:58,185 | INFO     | all data control threads have been joined
[2025-12-05 03:03:08] 2025-12-05 02:02:58,350 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-05 03:03:08] 2025-12-05 02:02:58,771 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-05 03:03:08] 2025-12-05 02:02:58,771 | INFO     | aborting loop
[2025-12-05 03:03:08] 2025-12-05 02:02:58,810 | INFO     | [job] retrieve thread has finished
[2025-12-05 03:03:08] 2025-12-05 02:02:58,847 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-05 03:03:08] 2025-12-05 02:02:58,908 | INFO     | [payload] control thread has finished
[2025-12-05 03:03:08] 2025-12-05 02:02:59,025 | INFO     | all job control threads have been joined
[2025-12-05 03:03:08] 2025-12-05 02:02:59,191 | INFO     | [data] control thread has finished
[2025-12-05 03:03:08] 2025-12-05 02:02:59,339 | INFO     | [payload] execute_payloads thread has finished
[2025-12-05 03:03:08] 2025-12-05 02:02:59,686 | INFO     | [data] copytool_in thread has finished
[2025-12-05 03:03:08] 2025-12-05 02:02:59,693 | INFO     | [payload] failed_post thread has finished
[2025-12-05 03:03:08] 2025-12-05 02:02:59,776 | INFO     | [job] job monitor thread has finished
[2025-12-05 03:03:08] 2025-12-05 02:02:59,811 | INFO     | [data] copytool_out thread has finished
[2025-12-05 03:03:08] 2025-12-05 02:03:00,030 | INFO     | [job] control thread has finished
[2025-12-05 03:03:08] 2025-12-05 02:03:00,189 | INFO     | [payload] validate_pre thread has finished
[2025-12-05 03:03:08] 2025-12-05 02:03:00,189 | INFO     | [job] validate thread has finished
[2025-12-05 03:03:08] 2025-12-05 02:03:00,190 | INFO     | [job] create_data_payload thread has finished
[2025-12-05 03:03:08] 2025-12-05 02:03:00,225 | INFO     | [payload] validate_post thread has finished
[2025-12-05 03:03:08] 2025-12-05 02:03:00,754 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-05 03:03:08] 2025-12-05 02:03:01,759 | INFO     | [job] queue monitor thread has finished
[2025-12-05 03:03:08] 2025-12-05 02:03:02,014 | INFO     | [monitor] cgroup control has ended
[2025-12-05 03:03:08] 2025-12-05 02:03:02,357 | INFO     | [data] queue_monitor thread has finished
[2025-12-05 03:03:08] 2025-12-05 02:03:03,425 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139786954770240)>', '<ExcThread(monitor, started 139786463463168)>']
[2025-12-05 03:03:08] 2025-12-05 02:03:03,837 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-05 03:03:08] 2025-12-05 02:03:03,837 | INFO     | [monitor] control thread has ended
[2025-12-05 03:03:08] 2025-12-05 02:03:08,450 | INFO     | all workflow threads have been joined
[2025-12-05 03:03:08] 2025-12-05 02:03:08,451 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-05 03:03:08] 2025-12-05 02:03:08,451 | INFO     | traces error code: 0
[2025-12-05 03:03:08] 2025-12-05 02:03:08,451 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-05 03:03:08] 2025-12-05 02:03:08,502 [wrapper] ==== pilot stdout END ====
[2025-12-05 03:03:08] 2025-12-05 02:03:08,504 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-05 03:03:08] 2025-12-05 02:03:08,507 [wrapper] pilotpid: 3738500
[2025-12-05 03:03:08] 2025-12-05 02:03:08,509 [wrapper] Pilot exit status: 0
[2025-12-05 03:03:08] 2025-12-05 02:03:08,516 [wrapper] pandaids: 6892540338
[2025-12-05 03:03:08] 2025-12-05 02:03:08,532 [wrapper] cleanup supervisor_pilot 3796188 3738501
[2025-12-05 03:03:08] 2025-12-05 02:03:08,535 [wrapper] Test setup, not cleaning
[2025-12-05 03:03:08] 2025-12-05 02:03:08,537 [wrapper] apfmon messages muted
[2025-12-05 03:03:08] 2025-12-05 02:03:08,539 [wrapper] ==== wrapper stdout END ====
[2025-12-05 03:03:08] 2025-12-05 02:03:08,542 [wrapper] ==== wrapper stderr END ====
[2025-12-05 03:03:08]  *** Error codes and diagnostics ***
[2025-12-05 03:03:08]     "exeErrorCode": 0,
[2025-12-05 03:03:08]     "exeErrorDiag": "",
[2025-12-05 03:03:08]     "pilotErrorCode": 0,
[2025-12-05 03:03:08]     "pilotErrorDiag": "",
