Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:20:18 (21163): wrapper (7.7.26015): starting
00:20:18 (21163): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 00:20:18] Arguments: --nthreads 8
[2025-12-03 00:20:18] Threads: 8
[2025-12-03 00:20:18] Checking for CVMFS
[2025-12-03 00:20:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 00:20:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 00:20:20] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 00:20:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 00:20:21] 2.11.2.0 19741 294488 140560 153574 1 71 15360124 25165825 2262 130560 12 166424323 99.891 83749701 2657 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-03 00:20:21] CVMFS is ok
[2025-12-03 00:20:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 00:20:21] Checking for apptainer binary...
[2025-12-03 00:20:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 00:20:21] Running /usr/bin/apptainer --version
[2025-12-03 00:20:21] apptainer version 1.3.2-1.el7
[2025-12-03 00:20:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 00:20:39] cg-vwn339.simple-grid.lan
[2025-12-03 00:20:39] apptainer works
[2025-12-03 00:20:39] Set ATHENA_PROC_NUMBER=8
[2025-12-03 00:20:39] Set ATHENA_CORE_NUMBER=8
[2025-12-03 00:20:39] Starting ATLAS job with PandaID=6905344751
[2025-12-03 00:20:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/35 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 20:53:37]  *** The last 200 lines of the pilot log: ***
[2025-12-03 20:53:37] 2025-12-03 19:52:45,959 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 20:53:37] 2025-12-03 19:52:47,090 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 20:53:37] 2025-12-03 19:52:47,091 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-03 20:53:37] 2025-12-03 19:52:47,093 | INFO     | using path: /var/lib/boinc/slots/35/PanDA_Pilot-6905344751/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 20:53:37] 2025-12-03 19:52:47,094 | INFO     | extracted standard info from prmon json
[2025-12-03 20:53:37] 2025-12-03 19:52:47,094 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 20:53:37] 2025-12-03 19:52:47,094 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 20:53:37] 2025-12-03 19:52:47,135 | INFO     | fitting pss+swap vs Time
[2025-12-03 20:53:37] 2025-12-03 19:52:47,137 | INFO     | sum of square deviations: 530483842117.9899
[2025-12-03 20:53:37] 2025-12-03 19:52:47,203 | INFO     | sum of deviations: 2964299486312.3403
[2025-12-03 20:53:37] 2025-12-03 19:52:47,203 | INFO     | mean x: 1764754958.5501673
[2025-12-03 20:53:37] 2025-12-03 19:52:47,203 | INFO     | mean y: 3344507.294314381
[2025-12-03 20:53:37] 2025-12-03 19:52:47,204 | INFO     | intersect: -9857959083.426329
[2025-12-03 20:53:37] 2025-12-03 19:52:47,205 | INFO     | chi2: 19.810485476304873
[2025-12-03 20:53:37] 2025-12-03 19:52:47,210 | INFO     | sum of square deviations: 523858780037.4528
[2025-12-03 20:53:37] 2025-12-03 19:52:47,261 | INFO     | sum of deviations: 3468347712356.6865
[2025-12-03 20:53:37] 2025-12-03 19:52:47,262 | INFO     | mean x: 1764754806.054576
[2025-12-03 20:53:37] 2025-12-03 19:52:47,262 | INFO     | mean y: 3356111.7741393787
[2025-12-03 20:53:37] 2025-12-03 19:52:47,262 | INFO     | intersect: -11680676928.60414
