Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:04 (1058971): wrapper (7.7.26015): starting
00:02:04 (1058971): wrapper: running run_atlas (--nthreads 9)
[2025-12-02 00:02:04] Arguments: --nthreads 9
[2025-12-02 00:02:04] Threads: 9
[2025-12-02 00:02:04] Checking for CVMFS
[2025-12-02 00:02:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 00:02:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 00:02:04] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 00:02:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 00:02:05] 2.13.3.0 12846 38197 340256 153544 3 368 21719072 32935936 29996 16776704 0 217060340 99.475 280375738 36744 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-02 00:02:05] CVMFS is ok
[2025-12-02 00:02:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 00:02:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 00:02:05] Further information can be found at the LHC@home message board.
[2025-12-02 00:02:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 00:02:05] Checking for apptainer binary...
[2025-12-02 00:02:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 00:02:05] Running /usr/bin/apptainer --version
[2025-12-02 00:02:05] apptainer version 1.4.4-1.el9
[2025-12-02 00:02:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 00:02:06] c7-16-9.aglt2.org
[2025-12-02 00:02:06] apptainer works
[2025-12-02 00:02:06] Set ATHENA_PROC_NUMBER=9
[2025-12-02 00:02:06] Set ATHENA_CORE_NUMBER=9
[2025-12-02 00:02:06] Starting ATLAS job with PandaID=6896450858
[2025-12-02 00:02:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 15:30:36]  *** The last 200 lines of the pilot log: ***
[2025-12-02 15:30:36] 2025-12-02 19:58:29,813 | INFO     | time since job start (53714s) is within the limit (172800.0s)
[2025-12-02 15:30:36] 2025-12-02 19:58:31,348 | INFO     | monitor loop #2825: job 0:6896450858 is in state 'finished'
[2025-12-02 15:30:36] 2025-12-02 19:58:31,348 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 15:30:36] 2025-12-02 19:58:31,836 | INFO     | time since job start (53716s) is within the limit (172800.0s)
[2025-12-02 15:30:36] 2025-12-02 19:58:33,844 | INFO     | time since job start (53718s) is within the limit (172800.0s)
[2025-12-02 15:30:36] 2025-12-02 19:58:33,853 | INFO     | monitor loop #2826: job 0:6896450858 is in state 'finished'
[2025-12-02 15:30:36] 2025-12-02 19:58:33,853 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 15:30:36] 2025-12-02 19:58:35,854 | INFO     | time since job start (53720s) is within the limit (172800.0s)
[2025-12-02 15:30:36] 2025-12-02 19:58:36,357 | INFO     | monitor loop #2827: job 0:6896450858 is in state 'finished'
[2025-12-02 15:30:36] 2025-12-02 19:58:36,358 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 15:30:36] 2025-12-02 19:58:37,861 | INFO     | time since job start (53722s) is within the limit (172800.0s)
[2025-12-02 15:30:36] 2025-12-02 19:58:38,865 | INFO     | monitor loop #2828: job 0:6896450858 is in state 'finished'
[2025-12-02 15:30:36] 2025-12-02 19:58:38,865 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 15:30:36] 2025-12-02 19:58:39,868 | INFO     | time since job start (53724s) is within the limit (172800.0s)
[2025-12-02 15:30:36] 2025-12-02 19:58:41,371 | INFO     | monitor loop #2829: job 0:6896450858 is in state 'finished'
[2025-12-02 15:30:36] 2025-12-02 19:58:41,371 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 15:30:36] 2025-12-02 19:58:41,875 | INFO     | time since job start (53726s) is within the limit (172800.0s)