[2025-12-05 03:03:08]  *** Listing of results directory ***
[2025-12-05 03:03:08] total 1315788
[2025-12-05 03:03:08] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:27 pilot3.tar.gz
[2025-12-05 03:03:08] -rwx------ 1 boinc boinc     36292 Nov 19 08:31 runpilot2-wrapper.sh
[2025-12-05 03:03:08] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:31 queuedata.json
[2025-12-05 03:03:08] -rw-r--r-- 1 boinc boinc       100 Dec  4 18:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-05 03:03:08] -rwxr-xr-x 1 boinc boinc      7986 Dec  4 18:58 run_atlas
[2025-12-05 03:03:08] -rw-r--r-- 1 boinc boinc       105 Dec  4 18:58 job.xml
[2025-12-05 03:03:08] -rw-r--r-- 2 boinc boinc 411754312 Dec  4 18:58 EVNT.47493027._000230.pool.root.1
[2025-12-05 03:03:08] -rw-r--r-- 2 boinc boinc    590097 Dec  4 18:58 input.tar.gz
[2025-12-05 03:03:08] -rw-r--r-- 2 boinc boinc     15120 Dec  4 18:58 start_atlas.sh
[2025-12-05 03:03:08] drwxrwx--x 2 boinc boinc      4096 Dec  4 18:58 shared
[2025-12-05 03:03:08] -rw-r--r-- 1 boinc boinc         0 Dec  4 18:58 boinc_setup_complete
[2025-12-05 03:03:08] -rw-r--r-- 1 boinc boinc      6448 Dec  4 18:58 init_data.xml
[2025-12-05 03:03:08] -rw-r--r-- 1 boinc boinc         0 Dec  4 18:58 boinc_lockfile
[2025-12-05 03:03:08] -rw-r--r-- 1 boinc boinc      2773 Dec  4 18:58 pandaJob.out
[2025-12-05 03:03:08] -rw------- 1 boinc boinc    985572 Dec  4 18:58 agis_schedconf.cvmfs.json
[2025-12-05 03:03:08] drwx------ 5 boinc boinc      4096 Dec  4 18:58 pilot3
[2025-12-05 03:03:08] -rw-r--r-- 1 boinc boinc       531 Dec  5 02:59 boinc_task_state.xml
[2025-12-05 03:03:08] -rw------- 1 boinc boinc 921178225 Dec  5 03:02 HITS.47493029._002260.pool.root.1
[2025-12-05 03:03:08] -rw------- 1 boinc boinc      1023 Dec  5 03:02 memory_monitor_summary.json
[2025-12-05 03:03:08] -rw------- 1 boinc boinc   1516240 Dec  5 03:02 agis_ddmendpoints.agis.ALL.json
[2025-12-05 03:03:08] -rw------- 1 boinc boinc   1173662 Dec  5 03:02 log.47493029._002260.job.log.tgz.1
[2025-12-05 03:03:08] -rw------- 1 boinc boinc        95 Dec  5 03:02 pilot_heartbeat.json
[2025-12-05 03:03:08] -rw------- 1 boinc boinc      8566 Dec  5 03:02 heartbeat.json
[2025-12-05 03:03:08] -rw-r--r-- 1 boinc boinc        28 Dec  5 03:03 wrapper_checkpoint.txt
[2025-12-05 03:03:08] -rw-r--r-- 1 boinc boinc      8192 Dec  5 03:03 boinc_mmap_file
[2025-12-05 03:03:08] -rw------- 1 boinc boinc      4556 Dec  5 03:03 pilotlog.txt
[2025-12-05 03:03:08] -rw------- 1 boinc boinc   4094633 Dec  5 03:03 log.47493029._002260.job.log.1
[2025-12-05 03:03:08] -rw------- 1 boinc boinc       353 Dec  5 03:03 output.list
[2025-12-05 03:03:08] -rw-r--r-- 1 boinc boinc       620 Dec  5 03:03 runtime_log
[2025-12-05 03:03:08] -rw------- 1 boinc boinc   5283840 Dec  5 03:03 result.tar.gz
[2025-12-05 03:03:08] -rw-r--r-- 1 boinc boinc      8798 Dec  5 03:03 runtime_log.err
[2025-12-05 03:03:08] -rw------- 1 boinc boinc       669 Dec  5 03:03 RxTLDmAqrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxtGKDmlF7Gyn.diag
[2025-12-05 03:03:08] -rw-r--r-- 1 boinc boinc     12600 Dec  5 03:03 stderr.txt
[2025-12-05 03:03:08] HITS file was successfully produced:
[2025-12-05 03:03:08] -rw------- 1 boinc boinc 921178225 Dec  5 03:02 shared/HITS.pool.root.1
[2025-12-05 03:03:08]  *** Contents of shared directory: ***
[2025-12-05 03:03:08] total 1307460
[2025-12-05 03:03:08] -rw-r--r-- 2 boinc boinc 411754312 Dec  4 18:58 ATLAS.root_0
[2025-12-05 03:03:08] -rw-r--r-- 2 boinc boinc    590097 Dec  4 18:58 input.tar.gz
[2025-12-05 03:03:08] -rw-r--r-- 2 boinc boinc     15120 Dec  4 18:58 start_atlas.sh
[2025-12-05 03:03:08] -rw------- 1 boinc boinc 921178225 Dec  5 03:02 HITS.pool.root.1
[2025-12-05 03:03:08] -rw------- 1 boinc boinc   5283840 Dec  5 03:03 result.tar.gz
03:03:10 (3734781): run_atlas exited; CPU time 85890.165176
03:03:10 (3734781): called boinc_finish(0)

</stderr_txt>
]]>

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