[2025-12-03 20:53:37] 2025-12-03 19:52:47,264 | INFO     | chi2: 16.188342874132687
[2025-12-03 20:53:37] 2025-12-03 19:52:47,264 | INFO     | current chi2=16.188342874132687 (change=18.28396687453518 %)
[2025-12-03 20:53:37] 2025-12-03 19:52:47,264 | INFO     | right removable region: 1190
[2025-12-03 20:53:37] 2025-12-03 19:52:47,266 | INFO     | sum of square deviations: 523858013877.4525
[2025-12-03 20:53:37] 2025-12-03 19:52:47,290 | INFO     | time since job start (73707s) is within the limit (172800.0s)
[2025-12-03 20:53:37] 2025-12-03 19:52:47,328 | INFO     | sum of deviations: 2355977919046.044
[2025-12-03 20:53:37] 2025-12-03 19:52:47,329 | INFO     | mean x: 1764755111.054576
[2025-12-03 20:53:37] 2025-12-03 19:52:47,329 | INFO     | mean y: 3358508.7993282955
[2025-12-03 20:53:37] 2025-12-03 19:52:47,329 | INFO     | intersect: -7933380004.359808
[2025-12-03 20:53:37] 2025-12-03 19:52:47,330 | INFO     | chi2: 14.75035805694246
[2025-12-03 20:53:37] 2025-12-03 19:52:47,331 | INFO     | current chi2=14.75035805694246 (change=25.54267246713757 %)
[2025-12-03 20:53:37] 2025-12-03 19:52:47,332 | INFO     | sum of square deviations: 517287582024.36774
[2025-12-03 20:53:37] 2025-12-03 19:52:47,382 | INFO     | sum of deviations: 1822210210391.1006
[2025-12-03 20:53:37] 2025-12-03 19:52:47,383 | INFO     | mean x: 1764755263.559022
[2025-12-03 20:53:37] 2025-12-03 19:52:47,383 | INFO     | mean y: 3370897.5699831364
[2025-12-03 20:53:37] 2025-12-03 19:52:47,383 | INFO     | intersect: -6213200255.199741
[2025-12-03 20:53:37] 2025-12-03 19:52:47,385 | INFO     | chi2: 10.990811192993784
[2025-12-03 20:53:37] 2025-12-03 19:52:47,385 | INFO     | current chi2=10.990811192993784 (change=25.487834596524888 %)
[2025-12-03 20:53:37] 2025-12-03 19:52:47,387 | INFO     | sum of square deviations: 510772386099.3628
[2025-12-03 20:53:37] 2025-12-03 19:52:47,447 | INFO     | sum of deviations: 1495363132630.3564
[2025-12-03 20:53:37] 2025-12-03 19:52:47,447 | INFO     | mean x: 1764755416.0626588
[2025-12-03 20:53:37] 2025-12-03 19:52:47,447 | INFO     | mean y: 3378540.751905165
[2025-12-03 20:53:37] 2025-12-03 19:52:47,448 | INFO     | intersect: -5163208884.701591
[2025-12-03 20:53:37] 2025-12-03 19:52:47,449 | INFO     | chi2: 9.432212521434076
[2025-12-03 20:53:37] 2025-12-03 19:52:47,449 | INFO     | current chi2=9.432212521434076 (change=14.180924812476567 %)
[2025-12-03 20:53:37] 2025-12-03 19:52:47,449 | INFO     | left removable region: 30
[2025-12-03 20:53:37] 2025-12-03 19:52:47,451 | INFO     | sum of square deviations: 484007612204.88855
[2025-12-03 20:53:37] 2025-12-03 19:52:47,489 | INFO     | sum of deviations: 1899849079783.9695
[2025-12-03 20:53:37] 2025-12-03 19:52:47,489 | INFO     | mean x: 1764755690.5663793
[2025-12-03 20:53:37] 2025-12-03 19:52:47,490 | INFO     | mean y: 3397327.701724138
[2025-12-03 20:53:37] 2025-12-03 19:52:47,490 | INFO     | intersect: -6923703383.571337
[2025-12-03 20:53:37] 2025-12-03 19:52:47,491 | INFO     | chi2: 5.000064285773965
[2025-12-03 20:53:37] 2025-12-03 19:52:47,491 | INFO     | current memory leak: 3.93 B/s (using 1160 data points, chi2=5.00)
[2025-12-03 20:53:37] 2025-12-03 19:52:47,493 | INFO     | could have reported an average CPU frequency of 1999 MHz (41 samples)
[2025-12-03 20:53:37] 2025-12-03 19:52:47,493 | INFO     | ..............................
