Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:07:41 (1613636): wrapper (7.7.26015): starting
13:07:41 (1613636): wrapper: running run_atlas (--nthreads 12)
[2025-12-02 13:07:41] Arguments: --nthreads 12
[2025-12-02 13:07:41] Threads: 12
[2025-12-02 13:07:41] Checking for CVMFS
[2025-12-02 13:07:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 13:07:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 13:07:42] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 13:07:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 13:07:42] 2.13.3.0 9777 15677 111528 153550 3 80 3423059 4097024 1044 130560 0 11905842 99.927 1345147 1702 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-12-02 13:07:42] CVMFS is ok
[2025-12-02 13:07:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 13:07:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 13:07:42] Further information can be found at the LHC@home message board.
[2025-12-02 13:07:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 13:07:42] Checking for apptainer binary...
[2025-12-02 13:07:42] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-12-02 13:07:42] apptainer is not installed, using version from CVMFS
[2025-12-02 13:07:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 13:07:42] pckelar6.cern.ch
[2025-12-02 13:07:42] apptainer works
[2025-12-02 13:07:42] Set ATHENA_PROC_NUMBER=12
[2025-12-02 13:07:42] Set ATHENA_CORE_NUMBER=12
[2025-12-02 13:07:42] Starting ATLAS job with PandaID=6905419586
[2025-12-02 13:07:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 23:36:02]  *** The last 200 lines of the pilot log: ***
[2025-12-02 23:36:02] 2025-12-02 22:35:02,279 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-02 23:36:02] 2025-12-02 22:35:02,287 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2834.2985416666656
[2025-12-02 23:36:02] 2025-12-02 22:35:02,293 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6905419586/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 23:36:02] 2025-12-02 22:35:02,294 | INFO     | extracted standard info from prmon json
[2025-12-02 23:36:02] 2025-12-02 22:35:02,294 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 23:36:02] 2025-12-02 22:35:02,295 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 23:36:02] 2025-12-02 22:35:02,312 | INFO     | fitting pss+swap vs Time
[2025-12-02 23:36:02] 2025-12-02 22:35:02,313 | INFO     | sum of square deviations: 72833583872.63391
[2025-12-02 23:36:02] 2025-12-02 22:35:02,327 | INFO     | sum of deviations: 841781927447.5734
[2025-12-02 23:36:02] 2025-12-02 22:35:02,327 | INFO     | mean x: 1764696095.975689
[2025-12-02 23:36:02] 2025-12-02 22:35:02,327 | INFO     | mean y: 4195060.238249595
[2025-12-02 23:36:02] 2025-12-02 22:35:02,328 | INFO     | intersect: -20391468616.388447
[2025-12-02 23:36:02] 2025-12-02 22:35:02,329 | INFO     | chi2: 6.959614978761291
[2025-12-02 23:36:02] 2025-12-02 22:35:02,330 | INFO     | sum of square deviations: 71077399662.8366
[2025-12-02 23:36:02] 2025-12-02 22:35:02,343 | INFO     | sum of deviations: 1165752687439.1956
[2025-12-02 23:36:02] 2025-12-02 22:35:02,343 | INFO     | mean x: 1764695943.4836602
[2025-12-02 23:36:02] 2025-12-02 22:35:02,343 | INFO     | mean y: 4223175.519607843
