Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:43:35 (15916): wrapper (7.7.26015): starting
23:43:35 (15916): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 23:43:35] Arguments: --nthreads 8
[2025-12-01 23:43:35] Threads: 8
[2025-12-01 23:43:35] Checking for CVMFS
[2025-12-01 23:43:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 23:43:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 23:43:35] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 23:43:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 23:43:35] 2.11.2.0 7040 125858 139392 153544 3 68 9470669 18432000 1569 130560 0 92237151 99.976 5172244 31462 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-01 23:43:35] CVMFS is ok
[2025-12-01 23:43:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 23:43:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 23:43:35] Further information can be found at the LHC@home message board.
[2025-12-01 23:43:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 23:43:35] Checking for apptainer binary...
[2025-12-01 23:43:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 23:43:35] Running /usr/bin/apptainer --version
[2025-12-01 23:43:36] apptainer version 1.3.2-1.el7
[2025-12-01 23:43:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 23:43:36] c-206-7.aglt2.org
[2025-12-01 23:43:36] apptainer works
[2025-12-01 23:43:36] Set ATHENA_PROC_NUMBER=8
[2025-12-01 23:43:36] Set ATHENA_CORE_NUMBER=8
[2025-12-01 23:43:36] Starting ATLAS job with PandaID=6905271022
[2025-12-01 23:43:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:20:03 (15916): BOINC client no longer exists - exiting
14:20:03 (15916): timer handler: client dead, exiting
14:27:31 (10872): wrapper (7.7.26015): starting
14:27:31 (10872): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 14:27:31] Arguments: --nthreads 8
[2025-12-02 14:27:31] Threads: 8
[2025-12-02 14:27:31] This job has been restarted, cleaning up previous attempt
[2025-12-02 14:27:32] Checking for CVMFS
[2025-12-02 14:27:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 14:27:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 14:27:32] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 14:27:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 14:27:32] 2.11.2.0 7040 126742 140216 153567 3 69 9712219 18432001 1 130560 0 93029672 99.976 5203246 31481 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-02 14:27:32] CVMFS is ok
[2025-12-02 14:27:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 14:27:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 14:27:32] Further information can be found at the LHC@home message board.
[2025-12-02 14:27:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 14:27:32] Checking for apptainer binary...
[2025-12-02 14:27:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 14:27:32] Running /usr/bin/apptainer --version
[2025-12-02 14:27:32] apptainer version 1.3.2-1.el7
[2025-12-02 14:27:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 14:27:33] c-206-7.aglt2.org
[2025-12-02 14:27:33] apptainer works
[2025-12-02 14:27:33] Set ATHENA_PROC_NUMBER=8
[2025-12-02 14:27:33] Set ATHENA_CORE_NUMBER=8
[2025-12-02 14:27:33] Starting ATLAS job with PandaID=6905271022
[2025-12-02 14:27:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 07:27:34]  *** The last 200 lines of the pilot log: ***
[2025-12-03 07:27:34] 2025-12-03 12:26:29,216 | INFO     | monitor loop #4378: job 0:6905271022 is in state 'finished'
[2025-12-03 07:27:34] 2025-12-03 12:26:29,216 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 07:27:34] 2025-12-03 12:26:29,795 | INFO     | time since job start (61123s) is within the limit (172800.0s)