[2025-12-02 15:30:36] 2025-12-02 19:58:42,153 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 15:30:36] 2025-12-02 19:58:42,186 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3060.267416666668
[2025-12-02 15:30:36] 2025-12-02 19:58:42,269 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6896450858/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 15:30:36] 2025-12-02 19:58:42,270 | INFO     | extracted standard info from prmon json
[2025-12-02 15:30:36] 2025-12-02 19:58:42,270 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 15:30:36] 2025-12-02 19:58:42,270 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 15:30:36] 2025-12-02 19:58:42,318 | INFO     | fitting pss+swap vs Time
[2025-12-02 15:30:36] 2025-12-02 19:58:42,332 | INFO     | sum of square deviations: 209856076005.37122
[2025-12-02 15:30:36] 2025-12-02 19:58:42,418 | INFO     | sum of deviations: 1652105454596.393
[2025-12-02 15:30:36] 2025-12-02 19:58:42,423 | INFO     | mean x: 1764678701.3644648
[2025-12-02 15:30:36] 2025-12-02 19:58:42,423 | INFO     | mean y: 2953246.4612756264
[2025-12-02 15:30:36] 2025-12-02 19:58:42,423 | INFO     | intersect: -13889593319.880182
[2025-12-02 15:30:36] 2025-12-02 19:58:42,424 | INFO     | chi2: 16.01188366040157
[2025-12-02 15:30:36] 2025-12-02 19:58:42,425 | INFO     | sum of square deviations: 206291382845.39053
[2025-12-02 15:30:36] 2025-12-02 19:58:42,537 | INFO     | sum of deviations: 1974935262825.4338
[2025-12-02 15:30:36] 2025-12-02 19:58:42,537 | INFO     | mean x: 1764678548.8751433
[2025-12-02 15:30:36] 2025-12-02 19:58:42,537 | INFO     | mean y: 2967056.545246277
[2025-12-02 15:30:36] 2025-12-02 19:58:42,537 | INFO     | intersect: -16891223314.640245
[2025-12-02 15:30:36] 2025-12-02 19:58:42,542 | INFO     | chi2: 12.349450078426868
[2025-12-02 15:30:36] 2025-12-02 19:58:42,543 | INFO     | current chi2=12.349450078426868 (change=22.873221287712315 %)
[2025-12-02 15:30:36] 2025-12-02 19:58:42,543 | INFO     | right removable region: 872
[2025-12-02 15:30:36] 2025-12-02 19:58:42,544 | INFO     | sum of square deviations: 206290384275.39062
[2025-12-02 15:30:36] 2025-12-02 19:58:42,579 | INFO     | sum of deviations: 1306353430574.4844
[2025-12-02 15:30:36] 2025-12-02 19:58:42,579 | INFO     | mean x: 1764678853.8751433
[2025-12-02 15:30:36] 2025-12-02 19:58:42,602 | INFO     | mean y: 2968030.151202749
[2025-12-02 15:30:36] 2025-12-02 19:58:42,602 | INFO     | intersect: -11172028238.916548
[2025-12-02 15:30:36] 2025-12-02 19:58:42,603 | INFO     | chi2: 12.205569854930985
[2025-12-02 15:30:36] 2025-12-02 19:58:42,603 | INFO     | current chi2=12.205569854930985 (change=23.771805280373385 %)
[2025-12-02 15:30:36] 2025-12-02 19:58:42,603 | INFO     | left removable region: 10
[2025-12-02 15:30:36] 2025-12-02 19:58:42,604 | INFO     | sum of square deviations: 198589664356.7194
[2025-12-02 15:30:36] 2025-12-02 19:58:42,666 | INFO     | sum of deviations: 1373145962602.9482
[2025-12-02 15:30:36] 2025-12-02 19:58:42,667 | INFO     | mean x: 1764678823.399072
[2025-12-02 15:30:36] 2025-12-02 19:58:42,667 | INFO     | mean y: 2998477.1832946637
[2025-12-02 15:30:36] 2025-12-02 19:58:42,667 | INFO     | intersect: -12198853061.720158
[2025-12-02 15:30:36] 2025-12-02 19:58:42,668 | INFO     | chi2: 4.730839146840985
[2025-12-02 15:30:36] 2025-12-02 19:58:42,668 | INFO     | current memory leak: 6.91 B/s (using 862 data points, chi2=4.73)
[2025-12-02 15:30:36] 2025-12-02 19:58:42,678 | INFO     | could have reported an average CPU frequency of 3161 MHz (33 samples)
[2025-12-02 15:30:36] 2025-12-02 19:58:42,679 | INFO     | ..............................