[2025-12-02 23:36:02] 2025-12-02 22:35:02,344 | INFO     | intersect: -28938859272.45502
[2025-12-02 23:36:02] 2025-12-02 22:35:02,345 | INFO     | chi2: 3.319967771824377
[2025-12-02 23:36:02] 2025-12-02 22:35:02,345 | INFO     | current chi2=3.319967771824377 (change=52.29667471611652 %)
[2025-12-02 23:36:02] 2025-12-02 22:35:02,346 | INFO     | sum of square deviations: 69349681102.95886
[2025-12-02 23:36:02] 2025-12-02 22:35:02,359 | INFO     | sum of deviations: 1218413671544.7568
[2025-12-02 23:36:02] 2025-12-02 22:35:02,359 | INFO     | mean x: 1764695790.9917629
[2025-12-02 23:36:02] 2025-12-02 22:35:02,359 | INFO     | mean y: 4227801.751235585
[2025-12-02 23:36:02] 2025-12-02 22:35:02,360 | INFO     | intersect: -30999944728.901043
[2025-12-02 23:36:02] 2025-12-02 22:35:02,361 | INFO     | chi2: 3.0600732309302985
[2025-12-02 23:36:02] 2025-12-02 22:35:02,361 | INFO     | current chi2=3.0600732309302985 (change=7.8282248128951615 %)
[2025-12-02 23:36:02] 2025-12-02 22:35:02,361 | INFO     | right removable region: 606
[2025-12-02 23:36:02] 2025-12-02 22:35:02,362 | INFO     | sum of square deviations: 71077032442.8366
[2025-12-02 23:36:02] 2025-12-02 22:35:02,375 | INFO     | sum of deviations: 550660621870.2479
[2025-12-02 23:36:02] 2025-12-02 22:35:02,375 | INFO     | mean x: 1764696248.4836602
[2025-12-02 23:36:02] 2025-12-02 22:35:02,376 | INFO     | mean y: 4220310.924836601
[2025-12-02 23:36:02] 2025-12-02 22:35:02,376 | INFO     | intersect: -13667548194.374405
[2025-12-02 23:36:02] 2025-12-02 22:35:02,377 | INFO     | chi2: 4.197657862506562
[2025-12-02 23:36:02] 2025-12-02 22:35:02,377 | INFO     | current chi2=4.197657862506562 (change=39.685487267376345 %)
[2025-12-02 23:36:02] 2025-12-02 22:35:02,378 | INFO     | sum of square deviations: 69349133327.83533
[2025-12-02 23:36:02] 2025-12-02 22:35:02,391 | INFO     | sum of deviations: 479667533046.2484
[2025-12-02 23:36:02] 2025-12-02 22:35:02,391 | INFO     | mean x: 1764696400.9835255
[2025-12-02 23:36:02] 2025-12-02 22:35:02,392 | INFO     | mean y: 4226574.024711696
[2025-12-02 23:36:02] 2025-12-02 22:35:02,392 | INFO     | intersect: -12201658757.430557
[2025-12-02 23:36:02] 2025-12-02 22:35:02,393 | INFO     | chi2: 4.09642528598543
[2025-12-02 23:36:02] 2025-12-02 22:35:02,393 | INFO     | current chi2=4.09642528598543 (change=2.41164429872525 %)
[2025-12-02 23:36:02] 2025-12-02 22:35:02,393 | INFO     | left removable region: 20
[2025-12-02 23:36:02] 2025-12-02 22:35:02,394 | INFO     | sum of square deviations: 62397904822.5
[2025-12-02 23:36:02] 2025-12-02 22:35:02,406 | INFO     | sum of deviations: 763542903275.0001
[2025-12-02 23:36:02] 2025-12-02 22:35:02,406 | INFO     | mean x: 1764696370.5
[2025-12-02 23:36:02] 2025-12-02 22:35:02,407 | INFO     | mean y: 4268423.317406143
[2025-12-02 23:36:02] 2025-12-02 22:35:02,407 | INFO     | intersect: -21589748138.029697
[2025-12-02 23:36:02] 2025-12-02 22:35:02,408 | INFO     | chi2: 0.09582049471131905
[2025-12-02 23:36:02] 2025-12-02 22:35:02,408 | INFO     | current memory leak: 12.24 B/s (using 586 data points, chi2=0.10)
[2025-12-02 23:36:02] 2025-12-02 22:35:02,409 | INFO     | could have reported an average CPU frequency of 2802 MHz (24 samples)
[2025-12-02 23:36:02] 2025-12-02 22:35:02,409 | INFO     | ..............................