[2025-12-03 07:27:34] 2025-12-03 12:26:30,193 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-03 07:27:34] 2025-12-03 12:26:30,199 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2122.875
[2025-12-03 07:27:34] 2025-12-03 12:26:30,203 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6905271022/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 07:27:34] 2025-12-03 12:26:30,204 | INFO     | extracted standard info from prmon json
[2025-12-03 07:27:34] 2025-12-03 12:26:30,204 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 07:27:34] 2025-12-03 12:26:30,204 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 07:27:34] 2025-12-03 12:26:30,219 | INFO     | fitting pss+swap vs Time
[2025-12-03 07:27:34] 2025-12-03 12:26:30,220 | INFO     | sum of square deviations: 311946671694.874
[2025-12-03 07:27:34] 2025-12-03 12:26:30,239 | INFO     | sum of deviations: 1968104449116.546
[2025-12-03 07:27:34] 2025-12-03 12:26:30,239 | INFO     | mean x: 1764734229.197605
[2025-12-03 07:27:34] 2025-12-03 12:26:30,239 | INFO     | mean y: 3367700.977045908
[2025-12-03 07:27:34] 2025-12-03 12:26:30,240 | INFO     | intersect: -11130526657.06023
[2025-12-03 07:27:34] 2025-12-03 12:26:30,241 | INFO     | chi2: 6.333059460792649
[2025-12-03 07:27:34] 2025-12-03 12:26:30,242 | INFO     | sum of square deviations: 307300276834.9243
[2025-12-03 07:27:34] 2025-12-03 12:26:30,262 | INFO     | sum of deviations: 2317583321653.881
[2025-12-03 07:27:34] 2025-12-03 12:26:30,262 | INFO     | mean x: 1764734076.7011032
[2025-12-03 07:27:34] 2025-12-03 12:26:30,262 | INFO     | mean y: 3379160.6539618857
[2025-12-03 07:27:34] 2025-12-03 12:26:30,262 | INFO     | intersect: -13305812439.956804
[2025-12-03 07:27:34] 2025-12-03 12:26:30,263 | INFO     | chi2: 3.5835997574164837
[2025-12-03 07:27:34] 2025-12-03 12:26:30,263 | INFO     | current chi2=3.5835997574164837 (change=43.414399002532676 %)
[2025-12-03 07:27:34] 2025-12-03 12:26:30,264 | INFO     | sum of square deviations: 302700254937.4589
[2025-12-03 07:27:34] 2025-12-03 12:26:30,283 | INFO     | sum of deviations: 2424913634578.029
[2025-12-03 07:27:34] 2025-12-03 12:26:30,283 | INFO     | mean x: 1764733924.204637
[2025-12-03 07:27:34] 2025-12-03 12:26:30,283 | INFO     | mean y: 3382711.689516129
[2025-12-03 07:27:34] 2025-12-03 12:26:30,283 | INFO     | intersect: -14133795187.583706
[2025-12-03 07:27:34] 2025-12-03 12:26:30,284 | INFO     | chi2: 3.1506795458121704
[2025-12-03 07:27:34] 2025-12-03 12:26:30,284 | INFO     | current chi2=3.1506795458121704 (change=12.080596074055366 %)
[2025-12-03 07:27:34] 2025-12-03 12:26:30,284 | INFO     | right removable region: 991
[2025-12-03 07:27:34] 2025-12-03 12:26:30,285 | INFO     | sum of square deviations: 307299850444.9238
[2025-12-03 07:27:34] 2025-12-03 12:26:30,304 | INFO     | sum of deviations: 1585180828078.5464
[2025-12-03 07:27:34] 2025-12-03 12:26:30,304 | INFO     | mean x: 1764734381.7011032
[2025-12-03 07:27:34] 2025-12-03 12:26:30,304 | INFO     | mean y: 3380258.595787362
[2025-12-03 07:27:34] 2025-12-03 12:26:30,304 | INFO     | intersect: -9099855894.866018
[2025-12-03 07:27:34] 2025-12-03 12:26:30,305 | INFO     | chi2: 3.445479151165585
[2025-12-03 07:27:34] 2025-12-03 12:26:30,305 | INFO     | current chi2=3.445479151165585 (change=45.595344990897225 %)
[2025-12-03 07:27:34] 2025-12-03 12:26:30,306 | INFO     | sum of square deviations: 302699584243.6774
[2025-12-03 07:27:34] 2025-12-03 12:26:30,325 | INFO     | sum of deviations: 1498030703119.7317