[2025-12-02 15:30:36] 2025-12-02 19:58:42,679 | INFO     | . Timing measurements:
[2025-12-02 15:30:36] 2025-12-02 19:58:42,679 | INFO     | . get job = 0 s
[2025-12-02 15:30:36] 2025-12-02 19:58:42,679 | INFO     | . initial setup = 5 s
[2025-12-02 15:30:36] 2025-12-02 19:58:42,679 | INFO     | . payload setup = 48 s
[2025-12-02 15:30:36] 2025-12-02 19:58:42,679 | INFO     | . stage-in = 0 s
[2025-12-02 15:30:36] 2025-12-02 19:58:42,679 | INFO     | . payload execution = 53566 s
[2025-12-02 15:30:36] 2025-12-02 19:58:42,679 | INFO     | . stage-out = 7 s
[2025-12-02 15:30:36] 2025-12-02 19:58:42,679 | INFO     | . log creation = 1 s
[2025-12-02 15:30:36] 2025-12-02 19:58:42,679 | INFO     | ..............................
[2025-12-02 15:30:36] 2025-12-02 19:58:43,134 | INFO     | 
[2025-12-02 15:30:36] 2025-12-02 19:58:43,134 | INFO     | job summary report
[2025-12-02 15:30:36] 2025-12-02 19:58:43,134 | INFO     | --------------------------------------------------
[2025-12-02 15:30:36] 2025-12-02 19:58:43,134 | INFO     | PanDA job id: 6896450858
[2025-12-02 15:30:36] 2025-12-02 19:58:43,135 | INFO     | task id: 47556149
[2025-12-02 15:30:36] 2025-12-02 19:58:43,135 | INFO     | errors: (none)
[2025-12-02 15:30:36] 2025-12-02 19:58:43,135 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 15:30:36] 2025-12-02 19:58:43,135 | INFO     | pilot state: finished 
[2025-12-02 15:30:36] 2025-12-02 19:58:43,135 | INFO     | transexitcode: 0
[2025-12-02 15:30:36] 2025-12-02 19:58:43,135 | INFO     | exeerrorcode: 0
[2025-12-02 15:30:36] 2025-12-02 19:58:43,135 | INFO     | exeerrordiag: 
[2025-12-02 15:30:36] 2025-12-02 19:58:43,135 | INFO     | exitcode: 0
[2025-12-02 15:30:36] 2025-12-02 19:58:43,135 | INFO     | exitmsg: OK
[2025-12-02 15:30:36] 2025-12-02 19:58:43,135 | INFO     | cpuconsumptiontime: 200816 s
[2025-12-02 15:30:36] 2025-12-02 19:58:43,135 | INFO     | nevents: 1000
[2025-12-02 15:30:36] 2025-12-02 19:58:43,135 | INFO     | neventsw: 0
[2025-12-02 15:30:36] 2025-12-02 19:58:43,135 | INFO     | pid: 1122164
[2025-12-02 15:30:36] 2025-12-02 19:58:43,135 | INFO     | pgrp: 1122164
[2025-12-02 15:30:36] 2025-12-02 19:58:43,136 | INFO     | corecount: 9
[2025-12-02 15:30:36] 2025-12-02 19:58:43,136 | INFO     | event service: False
[2025-12-02 15:30:36] 2025-12-02 19:58:43,136 | INFO     | sizes: {0: 2284144, 1: 2284343, 12: 2284343, 23: 2284371, 34: 2284399, 38: 2284689, 45: 2284845, 53619: 2333809, 53620: 2333808, 53628: 2342886, 53629: 2342942, 53
[2025-12-02 15:30:36] 2025-12-02 19:58:43,136 | INFO     | --------------------------------------------------
[2025-12-02 15:30:36] 2025-12-02 19:58:43,136 | INFO     | 
[2025-12-02 15:30:36] 2025-12-02 19:58:43,136 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-12-02 15:30:36] 2025-12-02 19:58:43,288 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 15:30:36] 2025-12-02 19:58:43,288 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 15:30:36] 2025-12-02 19:58:43,289 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 15:30:36] 2025-12-02 19:58:43,289 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 15:30:36] 2025-12-02 19:58:43,289 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 15:30:36] 2025-12-02 19:58:43,289 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 15:30:36] 2025-12-02 19:58:43,289 