[2025-12-02 23:36:02] 2025-12-02 22:35:02,409 | INFO     | . Timing measurements:
[2025-12-02 23:36:02] 2025-12-02 22:35:02,410 | INFO     | . get job = 0 s
[2025-12-02 23:36:02] 2025-12-02 22:35:02,410 | INFO     | . initial setup = 1 s
[2025-12-02 23:36:02] 2025-12-02 22:35:02,410 | INFO     | . payload setup = 13 s
[2025-12-02 23:36:02] 2025-12-02 22:35:02,410 | INFO     | . stage-in = 0 s
[2025-12-02 23:36:02] 2025-12-02 22:35:02,410 | INFO     | . payload execution = 37583 s
[2025-12-02 23:36:02] 2025-12-02 22:35:02,410 | INFO     | . stage-out = 2 s
[2025-12-02 23:36:02] 2025-12-02 22:35:02,411 | INFO     | . log creation = 0 s
[2025-12-02 23:36:02] 2025-12-02 22:35:02,411 | INFO     | ..............................
[2025-12-02 23:36:02] 2025-12-02 22:35:02,573 | INFO     | 
[2025-12-02 23:36:02] 2025-12-02 22:35:02,573 | INFO     | job summary report
[2025-12-02 23:36:02] 2025-12-02 22:35:02,573 | INFO     | --------------------------------------------------
[2025-12-02 23:36:02] 2025-12-02 22:35:02,573 | INFO     | PanDA job id: 6905419586
[2025-12-02 23:36:02] 2025-12-02 22:35:02,573 | INFO     | task id: 47530725
[2025-12-02 23:36:02] 2025-12-02 22:35:02,574 | INFO     | errors: (none)
[2025-12-02 23:36:02] 2025-12-02 22:35:02,574 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 23:36:02] 2025-12-02 22:35:02,574 | INFO     | pilot state: finished 
[2025-12-02 23:36:02] 2025-12-02 22:35:02,574 | INFO     | transexitcode: 0
[2025-12-02 23:36:02] 2025-12-02 22:35:02,574 | INFO     | exeerrorcode: 0
[2025-12-02 23:36:02] 2025-12-02 22:35:02,574 | INFO     | exeerrordiag: 
[2025-12-02 23:36:02] 2025-12-02 22:35:02,575 | INFO     | exitcode: 0
[2025-12-02 23:36:02] 2025-12-02 22:35:02,575 | INFO     | exitmsg: OK
[2025-12-02 23:36:02] 2025-12-02 22:35:02,575 | INFO     | cpuconsumptiontime: 428927 s
[2025-12-02 23:36:02] 2025-12-02 22:35:02,575 | INFO     | nevents: 1000
[2025-12-02 23:36:02] 2025-12-02 22:35:02,575 | INFO     | neventsw: 0
[2025-12-02 23:36:02] 2025-12-02 22:35:02,575 | INFO     | pid: 1625671
[2025-12-02 23:36:02] 2025-12-02 22:35:02,576 | INFO     | pgrp: 1625671
[2025-12-02 23:36:02] 2025-12-02 22:35:02,576 | INFO     | corecount: 12
[2025-12-02 23:36:02] 2025-12-02 22:35:02,576 | INFO     | event service: False
[2025-12-02 23:36:02] 2025-12-02 22:35:02,576 | INFO     | sizes: {0: 2283574, 1: 2284430, 2: 2284430, 6: 2284720, 12: 2284748, 37600: 2345858, 37602: 2354852, 37605: 2354908, 37613: 2355154}
[2025-12-02 23:36:02] 2025-12-02 22:35:02,576 | INFO     | --------------------------------------------------
[2025-12-02 23:36:02] 2025-12-02 22:35:02,576 | INFO     | 
[2025-12-02 23:36:02] 2025-12-02 22:35:02,577 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-12-02 23:36:02] 2025-12-02 22:35:02,597 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 23:36:02] 2025-12-02 22:35:02,597 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 23:36:02] 2025-12-02 22:35:02,597 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 23:36:02] 2025-12-02 22:35:02,597 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 23:36:02] 2025-12-02 22:35:02,598 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 23:36:02] 2025-12-02 22:35:02,598 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 23:36:02] 2025-12-02 22:35:02,598 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 