[2025-12-03 07:27:34] 2025-12-03 12:26:30,325 | INFO     | mean x: 1764734534.201613
[2025-12-03 07:27:34] 2025-12-03 12:26:30,325 | INFO     | mean y: 3383147.1663306453
[2025-12-03 07:27:34] 2025-12-03 12:26:30,325 | INFO     | intersect: -8730115848.859901
[2025-12-03 07:27:34] 2025-12-03 12:26:30,326 | INFO     | chi2: 3.3684461626838686
[2025-12-03 07:27:34] 2025-12-03 12:26:30,326 | INFO     | current chi2=3.3684461626838686 (change=2.235769978630016 %)
[2025-12-03 07:27:34] 2025-12-03 12:26:30,326 | INFO     | left removable region: 20
[2025-12-03 07:27:34] 2025-12-03 12:26:30,327 | INFO     | sum of square deviations: 283880142517.6825
[2025-12-03 07:27:34] 2025-12-03 12:26:30,345 | INFO     | sum of deviations: 1830555161520.7256
[2025-12-03 07:27:34] 2025-12-03 12:26:30,345 | INFO     | mean x: 1764734503.7106075
[2025-12-03 07:27:34] 2025-12-03 12:26:30,345 | INFO     | mean y: 3402452.842430484
[2025-12-03 07:27:34] 2025-12-03 12:26:30,346 | INFO     | intersect: -11376202424.8744
[2025-12-03 07:27:34] 2025-12-03 12:26:30,346 | INFO     | chi2: 0.11804764303290054
[2025-12-03 07:27:34] 2025-12-03 12:26:30,347 | INFO     | current memory leak: 6.45 B/s (using 971 data points, chi2=0.12)
[2025-12-03 07:27:34] 2025-12-03 12:26:30,347 | INFO     | could have reported an average CPU frequency of 2557 MHz (37 samples)
[2025-12-03 07:27:34] 2025-12-03 12:26:30,347 | INFO     | ..............................
[2025-12-03 07:27:34] 2025-12-03 12:26:30,348 | INFO     | . Timing measurements:
[2025-12-03 07:27:34] 2025-12-03 12:26:30,348 | INFO     | . get job = 0 s
[2025-12-03 07:27:34] 2025-12-03 12:26:30,348 | INFO     | . initial setup = 2 s
[2025-12-03 07:27:34] 2025-12-03 12:26:30,348 | INFO     | . payload setup = 11 s
[2025-12-03 07:27:34] 2025-12-03 12:26:30,348 | INFO     | . stage-in = 0 s
[2025-12-03 07:27:34] 2025-12-03 12:26:30,348 | INFO     | . payload execution = 61081 s
[2025-12-03 07:27:34] 2025-12-03 12:26:30,348 | INFO     | . stage-out = 3 s
[2025-12-03 07:27:34] 2025-12-03 12:26:30,348 | INFO     | . log creation = 0 s
[2025-12-03 07:27:34] 2025-12-03 12:26:30,348 | INFO     | ..............................
[2025-12-03 07:27:34] 2025-12-03 12:26:30,444 | INFO     | 
[2025-12-03 07:27:34] 2025-12-03 12:26:30,444 | INFO     | job summary report
[2025-12-03 07:27:34] 2025-12-03 12:26:30,445 | INFO     | --------------------------------------------------
[2025-12-03 07:27:34] 2025-12-03 12:26:30,445 | INFO     | PanDA job id: 6905271022
[2025-12-03 07:27:34] 2025-12-03 12:26:30,445 | INFO     | task id: 47538113
[2025-12-03 07:27:34] 2025-12-03 12:26:30,445 | INFO     | errors: (none)
[2025-12-03 07:27:34] 2025-12-03 12:26:30,445 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 07:27:34] 2025-12-03 12:26:30,445 | INFO     | pilot state: finished 
[2025-12-03 07:27:34] 2025-12-03 12:26:30,445 | INFO     | transexitcode: 0
[2025-12-03 07:27:34] 2025-12-03 12:26:30,445 | INFO     | exeerrorcode: 0
[2025-12-03 07:27:34] 2025-12-03 12:26:30,445 | INFO     | exeerrordiag: 
[2025-12-03 07:27:34] 2025-12-03 12:26:30,446 | INFO     | exitcode: 0
[2025-12-03 07:27:34] 2025-12-03 12:26:30,446 | INFO     | exitmsg: OK
[2025-12-03 07:27:34] 2025-12-03 12:26:30,446 | INFO     | cpuconsumptiontime: 468347 s
[2025-12-03 07:27:34] 2025-12-03 12:26:30,446 | INFO     | nevents: 1000
[2025-12-03 07:27:34] 2025-12-03 12:26:30,446 | INFO     | neventsw: 0
[2025-12-03 07:27:34] 2025-12-03 12:26:30,446 | INFO     | pid: 16229
[2025-12-03 07:27:34] 2025-12-03 12:26:30,446 | INFO     | pgrp: 16229
[2025-12-03 07:27:34] 2025-12-03 12:26:30,446 | INFO     | corecount: 8