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 15:30:36] 2025-12-02 19:58:43,289 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 15:30:36] 2025-12-02 19:58:43,289 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 15:30:36] 2025-12-02 19:58:43,289 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 15:30:36] 2025-12-02 19:58:43,289 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 15:30:36] 2025-12-02 19:58:43,289 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 15:30:36] 2025-12-02 19:58:43,289 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 15:30:36] 2025-12-02 19:58:43,290 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 15:30:36] 2025-12-02 19:58:43,290 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 15:30:36] 2025-12-02 19:58:43,290 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 15:30:36] 2025-12-02 19:58:43,290 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 15:30:36] 2025-12-02 19:58:43,290 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 15:30:36] 2025-12-02 19:58:43,290 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 15:30:36] 2025-12-02 19:58:43,290 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 15:30:36] 2025-12-02 19:58:43,290 | INFO     | job 6896450858 has completed (purged errors)
[2025-12-02 15:30:36] 2025-12-02 19:58:43,290 | INFO     | overall cleanup function is called
[2025-12-02 15:30:36] 2025-12-02 19:58:44,395 | INFO     | --- collectZombieJob: --- 10, [1122164]
[2025-12-02 15:30:36] 2025-12-02 19:58:44,395 | INFO     | zombie collector waiting for pid 1122164
[2025-12-02 15:30:36] 2025-12-02 19:58:44,395 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 15:30:36] 2025-12-02 19:58:44,395 | INFO     | collected zombie processes
[2025-12-02 15:30:36] 2025-12-02 19:58:44,395 | INFO     | will attempt to kill all subprocesses of pid=1122164
[2025-12-02 15:30:36] 2025-12-02 19:58:46,897 | INFO     | process IDs to be killed: [1122164] (in reverse order)
[2025-12-02 15:30:36] 2025-12-02 19:58:47,222 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 15:30:36] 2025-12-02 19:58:47,222 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 15:30:36] 2025-12-02 19:58:47,253 | INFO     | did not find any defunct processes belonging to 1122164
[2025-12-02 15:30:36] 2025-12-02 19:58:47,282 | INFO     | did not find any defunct processes belonging to 1122164
[2025-12-02 15:30:36] 2025-12-02 19:58:47,284 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 15:30:36] 2025-12-02 19:58:47,284 | INFO     | ready for new job
[2025-12-02 15:30:36] 2025-12-02 19:58:47,284 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 15:30:36] 2025-12-02 19:58:47,289 | INFO     | ***************************************
[2025-12-02 15:30:36] 2025-12-02 19:58:47,289 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 15:30:36] 2025-12-02 19:58:47,289 | INFO     | ***************************************
[2025-12-02 15:30:36] 2025-12-02 19:58:47,289 | INFO     | 
[2025-12-02 15:30:36] 2025-12-02 19:58:47,294 | INFO     | architecture information:
[2025-12-02 15:30:36] 2025-12-02 19:58:47,303 | INFO     | executing command: cat /etc/os-release
[2025-12-02 15:30:36] 2025-12-02 19:58:47,369 | INFO     | cat /etc/os-release:
[2025-12-02 15:30:36] NAME="CentOS Linux"
[2025-12-02 15:30:36] VERSION="7 (Core)"
[2025-12-02 15:30:36] ID="centos"