23:36:02] 2025-12-02 22:35:02,598 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 23:36:02] 2025-12-02 22:35:02,598 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 23:36:02] 2025-12-02 22:35:02,599 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 23:36:02] 2025-12-02 22:35:02,599 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 23:36:02] 2025-12-02 22:35:02,599 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 23:36:02] 2025-12-02 22:35:02,599 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 23:36:02] 2025-12-02 22:35:02,599 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 23:36:02] 2025-12-02 22:35:02,599 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 23:36:02] 2025-12-02 22:35:02,600 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 23:36:02] 2025-12-02 22:35:02,600 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 23:36:02] 2025-12-02 22:35:02,600 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 23:36:02] 2025-12-02 22:35:02,600 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 23:36:02] 2025-12-02 22:35:02,600 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 23:36:02] 2025-12-02 22:35:02,601 | INFO     | job 6905419586 has completed (purged errors)
[2025-12-02 23:36:02] 2025-12-02 22:35:02,601 | INFO     | overall cleanup function is called
[2025-12-02 23:36:02] 2025-12-02 22:35:02,936 | INFO     | PID=1617457 has CPU usage=15.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-02 23:36:02] 2025-12-02 22:35:02,937 | INFO     | .. there are 2 such processes running
[2025-12-02 23:36:02] 2025-12-02 22:35:03,624 | INFO     | --- collectZombieJob: --- 10, [1625671]
[2025-12-02 23:36:02] 2025-12-02 22:35:03,624 | INFO     | zombie collector waiting for pid 1625671
[2025-12-02 23:36:02] 2025-12-02 22:35:03,624 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 23:36:02] 2025-12-02 22:35:03,624 | INFO     | collected zombie processes
[2025-12-02 23:36:02] 2025-12-02 22:35:03,624 | INFO     | will attempt to kill all subprocesses of pid=1625671
[2025-12-02 23:36:02] 2025-12-02 22:35:03,816 | INFO     | process IDs to be killed: [1625671] (in reverse order)
[2025-12-02 23:36:02] 2025-12-02 22:35:03,876 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 23:36:02] 2025-12-02 22:35:03,877 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 23:36:02] 2025-12-02 22:35:03,884 | INFO     | did not find any defunct processes belonging to 1625671
[2025-12-02 23:36:02] 2025-12-02 22:35:03,890 | INFO     | did not find any defunct processes belonging to 1625671
[2025-12-02 23:36:02] 2025-12-02 22:35:03,892 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 23:36:02] 2025-12-02 22:35:03,892 | INFO     | ready for new job
[2025-12-02 23:36:02] 2025-12-02 22:35:03,892 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 23:36:02] 2025-12-02 22:35:03,895 | INFO     | ***************************************
[2025-12-02 23:36:02] 2025-12-02 22:35:03,895 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 23:36:02] 2025-12-02 22:35:03,895 | INFO     | ***************************************
[2025-12-02 23:36:02] 2025-12-02 22:35:03,895 | INFO     | 
[2025-12-02 23:36:02] 2025-12-02 22:35:03,896 | INFO     | architecture information:
[2025-12-02 23:36:02] 2025-12-02 22:35:03,897 | INFO     | executing command: cat /etc/os-release