[2025-12-03 07:27:34] 2025-12-03 12:26:30,446 | INFO     | event service: False
[2025-12-03 07:27:34] 2025-12-03 12:26:30,446 | INFO     | sizes: {0: 2284403, 1: 2284403, 5: 2284693, 11: 2284749, 61097: 2356563, 61100: 2365557, 61104: 2365741, 61109: 2365987}
[2025-12-03 07:27:34] 2025-12-03 12:26:30,447 | INFO     | --------------------------------------------------
[2025-12-03 07:27:34] 2025-12-03 12:26:30,447 | INFO     | 
[2025-12-03 07:27:34] 2025-12-03 12:26:30,447 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-03 07:27:34] 2025-12-03 12:26:30,462 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 07:27:34] 2025-12-03 12:26:30,463 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 07:27:34] 2025-12-03 12:26:30,463 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 07:27:34] 2025-12-03 12:26:30,463 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 07:27:34] 2025-12-03 12:26:30,463 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 07:27:34] 2025-12-03 12:26:30,463 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 07:27:34] 2025-12-03 12:26:30,463 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 07:27:34] 2025-12-03 12:26:30,463 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 07:27:34] 2025-12-03 12:26:30,463 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 07:27:34] 2025-12-03 12:26:30,464 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 07:27:34] 2025-12-03 12:26:30,464 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 07:27:34] 2025-12-03 12:26:30,464 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 07:27:34] 2025-12-03 12:26:30,464 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 07:27:34] 2025-12-03 12:26:30,464 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 07:27:34] 2025-12-03 12:26:30,464 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 07:27:34] 2025-12-03 12:26:30,464 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 07:27:34] 2025-12-03 12:26:30,464 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 07:27:34] 2025-12-03 12:26:30,464 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 07:27:34] 2025-12-03 12:26:30,465 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 07:27:34] 2025-12-03 12:26:30,465 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 07:27:34] 2025-12-03 12:26:30,465 | INFO     | job 6905271022 has completed (purged errors)
[2025-12-03 07:27:34] 2025-12-03 12:26:30,465 | INFO     | overall cleanup function is called
[2025-12-03 07:27:34] 2025-12-03 12:26:31,478 | INFO     | --- collectZombieJob: --- 10, [16229]
[2025-12-03 07:27:34] 2025-12-03 12:26:31,478 | INFO     | zombie collector waiting for pid 16229
[2025-12-03 07:27:34] 2025-12-03 12:26:31,478 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 07:27:34] 2025-12-03 12:26:31,479 | INFO     | collected zombie processes
[2025-12-03 07:27:34] 2025-12-03 12:26:31,479 | INFO     | will attempt to kill all subprocesses of pid=16229
[2025-12-03 07:27:34] 2025-12-03 12:26:31,583 | INFO     | process IDs to be killed: [16229] (in reverse order)
[2025-12-03 07:27:34] 2025-12-03 12:26:31,624 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 07:27:34] 2025-12-03 12:26:31,624 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 07:27:34] 2025-12-03 12:26:31,626 | INFO     | did not find any defunct processes belonging to 16229
[2025-12-03 07:27:34] 2025-12-03 12:26:31,629 | INFO     | did not find any defunct processes belonging to 16229
[2025-12-03 07:27:34] 2025-12-03 12:26:31,630 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 07:27:34] 2025-12-03 12:26:31,631 | INFO     | ready for new job