[2025-12-03 20:53:37] 2025-12-03 19:52:47,493 | INFO     | . Timing measurements:
[2025-12-03 20:53:37] 2025-12-03 19:52:47,493 | INFO     | . get job = 0 s
[2025-12-03 20:53:37] 2025-12-03 19:52:47,493 | INFO     | . initial setup = 8 s
[2025-12-03 20:53:37] 2025-12-03 19:52:47,494 | INFO     | . payload setup = 281 s
[2025-12-03 20:53:37] 2025-12-03 19:52:47,494 | INFO     | . stage-in = 0 s
[2025-12-03 20:53:37] 2025-12-03 19:52:47,494 | INFO     | . payload execution = 73113 s
[2025-12-03 20:53:37] 2025-12-03 19:52:47,494 | INFO     | . stage-out = 4 s
[2025-12-03 20:53:37] 2025-12-03 19:52:47,494 | INFO     | . log creation = 1 s
[2025-12-03 20:53:37] 2025-12-03 19:52:47,494 | INFO     | ..............................
[2025-12-03 20:53:37] 2025-12-03 19:52:47,629 | INFO     | 
[2025-12-03 20:53:37] 2025-12-03 19:52:47,629 | INFO     | job summary report
[2025-12-03 20:53:37] 2025-12-03 19:52:47,629 | INFO     | --------------------------------------------------
[2025-12-03 20:53:37] 2025-12-03 19:52:47,629 | INFO     | PanDA job id: 6905344751
[2025-12-03 20:53:37] 2025-12-03 19:52:47,629 | INFO     | task id: 47530725
[2025-12-03 20:53:37] 2025-12-03 19:52:47,629 | INFO     | errors: (none)
[2025-12-03 20:53:37] 2025-12-03 19:52:47,630 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 20:53:37] 2025-12-03 19:52:47,630 | INFO     | pilot state: finished 
[2025-12-03 20:53:37] 2025-12-03 19:52:47,630 | INFO     | transexitcode: 0
[2025-12-03 20:53:37] 2025-12-03 19:52:47,630 | INFO     | exeerrorcode: 0
[2025-12-03 20:53:37] 2025-12-03 19:52:47,630 | INFO     | exeerrordiag: 
[2025-12-03 20:53:37] 2025-12-03 19:52:47,630 | INFO     | exitcode: 0
[2025-12-03 20:53:37] 2025-12-03 19:52:47,630 | INFO     | exitmsg: OK
[2025-12-03 20:53:37] 2025-12-03 19:52:47,630 | INFO     | cpuconsumptiontime: 273009 s
[2025-12-03 20:53:37] 2025-12-03 19:52:47,630 | INFO     | nevents: 1000
[2025-12-03 20:53:37] 2025-12-03 19:52:47,630 | INFO     | neventsw: 0
[2025-12-03 20:53:37] 2025-12-03 19:52:47,631 | INFO     | pid: 32232
[2025-12-03 20:53:37] 2025-12-03 19:52:47,631 | INFO     | pgrp: 32232
[2025-12-03 20:53:37] 2025-12-03 19:52:47,631 | INFO     | corecount: 8
[2025-12-03 20:53:37] 2025-12-03 19:52:47,631 | INFO     | event service: False
[2025-12-03 20:53:37] 2025-12-03 19:52:47,631 | INFO     | sizes: {0: 2283574, 1: 2284176, 2: 2284459, 13: 2284459, 24: 2284515, 35: 2284543, 45: 2284699, 56: 2284727, 67: 2284755, 78: 2284783, 88: 2284839, 99: 2285147, 10
[2025-12-03 20:53:37] 2025-12-03 19:52:47,631 | INFO     | --------------------------------------------------
[2025-12-03 20:53:37] 2025-12-03 19:52:47,631 | INFO     | 
[2025-12-03 20:53:37] 2025-12-03 19:52:47,632 | INFO     | executing command: ls -lF /var/lib/boinc/slots/35
[2025-12-03 20:53:37] 2025-12-03 19:52:47,974 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 20:53:37] 2025-12-03 19:52:47,975 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 20:53:37] 2025-12-03 19:52:47,975 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 20:53:37] 2025-12-03 19:52:47,975 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 20:53:37] 2025-12-03 19:52:47,975 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 20:53:37] 2025-12-03 19:52:47,975 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 