[2025-12-02 15:30:36] ID_LIKE="rhel fedora"
[2025-12-02 15:30:36] VERSION_ID="7"
[2025-12-02 15:30:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 15:30:36] ANSI_COLOR="0;31"
[2025-12-02 15:30:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 15:30:36] HOME_URL="https://www.centos.org/"
[2025-12-02 15:30:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 15:30:36] 
[2025-12-02 15:30:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 15:30:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 15:30:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 15:30:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 15:30:36] 
[2025-12-02 15:30:36] 2025-12-02 19:58:47,369 | INFO     | ***************************************
[2025-12-02 15:30:36] 2025-12-02 19:58:47,873 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-12-02 15:30:36] 2025-12-02 19:58:47,923 | INFO     | sufficient remaining disk space (69502763008 B)
[2025-12-02 15:30:36] 2025-12-02 19:58:47,924 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 15:30:36] 2025-12-02 19:58:47,924 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 15:30:36] 2025-12-02 19:58:47,924 | INFO     | update_server=False
[2025-12-02 15:30:36] 2025-12-02 19:58:47,924 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 15:30:36] 2025-12-02 19:58:47,924 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 15:30:36] 2025-12-02 19:58:47,924 | INFO     | aborting loop
[2025-12-02 15:30:36] 2025-12-02 19:58:47,924 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 15:30:36] 2025-12-02 19:58:47,929 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 15:30:36] 2025-12-02 19:58:47,944 | INFO     | all payload control threads have been joined
[2025-12-02 15:30:36] 2025-12-02 19:58:48,196 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 15:30:36] 2025-12-02 19:58:48,743 | INFO     | all data control threads have been joined
[2025-12-02 15:30:36] 2025-12-02 19:58:48,754 | INFO     | all job control threads have been joined
[2025-12-02 15:30:36] 2025-12-02 19:58:48,932 | INFO     | [job] retrieve thread has finished
[2025-12-02 15:30:36] 2025-12-02 19:58:48,932 | INFO     | [job] job monitor thread has finished
[2025-12-02 15:30:36] 2025-12-02 19:58:48,950 | INFO     | [payload] control thread has finished
[2025-12-02 15:30:36] 2025-12-02 19:58:49,202 | INFO     | [job] queue monitor thread has finished
[2025-12-02 15:30:36] 2025-12-02 19:58:49,477 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 15:30:36] 2025-12-02 19:58:49,574 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 15:30:36] 2025-12-02 19:58:49,752 | INFO     | [data] control thread has finished
[2025-12-02 15:30:36] 2025-12-02 19:58:49,760 | INFO     | [job] control thread has finished
[2025-12-02 15:30:36] 2025-12-02 19:58:49,850 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 15:30:36] 2025-12-02 19:58:49,857 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 15:30:36] 2025-12-02 19:58:49,932 | INFO     | [data] copytool_out thread has finished
[2025-12-02 15:30:36] 2025-12-02 19:58:50,059 | INFO     | [payload] failed_post thread has finished
[2025-12-02 15:30:36] 2025-12-02 19:58:50,108 | INFO     | [data] copytool_in thread has finished
[2025-12-02 15:30:36] 2025-12-02 19:58:50,108 | INFO     | [job] validate thread has finished