[2025-12-02 23:36:02] 2025-12-02 22:35:03,911 | INFO     | cat /etc/os-release:
[2025-12-02 23:36:02] NAME="CentOS Linux"
[2025-12-02 23:36:02] VERSION="7 (Core)"
[2025-12-02 23:36:02] ID="centos"
[2025-12-02 23:36:02] ID_LIKE="rhel fedora"
[2025-12-02 23:36:02] VERSION_ID="7"
[2025-12-02 23:36:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 23:36:02] ANSI_COLOR="0;31"
[2025-12-02 23:36:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 23:36:02] HOME_URL="https://www.centos.org/"
[2025-12-02 23:36:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 23:36:02] 
[2025-12-02 23:36:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 23:36:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 23:36:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 23:36:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 23:36:02] 
[2025-12-02 23:36:02] 2025-12-02 22:35:03,912 | INFO     | ***************************************
[2025-12-02 23:36:02] 2025-12-02 22:35:04,415 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-12-02 23:36:02] 2025-12-02 22:35:04,432 | INFO     | sufficient remaining disk space (866089172992 B)
[2025-12-02 23:36:02] 2025-12-02 22:35:04,433 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 23:36:02] 2025-12-02 22:35:04,433 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 23:36:02] 2025-12-02 22:35:04,433 | INFO     | update_server=False
[2025-12-02 23:36:02] 2025-12-02 22:35:04,433 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 23:36:02] 2025-12-02 22:35:04,434 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 23:36:02] 2025-12-02 22:35:04,434 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 23:36:02] 2025-12-02 22:35:04,434 | INFO     | aborting loop
[2025-12-02 23:36:02] 2025-12-02 22:35:04,458 | INFO     | all data control threads have been joined
[2025-12-02 23:36:02] 2025-12-02 22:35:04,681 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 23:36:02] 2025-12-02 22:35:04,698 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 23:36:02] 2025-12-02 22:35:05,060 | INFO     | all payload control threads have been joined
[2025-12-02 23:36:02] 2025-12-02 22:35:05,438 | INFO     | [job] retrieve thread has finished
[2025-12-02 23:36:02] 2025-12-02 22:35:05,439 | INFO     | [job] queue monitor thread has finished
[2025-12-02 23:36:02] 2025-12-02 22:35:05,440 | INFO     | [job] job monitor thread has finished
[2025-12-02 23:36:02] 2025-12-02 22:35:05,463 | INFO     | [data] control thread has finished
[2025-12-02 23:36:02] 2025-12-02 22:35:05,592 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 23:36:02] 2025-12-02 22:35:05,930 | INFO     | [payload] failed_post thread has finished
[2025-12-02 23:36:02] 2025-12-02 22:35:05,974 | INFO     | all job control threads have been joined
[2025-12-02 23:36:02] 2025-12-02 22:35:06,066 | INFO     | [payload] control thread has finished
[2025-12-02 23:36:02] 2025-12-02 22:35:06,100 | INFO     | [payload] validate_post thread has finished
[2025-12-02 23:36:02] 2025-12-02 22:35:06,215 | INFO     | [job] validate thread has finished
[2025-12-02 23:36:02] 2025-12-02 22:35:06,463 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 23:36:02] 2025-12-02 22:35:06,583 | INFO     | [data] copytool_in thread has finished