20:53:37] 2025-12-03 19:52:47,975 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 20:53:37] 2025-12-03 19:52:47,975 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 20:53:37] 2025-12-03 19:52:47,976 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 20:53:37] 2025-12-03 19:52:47,976 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 20:53:37] 2025-12-03 19:52:47,976 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 20:53:37] 2025-12-03 19:52:47,976 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 20:53:37] 2025-12-03 19:52:47,976 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 20:53:37] 2025-12-03 19:52:47,976 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 20:53:37] 2025-12-03 19:52:47,976 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 20:53:37] 2025-12-03 19:52:47,976 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 20:53:37] 2025-12-03 19:52:47,976 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 20:53:37] 2025-12-03 19:52:47,976 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 20:53:37] 2025-12-03 19:52:47,977 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 20:53:37] 2025-12-03 19:52:47,977 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 20:53:37] 2025-12-03 19:52:47,977 | INFO     | job 6905344751 has completed (purged errors)
[2025-12-03 20:53:37] 2025-12-03 19:52:47,977 | INFO     | overall cleanup function is called
[2025-12-03 20:53:37] 2025-12-03 19:52:48,999 | INFO     | --- collectZombieJob: --- 10, [32232]
[2025-12-03 20:53:37] 2025-12-03 19:52:48,999 | INFO     | zombie collector waiting for pid 32232
[2025-12-03 20:53:37] 2025-12-03 19:52:48,999 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 20:53:37] 2025-12-03 19:52:48,999 | INFO     | collected zombie processes
[2025-12-03 20:53:37] 2025-12-03 19:52:49,000 | INFO     | will attempt to kill all subprocesses of pid=32232
[2025-12-03 20:53:37] 2025-12-03 19:52:49,119 | INFO     | process IDs to be killed: [32232] (in reverse order)
[2025-12-03 20:53:37] 2025-12-03 19:52:49,597 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 20:53:37] 2025-12-03 19:52:49,597 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 20:53:37] 2025-12-03 19:52:49,606 | INFO     | did not find any defunct processes belonging to 32232
[2025-12-03 20:53:37] 2025-12-03 19:52:49,609 | INFO     | did not find any defunct processes belonging to 32232
[2025-12-03 20:53:37] 2025-12-03 19:52:49,626 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 20:53:37] 2025-12-03 19:52:49,626 | INFO     | ready for new job
[2025-12-03 20:53:37] 2025-12-03 19:52:49,627 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 20:53:37] 2025-12-03 19:52:49,631 | INFO     | ***************************************
[2025-12-03 20:53:37] 2025-12-03 19:52:49,631 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 20:53:37] 2025-12-03 19:52:49,632 | INFO     | ***************************************
[2025-12-03 20:53:37] 2025-12-03 19:52:49,632 | INFO     | 
[2025-12-03 20:53:37] 2025-12-03 19:52:49,632 | INFO     | pilot is running in a VM
[2025-12-03 20:53:37] 2025-12-03 19:52:49,632 | INFO     | architecture information:
[2025-12-03 20:53:37] 2025-12-03 19:52:49,636 | INFO     | executing command: cat /etc/os-release