[2025-12-03 07:27:34] 2025-12-03 12:26:31,631 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 07:27:34] 2025-12-03 12:26:31,634 | INFO     | ***************************************
[2025-12-03 07:27:34] 2025-12-03 12:26:31,634 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 07:27:34] 2025-12-03 12:26:31,634 | INFO     | ***************************************
[2025-12-03 07:27:34] 2025-12-03 12:26:31,635 | INFO     | 
[2025-12-03 07:27:34] 2025-12-03 12:26:31,635 | INFO     | architecture information:
[2025-12-03 07:27:34] 2025-12-03 12:26:31,636 | INFO     | executing command: cat /etc/os-release
[2025-12-03 07:27:34] 2025-12-03 12:26:31,647 | INFO     | cat /etc/os-release:
[2025-12-03 07:27:34] NAME="CentOS Linux"
[2025-12-03 07:27:34] VERSION="7 (Core)"
[2025-12-03 07:27:34] ID="centos"
[2025-12-03 07:27:34] ID_LIKE="rhel fedora"
[2025-12-03 07:27:34] VERSION_ID="7"
[2025-12-03 07:27:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 07:27:34] ANSI_COLOR="0;31"
[2025-12-03 07:27:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 07:27:34] HOME_URL="https://www.centos.org/"
[2025-12-03 07:27:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 07:27:34] 
[2025-12-03 07:27:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 07:27:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 07:27:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 07:27:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 07:27:34] 
[2025-12-03 07:27:34] 2025-12-03 12:26:31,647 | INFO     | ***************************************
[2025-12-03 07:27:34] 2025-12-03 12:26:32,150 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-03 07:27:34] 2025-12-03 12:26:32,163 | INFO     | sufficient remaining disk space (27001880576 B)
[2025-12-03 07:27:34] 2025-12-03 12:26:32,163 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 07:27:34] 2025-12-03 12:26:32,163 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 07:27:34] 2025-12-03 12:26:32,163 | INFO     | update_server=False
[2025-12-03 07:27:34] 2025-12-03 12:26:32,164 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 07:27:34] 2025-12-03 12:26:32,164 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 07:27:34] 2025-12-03 12:26:32,164 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 07:27:34] 2025-12-03 12:26:32,727 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 07:27:34] 2025-12-03 12:26:32,728 | INFO     | aborting loop
[2025-12-03 07:27:34] 2025-12-03 12:26:32,751 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 07:27:34] 2025-12-03 12:26:32,940 | INFO     | all data control threads have been joined
[2025-12-03 07:27:34] 2025-12-03 12:26:33,169 | INFO     | [job] queue monitor thread has finished
[2025-12-03 07:27:34] 2025-12-03 12:26:33,169 | INFO     | [job] retrieve thread has finished
[2025-12-03 07:27:34] 2025-12-03 12:26:33,210 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 07:27:34] 2025-12-03 12:26:33,320 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 07:27:34] 2025-12-03 12:26:33,576 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 07:27:34] 2025-12-03 12:26:33,639 | INFO     | all payload control threads have been joined
[2025-12-03 07:27:34] 2025-12-03 12:26:33,733 | INFO     | [job] job monitor thread has finished
[2025-12-03 07:27:34] 2025-12-03 12:26:33,841 | INFO     | all job control threads have been joined
[2025-12-03 07:27:34] 2025-12-03 12:26:33,946 | INFO     | [data] control thread has finished
[2025-12-03 07:27:34] 2025-12-03 12:26:33,997 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 07:27:34] 2025-12-03 12:26:34,057 | INFO     | [job] validate thread has finished