[2025-12-02 23:36:02] 2025-12-02 22:35:06,685 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 23:36:02] 2025-12-02 22:35:06,703 | INFO     | [data] copytool_out thread has finished
[2025-12-02 23:36:02] 2025-12-02 22:35:06,979 | INFO     | [job] control thread has finished
[2025-12-02 23:36:02] 2025-12-02 22:35:08,687 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 23:36:02] 2025-12-02 22:35:15,377 | INFO     | job.realtimelogging is not enabled
[2025-12-02 23:36:02] 2025-12-02 22:35:16,382 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 23:36:02] 2025-12-02 22:35:35,249 | INFO     | PID=1617457 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 23:36:02] 2025-12-02 22:35:35,250 | INFO     | .. there are 2 such processes running
[2025-12-02 23:36:02] 2025-12-02 22:35:35,251 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 23:36:02] 2025-12-02 22:35:35,251 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 23:36:02] 2025-12-02 22:35:35,251 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 23:36:02] 2025-12-02 22:35:55,238 | INFO     | [monitor] cgroup control has ended
[2025-12-02 23:36:02] 2025-12-02 22:35:57,185 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140001914451776)>', '<ExcThread(monitor, started 140001587201792)>']
[2025-12-02 23:36:02] 2025-12-02 22:35:57,361 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 23:36:02] 2025-12-02 22:35:57,361 | INFO     | [monitor] control thread has ended
[2025-12-02 23:36:02] 2025-12-02 22:36:02,210 | INFO     | all workflow threads have been joined
[2025-12-02 23:36:02] 2025-12-02 22:36:02,211 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 23:36:02] 2025-12-02 22:36:02,211 | INFO     | traces error code: 0
[2025-12-02 23:36:02] 2025-12-02 22:36:02,211 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 23:36:02] 2025-12-02 22:36:02,318 [wrapper] ==== pilot stdout END ====
[2025-12-02 23:36:02] 2025-12-02 22:36:02,321 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 23:36:02] 2025-12-02 22:36:02,324 [wrapper] pilotpid: 1617457
[2025-12-02 23:36:02] 2025-12-02 22:36:02,326 [wrapper] Pilot exit status: 0
[2025-12-02 23:36:02] 2025-12-02 22:36:02,336 [wrapper] pandaids: 6905419586
[2025-12-02 23:36:02] 2025-12-02 22:36:02,375 [wrapper] cleanup supervisor_pilot 1850596 1617458
[2025-12-02 23:36:02] 2025-12-02 22:36:02,378 [wrapper] Test setup, not cleaning
[2025-12-02 23:36:02] 2025-12-02 22:36:02,381 [wrapper] apfmon messages muted
[2025-12-02 23:36:02] 2025-12-02 22:36:02,383 [wrapper] ==== wrapper stdout END ====
[2025-12-02 23:36:02] 2025-12-02 22:36:02,386 [wrapper] ==== wrapper stderr END ====
[2025-12-02 23:36:02]  *** Error codes and diagnostics ***
[2025-12-02 23:36:02]     "exeErrorCode": 0,
[2025-12-02 23:36:02]     "exeErrorDiag": "",
[2025-12-02 23:36:02]     "pilotErrorCode": 0,
[2025-12-02 23:36:02]     "pilotErrorDiag": "",
[2025-12-02 23:36:02]  *** Listing of results directory ***
[2025-12-02 23:36:02] total 1063636
[2025-12-02 23:36:02] -rwx------. 1 boinc boinc     36292 Nov 30 01:21 runpilot2-wrapper.sh
[2025-12-02 23:36:02] -rw-r--r--. 1 boinc boinc    576529 Nov 30 01:24 pilot3.tar.gz
[2025-12-02 23:36:02] -rw-r--r--. 1 boinc boinc      5112 Nov 30 01:27 queuedata.json
[2025-12-02 23:36:02] -rw-r--r--. 1 boinc boinc       100 Dec  2 13:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 23:36:02] -rwxr-xr-x. 1 boinc boinc      7986 Dec  2 13:07 run_atlas