[2025-12-02 15:30:36] 2025-12-02 19:58:50,326 | INFO     | [payload] validate_post thread has finished
[2025-12-02 15:30:36] 2025-12-02 19:58:51,939 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 15:30:36] 2025-12-02 19:58:52,213 | INFO     | [monitor] cgroup control has ended
[2025-12-02 15:30:36] 2025-12-02 19:58:53,344 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140066018199360)>', '<ExcThread(monitor, started 140065745377024)>']
[2025-12-02 15:30:36] 2025-12-02 19:58:58,370 | INFO     | all workflow threads have been joined
[2025-12-02 15:30:36] 2025-12-02 19:58:58,370 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 15:30:36] 2025-12-02 19:58:58,370 | INFO     | traces error code: 0
[2025-12-02 15:30:36] 2025-12-02 19:58:58,370 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 15:30:36] 2025-12-02 19:59:17,145 | INFO     | PID=1076892 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 15:30:36] 2025-12-02 19:59:17,146 | INFO     | .. there are 60 such processes running
[2025-12-02 15:30:36] 2025-12-02 19:59:17,146 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 15:30:36] 2025-12-02 19:59:17,146 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 15:30:36] 2025-12-02 19:59:17,146 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 15:30:36] 2025-12-02 19:59:17,146 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 15:30:36] 2025-12-02 19:59:17,146 | INFO     | [monitor] control thread has ended
[2025-12-02 15:30:36] 2025-12-02 19:59:17,824 [wrapper] ==== pilot stdout END ====
[2025-12-02 15:30:36] 2025-12-02 19:59:17,855 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 15:30:36] 2025-12-02 19:59:17,879 [wrapper] pilotpid: 1076892
[2025-12-02 15:30:36] 2025-12-02 19:59:17,898 [wrapper] Pilot exit status: 0
[2025-12-02 15:30:36] 2025-12-02 19:59:18,012 [wrapper] pandaids: 6896450858
[2025-12-02 15:30:36] 2025-12-02 19:59:18,295 [wrapper] cleanup supervisor_pilot 1501529 1076893
[2025-12-02 15:30:36] 2025-12-02 19:59:18,357 [wrapper] Test setup, not cleaning
[2025-12-02 15:30:36] 2025-12-02 19:59:18,395 [wrapper] apfmon messages muted
[2025-12-02 15:30:36] 2025-12-02 19:59:18,407 [wrapper] ==== wrapper stdout END ====
[2025-12-02 15:30:36] 2025-12-02 19:59:18,410 [wrapper] ==== wrapper stderr END ====
[2025-12-02 15:30:36]  *** Error codes and diagnostics ***
[2025-12-02 15:30:36]     "exeErrorCode": 0,
[2025-12-02 15:30:36]     "exeErrorDiag": "",
[2025-12-02 15:30:36]     "pilotErrorCode": 0,
[2025-12-02 15:30:36]     "pilotErrorDiag": "",
[2025-12-02 15:30:36]  *** Listing of results directory ***
[2025-12-02 15:30:36] total 1315312
[2025-12-02 15:30:36] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 23:09 pilot3.tar.gz
[2025-12-02 15:30:36] -rwx------. 1 boincer umatlas     36292 Nov 24 23:10 runpilot2-wrapper.sh
[2025-12-02 15:30:36] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 23:10 queuedata.json
[2025-12-02 15:30:36] -rw-r--r--. 1 boincer umatlas       100 Dec  2 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 15:30:36] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  2 00:02 run_atlas
[2025-12-02 15:30:36] -rw-r--r--. 1 boincer umatlas       105 Dec  2 00:02 job.xml
[2025-12-02 15:30:36] -rw-r--r--. 2 boincer umatlas 410396140 Dec  2 00:02 EVNT.47483658._001502.pool.root.1