[2025-12-03 07:27:34] 2025-12-03 12:26:34,195 | INFO     | [payload] validate_post thread has finished
[2025-12-03 07:27:34] 2025-12-03 12:26:34,357 | INFO     | [data] copytool_in thread has finished
[2025-12-03 07:27:34] 2025-12-03 12:26:34,540 | INFO     | [payload] failed_post thread has finished
[2025-12-03 07:27:34] 2025-12-03 12:26:34,644 | INFO     | [payload] control thread has finished
[2025-12-03 07:27:34] 2025-12-03 12:26:34,757 | INFO     | [data] copytool_out thread has finished
[2025-12-03 07:27:34] 2025-12-03 12:26:34,848 | INFO     | [job] control thread has finished
[2025-12-03 07:27:34] 2025-12-03 12:26:36,170 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 07:27:34] 2025-12-03 12:27:03,022 | INFO     | PID=21930 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 07:27:34] 2025-12-03 12:27:03,022 | INFO     | .. there are 2 such processes running
[2025-12-03 07:27:34] 2025-12-03 12:27:03,022 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 07:27:34] 2025-12-03 12:27:03,022 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 07:27:34] 2025-12-03 12:27:03,022 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 07:27:34] 2025-12-03 12:27:27,039 | INFO     | [monitor] cgroup control has ended
[2025-12-03 07:27:34] 2025-12-03 12:27:29,150 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139639476041536)>', '<ExcThread(monitor, started 139638882678528)>']
[2025-12-03 07:27:34] 2025-12-03 12:27:30,151 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 07:27:34] 2025-12-03 12:27:30,152 | INFO     | [monitor] control thread has ended
[2025-12-03 07:27:34] 2025-12-03 12:27:34,175 | INFO     | all workflow threads have been joined
[2025-12-03 07:27:34] 2025-12-03 12:27:34,175 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 07:27:34] 2025-12-03 12:27:34,176 | INFO     | traces error code: 0
[2025-12-03 07:27:34] 2025-12-03 12:27:34,177 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 07:27:34] 2025-12-03 12:27:34,285 [wrapper] ==== pilot stdout END ====
[2025-12-03 07:27:34] 2025-12-03 12:27:34,287 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 07:27:34] 2025-12-03 12:27:34,289 [wrapper] pilotpid: 21930
[2025-12-03 07:27:34] 2025-12-03 12:27:34,291 [wrapper] Pilot exit status: 0
[2025-12-03 07:27:34] 2025-12-03 12:27:34,299 [wrapper] pandaids: 6905271022 6905271022
[2025-12-03 07:27:34] 2025-12-03 12:27:34,324 [wrapper] cleanup supervisor_pilot   516 21931
[2025-12-03 07:27:34] 2025-12-03 12:27:34,326 [wrapper] Test setup, not cleaning
[2025-12-03 07:27:34] 2025-12-03 12:27:34,329 [wrapper] apfmon messages muted
[2025-12-03 07:27:34] 2025-12-03 12:27:34,331 [wrapper] ==== wrapper stdout END ====
[2025-12-03 07:27:34] 2025-12-03 12:27:34,332 [wrapper] ==== wrapper stderr END ====
[2025-12-03 07:27:34]  *** Error codes and diagnostics ***
[2025-12-03 07:27:34]     "exeErrorCode": 0,
[2025-12-03 07:27:34]     "exeErrorDiag": "",
[2025-12-03 07:27:34]     "pilotErrorCode": 0,
[2025-12-03 07:27:34]     "pilotErrorDiag": "",
[2025-12-03 07:27:34]  *** Listing of results directory ***
[2025-12-03 07:27:34] total 1446956
[2025-12-03 07:27:34] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-03 07:27:34] -rwx------ 1 boincer umatlas     36292 Nov 29 19:21 runpilot2-wrapper.sh
[2025-12-03 07:27:34] -rw-r--r-- 1 boincer umatlas    576529 Nov 29 19:24 pilot3.tar.gz
[2025-12-03 07:27:34] -rw-r--r-- 1 boincer umatlas      5112 Nov 29 19:27 queuedata.json
[2025-12-03 07:27:34] -rw-r--r-- 1 boincer umatlas       100 Dec  1 23:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 07:27:34] -rwxr-xr-x 1 boincer umatlas      7986 Dec  1 23:43 run_atlas