[2025-12-02 23:36:02] -rw-r--r--. 1 boinc boinc       105 Dec  2 13:07 job.xml
[2025-12-02 23:36:02] -rw-r--r--. 2 boinc boinc 374928108 Dec  2 13:07 EVNT.47530720._000120.pool.root.1
[2025-12-02 23:36:02] -rw-r--r--. 1 boinc boinc      6293 Dec  2 13:07 init_data.xml
[2025-12-02 23:36:02] -rw-r--r--. 2 boinc boinc     15847 Dec  2 13:07 start_atlas.sh
[2025-12-02 23:36:02] drwxrwx--x. 2 boinc boinc        68 Dec  2 13:07 shared
[2025-12-02 23:36:02] -rw-r--r--. 2 boinc boinc    590128 Dec  2 13:07 input.tar.gz
[2025-12-02 23:36:02] -rw-r--r--. 1 boinc boinc         0 Dec  2 13:07 boinc_lockfile
[2025-12-02 23:36:02] -rw-r--r--. 1 boinc boinc      2879 Dec  2 13:07 pandaJob.out
[2025-12-02 23:36:02] -rw-------. 1 boinc boinc    986791 Dec  2 13:07 agis_schedconf.cvmfs.json
[2025-12-02 23:36:02] drwx------. 5 boinc boinc      4096 Dec  2 13:07 pilot3
[2025-12-02 23:36:02] -rw-r--r--. 1 boinc boinc       533 Dec  2 23:25 boinc_task_state.xml
[2025-12-02 23:36:02] -rw-------. 1 boinc boinc 694932822 Dec  2 23:34 HITS.47530725._002575.pool.root.1
[2025-12-02 23:36:02] -rw-------. 1 boinc boinc      1037 Dec  2 23:34 memory_monitor_summary.json
[2025-12-02 23:36:02] -rw-------. 1 boinc boinc   1516240 Dec  2 23:34 agis_ddmendpoints.agis.ALL.json
[2025-12-02 23:36:02] -rw-------. 1 boinc boinc   2453327 Dec  2 23:34 log.47530725._002575.job.log.tgz.1
[2025-12-02 23:36:02] -rw-------. 1 boinc boinc     28288 Dec  2 23:35 heartbeat.json
[2025-12-02 23:36:02] -rw-------. 1 boinc boinc        95 Dec  2 23:35 pilot_heartbeat.json
[2025-12-02 23:36:02] -rw-r--r--. 1 boinc boinc      8192 Dec  2 23:35 boinc_mmap_file
[2025-12-02 23:36:02] -rw-r--r--. 1 boinc boinc        29 Dec  2 23:35 wrapper_checkpoint.txt
[2025-12-02 23:36:02] -rw-------. 1 boinc boinc      4896 Dec  2 23:36 pilotlog.txt
[2025-12-02 23:36:02] -rw-------. 1 boinc boinc   5232637 Dec  2 23:36 log.47530725._002575.job.log.1
[2025-12-02 23:36:02] -rw-------. 1 boinc boinc       353 Dec  2 23:36 output.list
[2025-12-02 23:36:02] -rw-r--r--. 1 boinc boinc       620 Dec  2 23:36 runtime_log
[2025-12-02 23:36:02] -rw-------. 1 boinc boinc   7720960 Dec  2 23:36 result.tar.gz
[2025-12-02 23:36:02] -rw-r--r--. 1 boinc boinc      8842 Dec  2 23:36 runtime_log.err
[2025-12-02 23:36:02] -rw-------. 1 boinc boinc       665 Dec  2 23:36 0dFMDm3Mkj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdZPKDmABd7Qm.diag
[2025-12-02 23:36:02] -rw-r--r--. 1 boinc boinc     21468 Dec  2 23:36 stderr.txt
[2025-12-02 23:36:02] HITS file was successfully produced:
[2025-12-02 23:36:02] -rw-------. 1 boinc boinc 694932822 Dec  2 23:34 shared/HITS.pool.root.1
[2025-12-02 23:36:02]  *** Contents of shared directory: ***
[2025-12-02 23:36:02] total 1052928
[2025-12-02 23:36:02] -rw-r--r--. 2 boinc boinc 374928108 Dec  2 13:07 ATLAS.root_0
[2025-12-02 23:36:02] -rw-r--r--. 2 boinc boinc     15847 Dec  2 13:07 start_atlas.sh
[2025-12-02 23:36:02] -rw-r--r--. 2 boinc boinc    590128 Dec  2 13:07 input.tar.gz
[2025-12-02 23:36:02] -rw-------. 1 boinc boinc 694932822 Dec  2 23:34 HITS.pool.root.1
[2025-12-02 23:36:02] -rw-------. 1 boinc boinc   7720960 Dec  2 23:36 result.tar.gz
23:36:03 (1613636): run_atlas exited; CPU time 428832.977995
23:36:03 (1613636): called boinc_finish(0)

</stderr_txt>
]]>

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