[2025-12-03 20:53:37] 2025-12-03 19:52:49,803 | INFO     | cat /etc/os-release:
[2025-12-03 20:53:37] NAME="CentOS Linux"
[2025-12-03 20:53:37] VERSION="7 (Core)"
[2025-12-03 20:53:37] ID="centos"
[2025-12-03 20:53:37] ID_LIKE="rhel fedora"
[2025-12-03 20:53:37] VERSION_ID="7"
[2025-12-03 20:53:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 20:53:37] ANSI_COLOR="0;31"
[2025-12-03 20:53:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 20:53:37] HOME_URL="https://www.centos.org/"
[2025-12-03 20:53:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 20:53:37] 
[2025-12-03 20:53:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 20:53:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 20:53:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 20:53:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 20:53:37] 
[2025-12-03 20:53:37] 2025-12-03 19:52:49,804 | INFO     | ***************************************
[2025-12-03 20:53:37] 2025-12-03 19:52:50,307 | INFO     | executing command: df -mP /var/lib/boinc/slots/35
[2025-12-03 20:53:37] 2025-12-03 19:52:50,422 | INFO     | sufficient remaining disk space (491758026752 B)
[2025-12-03 20:53:37] 2025-12-03 19:52:50,423 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 20:53:37] 2025-12-03 19:52:50,423 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 20:53:37] 2025-12-03 19:52:50,423 | INFO     | update_server=False
[2025-12-03 20:53:37] 2025-12-03 19:52:50,423 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 20:53:37] 2025-12-03 19:52:50,424 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 20:53:37] 2025-12-03 19:52:50,424 | INFO     | aborting loop
[2025-12-03 20:53:37] 2025-12-03 19:52:50,424 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 20:53:37] 2025-12-03 19:52:50,681 | INFO     | all data control threads have been joined
[2025-12-03 20:53:37] 2025-12-03 19:52:50,834 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 20:53:37] 2025-12-03 19:52:50,952 | INFO     | all payload control threads have been joined
[2025-12-03 20:53:37] 2025-12-03 19:52:51,429 | INFO     | [job] retrieve thread has finished
[2025-12-03 20:53:37] 2025-12-03 19:52:51,430 | INFO     | [job] job monitor thread has finished
[2025-12-03 20:53:37] 2025-12-03 19:52:51,559 | INFO     | all job control threads have been joined
[2025-12-03 20:53:37] 2025-12-03 19:52:51,667 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 20:53:37] 2025-12-03 19:52:51,687 | INFO     | [data] control thread has finished
[2025-12-03 20:53:37] 2025-12-03 19:52:51,757 | INFO     | [payload] failed_post thread has finished
[2025-12-03 20:53:37] 2025-12-03 19:52:51,931 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 20:53:37] 2025-12-03 19:52:51,958 | INFO     | [payload] control thread has finished
[2025-12-03 20:53:37] 2025-12-03 19:52:52,093 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 20:53:37] 2025-12-03 19:52:52,164 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 20:53:37] 2025-12-03 19:52:52,302 | INFO     | [job] validate thread has finished
[2025-12-03 20:53:37] 2025-12-03 19:52:52,305 | INFO     | [data] copytool_in thread has finished
[2025-12-03 20:53:37] 2025-12-03 19:52:52,565 | INFO     | [job] control thread has finished