[2025-12-03 07:27:34] -rw-r--r-- 1 boincer umatlas       105 Dec  1 23:43 job.xml
[2025-12-03 07:27:34] -rw-r--r-- 3 boincer umatlas 376397399 Dec  1 23:43 EVNT.47528871._000107.pool.root.1
[2025-12-03 07:27:34] -rw-r--r-- 3 boincer umatlas 376397399 Dec  1 23:43 ATLAS.root_0
[2025-12-03 07:27:34] -rw-r--r-- 2 boincer umatlas     15847 Dec  1 23:43 start_atlas.sh
[2025-12-03 07:27:34] drwxrwx--x 2 boincer umatlas      4096 Dec  1 23:43 shared
[2025-12-03 07:27:34] -rw-r--r-- 2 boincer umatlas    590139 Dec  1 23:43 input.tar.gz
[2025-12-03 07:27:34] -rw-r--r-- 1 boincer umatlas         0 Dec  1 23:43 boinc_lockfile
[2025-12-03 07:27:34] -rw-r--r-- 1 boincer umatlas      2880 Dec  2 14:27 pandaJob.out
[2025-12-03 07:27:34] -rw------- 1 boincer umatlas        57 Dec  2 14:27 setup.sh.local
[2025-12-03 07:27:34] -rw------- 1 boincer umatlas    989224 Dec  2 14:27 agis_schedconf.cvmfs.json
[2025-12-03 07:27:34] -rw-r--r-- 1 boincer umatlas       534 Dec  3 07:16 boinc_task_state.xml
[2025-12-03 07:27:34] -rw-r--r-- 1 boincer umatlas      5954 Dec  3 07:21 init_data.xml
[2025-12-03 07:27:34] -rw------- 1 boincer umatlas 703383149 Dec  3 07:25 HITS.47538113._002767.pool.root.1
[2025-12-03 07:27:34] -rw------- 1 boincer umatlas      1062 Dec  3 07:26 memory_monitor_summary.json
[2025-12-03 07:27:34] -rw------- 1 boincer umatlas        96 Dec  3 07:26 pilot_heartbeat.json
[2025-12-03 07:27:34] -rw------- 1 boincer umatlas   1516240 Dec  3 07:26 agis_ddmendpoints.agis.ALL.json
[2025-12-03 07:27:34] -rw------- 1 boincer umatlas   2281879 Dec  3 07:26 log.47538113._002767.job.log.tgz.1
[2025-12-03 07:27:34] -rw------- 1 boincer umatlas     28072 Dec  3 07:26 heartbeat.json
[2025-12-03 07:27:34] -rw-r--r-- 1 boincer umatlas        30 Dec  3 07:27 wrapper_checkpoint.txt
[2025-12-03 07:27:34] -rw-r--r-- 1 boincer umatlas      8192 Dec  3 07:27 boinc_mmap_file
[2025-12-03 07:27:34] -rw------- 1 boincer umatlas      4821 Dec  3 07:27 pilotlog.txt
[2025-12-03 07:27:34] -rw------- 1 boincer umatlas   8489344 Dec  3 07:27 log.47538113._002767.job.log.1
[2025-12-03 07:27:34] -rw------- 1 boincer umatlas       353 Dec  3 07:27 output.list
[2025-12-03 07:27:34] -rw-r--r-- 1 boincer umatlas       620 Dec  3 07:27 runtime_log
[2025-12-03 07:27:34] -rw------- 1 boincer umatlas  10813440 Dec  3 07:27 result.tar.gz
[2025-12-03 07:27:34] -rw-r--r-- 1 boincer umatlas      9423 Dec  3 07:27 runtime_log.err
[2025-12-03 07:27:34] -rw------- 1 boincer umatlas       792 Dec  3 07:27 NGsMDmDNkj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhJMKDmhbYRpm.diag
[2025-12-03 07:27:34] -rw-r--r-- 1 boincer umatlas     23557 Dec  3 07:27 stderr.txt
[2025-12-03 07:27:34] HITS file was successfully produced:
[2025-12-03 07:27:34] -rw------- 1 boincer umatlas 703383149 Dec  3 07:25 shared/HITS.pool.root.1
[2025-12-03 07:27:34]  *** Contents of shared directory: ***
[2025-12-03 07:27:34] total 1065640
[2025-12-03 07:27:34] -rw-r--r-- 3 boincer umatlas 376397399 Dec  1 23:43 ATLAS.root_0
[2025-12-03 07:27:34] -rw-r--r-- 2 boincer umatlas     15847 Dec  1 23:43 start_atlas.sh
[2025-12-03 07:27:34] -rw-r--r-- 2 boincer umatlas    590139 Dec  1 23:43 input.tar.gz
[2025-12-03 07:27:34] -rw------- 1 boincer umatlas 703383149 Dec  3 07:25 HITS.pool.root.1
[2025-12-03 07:27:34] -rw------- 1 boincer umatlas  10813440 Dec  3 07:27 result.tar.gz
07:27:35 (10872): run_atlas exited; CPU time 466724.847023
07:27:35 (10872): called boinc_finish(0)

</stderr_txt>
]]>

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