[2025-12-02 15:30:36] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 00:02 start_atlas.sh
[2025-12-02 15:30:36] drwxrwx--x. 2 boincer umatlas      4096 Dec  2 00:02 shared
[2025-12-02 15:30:36] -rw-r--r--. 2 boincer umatlas    590099 Dec  2 00:02 input.tar.gz
[2025-12-02 15:30:36] -rw-r--r--. 1 boincer umatlas         0 Dec  2 00:02 boinc_lockfile
[2025-12-02 15:30:36] -rw-r--r--. 1 boincer umatlas      2786 Dec  2 00:02 pandaJob.out
[2025-12-02 15:30:36] -rw-------. 1 boincer umatlas        57 Dec  2 00:02 setup.sh.local
[2025-12-02 15:30:36] -rw-------. 1 boincer umatlas    992001 Dec  2 00:03 agis_schedconf.cvmfs.json
[2025-12-02 15:30:36] drwx------. 5 boincer umatlas      4096 Dec  2 00:03 pilot3
[2025-12-02 15:30:36] -rw-r--r--. 1 boincer umatlas       531 Dec  2 14:37 boinc_task_state.xml
[2025-12-02 15:30:36] -rw-------. 1 boincer umatlas 915745900 Dec  2 14:57 HITS.47556149._004884.pool.root.1
[2025-12-02 15:30:36] -rw-------. 1 boincer umatlas      1061 Dec  2 14:58 memory_monitor_summary.json
[2025-12-02 15:30:36] -rw-------. 1 boincer umatlas   1516240 Dec  2 14:58 agis_ddmendpoints.agis.ALL.json
[2025-12-02 15:30:36] -rw-------. 1 boincer umatlas   2124047 Dec  2 14:58 log.47556149._004884.job.log.tgz.1
[2025-12-02 15:30:36] -rw-------. 1 boincer umatlas        95 Dec  2 14:58 pilot_heartbeat.json
[2025-12-02 15:30:36] -rw-------. 1 boincer umatlas      8611 Dec  2 14:58 heartbeat.json
[2025-12-02 15:30:36] -rw-------. 1 boincer umatlas       823 Dec  2 14:59 pilotlog.txt
[2025-12-02 15:30:36] -rw-------. 1 boincer umatlas   6286588 Dec  2 14:59 log.47556149._004884.job.log.1
[2025-12-02 15:30:36] -rw-------. 1 boincer umatlas       353 Dec  2 14:59 output.list
[2025-12-02 15:30:36] -rw-r--r--. 1 boincer umatlas       620 Dec  2 14:59 runtime_log
[2025-12-02 15:30:36] -rw-------. 1 boincer umatlas   8427520 Dec  2 14:59 result.tar.gz
[2025-12-02 15:30:36] -rw-------. 1 boincer umatlas       664 Dec  2 14:59 ThxKDmMZzh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSJJKDm6KGbOm.diag
[2025-12-02 15:30:36] -rw-r--r--. 1 boincer umatlas      9338 Dec  2 14:59 runtime_log.err
[2025-12-02 15:30:36] -rw-r--r--. 1 boincer umatlas      6946 Dec  2 15:30 init_data.xml
[2025-12-02 15:30:36] -rw-r--r--. 1 boincer umatlas      8192 Dec  2 15:30 boinc_mmap_file
[2025-12-02 15:30:36] -rw-r--r--. 1 boincer umatlas        28 Dec  2 15:30 wrapper_checkpoint.txt
[2025-12-02 15:30:36] -rw-r--r--. 1 boincer umatlas     20486 Dec  2 15:30 stderr.txt
[2025-12-02 15:30:36] HITS file was successfully produced:
[2025-12-02 15:30:36] -rw-------. 1 boincer umatlas 915745900 Dec  2 14:57 shared/HITS.pool.root.1
[2025-12-02 15:30:36]  *** Contents of shared directory: ***
[2025-12-02 15:30:36] total 1303900
[2025-12-02 15:30:36] -rw-r--r--. 2 boincer umatlas 410396140 Dec  2 00:02 ATLAS.root_0
[2025-12-02 15:30:36] -rw-r--r--. 2 boincer umatlas     15847 Dec  2 00:02 start_atlas.sh
[2025-12-02 15:30:36] -rw-r--r--. 2 boincer umatlas    590099 Dec  2 00:02 input.tar.gz
[2025-12-02 15:30:36] -rw-------. 1 boincer umatlas 915745900 Dec  2 14:57 HITS.pool.root.1
[2025-12-02 15:30:36] -rw-------. 1 boincer umatlas   8427520 Dec  2 14:59 result.tar.gz
15:30:38 (1058971): run_atlas exited; CPU time 201885.613671
15:30:38 (1058971): called boinc_finish(0)

</stderr_txt>
]]>

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