[2025-12-03 20:53:37] 2025-12-03 19:52:52,644 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 20:53:37] 2025-12-03 19:52:52,749 | INFO     | [payload] validate_post thread has finished
[2025-12-03 20:53:37] 2025-12-03 19:52:52,841 | INFO     | [data] copytool_out thread has finished
[2025-12-03 20:53:37] 2025-12-03 19:52:53,650 | INFO     | [job] queue monitor thread has finished
[2025-12-03 20:53:37] 2025-12-03 19:52:54,433 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 20:53:37] 2025-12-03 19:53:20,440 | INFO     | PID=25001 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 20:53:37] 2025-12-03 19:53:20,441 | INFO     | .. there are 9 such processes running
[2025-12-03 20:53:37] 2025-12-03 19:53:20,442 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 20:53:37] 2025-12-03 19:53:20,442 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 20:53:37] 2025-12-03 19:53:20,442 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 20:53:37] 2025-12-03 19:53:28,184 | INFO     | [monitor] cgroup control has ended
[2025-12-03 20:53:37] 2025-12-03 19:53:28,527 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139685628684096)>', '<ExcThread(monitor, started 139685179401984)>']
[2025-12-03 20:53:37] 2025-12-03 19:53:29,495 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 20:53:37] 2025-12-03 19:53:29,495 | INFO     | [monitor] control thread has ended
[2025-12-03 20:53:37] 2025-12-03 19:53:33,553 | INFO     | all workflow threads have been joined
[2025-12-03 20:53:37] 2025-12-03 19:53:33,553 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 20:53:37] 2025-12-03 19:53:33,553 | INFO     | traces error code: 0
[2025-12-03 20:53:37] 2025-12-03 19:53:33,554 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 20:53:37] 2025-12-03 19:53:33,957 [wrapper] ==== pilot stdout END ====
[2025-12-03 20:53:37] 2025-12-03 19:53:34,061 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 20:53:37] 2025-12-03 19:53:34,162 [wrapper] pilotpid: 25001
[2025-12-03 20:53:37] 2025-12-03 19:53:34,263 [wrapper] Pilot exit status: 0
[2025-12-03 20:53:37] 2025-12-03 19:53:34,713 [wrapper] pandaids: 6905344751
[2025-12-03 20:53:37] 2025-12-03 19:53:35,527 [wrapper] cleanup supervisor_pilot   760 25002
[2025-12-03 20:53:37] 2025-12-03 19:53:35,547 [wrapper] Test setup, not cleaning
[2025-12-03 20:53:37] 2025-12-03 19:53:35,575 [wrapper] apfmon messages muted
[2025-12-03 20:53:37] 2025-12-03 19:53:35,628 [wrapper] ==== wrapper stdout END ====
[2025-12-03 20:53:37] 2025-12-03 19:53:35,648 [wrapper] ==== wrapper stderr END ====
[2025-12-03 20:53:37]  *** Error codes and diagnostics ***
[2025-12-03 20:53:37]     "exeErrorCode": 0,
[2025-12-03 20:53:37]     "exeErrorDiag": "",
[2025-12-03 20:53:37]     "pilotErrorCode": 0,
[2025-12-03 20:53:37]     "pilotErrorDiag": "",
[2025-12-03 20:53:37]  *** Listing of results directory ***
[2025-12-03 20:53:37] total 1090524
[2025-12-03 20:53:37] -rwx------. 1 boinc boinc     36292 Nov 30 01:21 runpilot2-wrapper.sh
[2025-12-03 20:53:37] -rw-r--r--. 1 boinc boinc    576529 Nov 30 01:24 pilot3.tar.gz
[2025-12-03 20:53:37] -rw-r--r--. 1 boinc boinc      5112 Nov 30 01:27 queuedata.json
[2025-12-03 20:53:37] -rw-r--r--. 1 boinc boinc       100 Dec  3 00:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 20:53:37] -rwxr-xr-x. 1 boinc boinc      7986 Dec  3 00:20 run_atlas
[2025-12-03 20:53:37] -rw-r--r--. 1 boinc boinc       105 Dec  3 00:20 job.xml
[2025-12-03 20:53:37] -rw-r--r--. 1 boinc boinc      6388 Dec  3 00:20 init_data.xml
[2025-12-03 20:53:37] -rw-r--r--. 2 boinc boinc 379024754 Dec  3 00:20 EVNT.47530720._000109.pool.root.1
[2025-12-03 20:53:37] -rw-r--r--. 2 boinc boinc     15847 Dec  3 00:20 start_atlas.sh
[2025-12-03 20:53:37] drwxrwx--x. 2 boinc boinc        68 Dec  3 00:20 shared
[2025-12-03 20:53:37] -rw-r--r--. 2 boinc boinc    590132 Dec  3 00:20 input.tar.gz
[2025-12-03 20:53:37] -rw-r--r--. 1 boinc boinc         0 Dec  3 00:20 boinc_lockfile
[2025-12-03 20:53:37] -rw-r--r--. 1 boinc boinc      2879 Dec  3 00:20 pandaJob.out
[2025-12-03 20:53:37] -rw-------. 1 boinc boinc    989284 Dec  3 00:24 agis_schedconf.cvmfs.json
[2025-12-03 20:53:37] drwx------. 5 boinc boinc      4096 Dec  3 00:24 pilot3
[2025-12-03 20:53:37] -rw-r--r--. 1 boinc boinc       533 Dec  3 20:34 boinc_task_state.xml
[2025-12-03 20:53:37] -rw-------. 1 boinc boinc 709214311 Dec  3 20:50 HITS.47530725._002461.pool.root.1
[2025-12-03 20:53:37] -rw-------. 1 boinc boinc      1032 Dec  3 20:50 memory_monitor_summary.json
[2025-12-03 20:53:37] -rw-------. 1 boinc boinc   1516240 Dec  3 20:51 agis_ddmendpoints.agis.ALL.json
[2025-12-03 20:53:37] -rw-------. 1 boinc boinc   2421748 Dec  3 20:51 log.47530725._002461.job.log.tgz.1
[2025-12-03 20:53:37] -rw-------. 1 boinc boinc     28336 Dec  3 20:52 heartbeat.json
[2025-12-03 20:53:37] -rw-------. 1 boinc boinc        95 Dec  3 20:53 pilot_heartbeat.json
[2025-12-03 20:53:37] -rw-------. 1 boinc boinc      4885 Dec  3 20:53 pilotlog.txt
[2025-12-03 20:53:37] -rw-------. 1 boinc boinc   9832334 Dec  3 20:53 log.47530725._002461.job.log.1
[2025-12-03 20:53:37] -rw-r--r--. 1 boinc boinc      8192 Dec  3 20:53 boinc_mmap_file
[2025-12-03 20:53:37] -rw-r--r--. 1 boinc boinc        29 Dec  3 20:53 wrapper_checkpoint.txt
[2025-12-03 20:53:37] -rw-------. 1 boinc boinc       353 Dec  3 20:53 output.list
[2025-12-03 20:53:37] -rw-r--r--. 1 boinc boinc       620 Dec  3 20:53 runtime_log
[2025-12-03 20:53:37] -rw-------. 1 boinc boinc  12298240 Dec  3 20:53 result.tar.gz
[2025-12-03 20:53:37] -rw-r--r--. 1 boinc boinc      8833 Dec  3 20:53 runtime_log.err
[2025-12-03 20:53:37] -rw-------. 1 boinc boinc       661 Dec  3 20:53 0TwKDmuMkj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgGMKDmkyp84n.diag
[2025-12-03 20:53:37] -rw-r--r--. 1 boinc boinc     21017 Dec  3 20:53 stderr.txt
[2025-12-03 20:53:37] HITS file was successfully produced:
[2025-12-03 20:53:37] -rw-------. 1 boinc boinc 709214311 Dec  3 20:50 shared/HITS.pool.root.1
[2025-12-03 20:53:37]  *** Contents of shared directory: ***
[2025-12-03 20:53:37] total 1075348
[2025-12-03 20:53:37] -rw-r--r--. 2 boinc boinc 379024754 Dec  3 00:20 ATLAS.root_0
[2025-12-03 20:53:37] -rw-r--r--. 2 boinc boinc     15847 Dec  3 00:20 start_atlas.sh
[2025-12-03 20:53:37] -rw-r--r--. 2 boinc boinc    590132 Dec  3 00:20 input.tar.gz
[2025-12-03 20:53:37] -rw-------. 1 boinc boinc 709214311 Dec  3 20:50 HITS.pool.root.1
[2025-12-03 20:53:37] -rw-------. 1 boinc boinc  12298240 Dec  3 20:53 result.tar.gz
20:53:39 (21163): run_atlas exited; CPU time 273394.002471
20:53:39 (21163): called boinc_finish(0)

</stderr_txt>
]]>

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