Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:39:15 (2197407): wrapper (7.7.26015): starting
17:39:15 (2197407): wrapper: running run_atlas (--nthreads 12)
[2025-12-01 17:39:15] Arguments: --nthreads 12
[2025-12-01 17:39:15] Threads: 12
[2025-12-01 17:39:15] Checking for CVMFS
[2025-12-01 17:39:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 17:39:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 17:39:15] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 17:39:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 17:39:15] 2.11.5.0 3459277 1182 195624 153539 3 587 30853034 45568001 16325 130560 0 8870473 99.516 15806289 22201 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-12-01 17:39:15] CVMFS is ok
[2025-12-01 17:39:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 17:39:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 17:39:15] Further information can be found at the LHC@home message board.
[2025-12-01 17:39:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 17:39:15] Checking for apptainer binary...
[2025-12-01 17:39:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 17:39:15] Running /usr/bin/apptainer --version
[2025-12-01 17:39:15] apptainer version 1.4.1-1.el9
[2025-12-01 17:39:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 17:39:16] wns0066.triumf.lcg
[2025-12-01 17:39:16] apptainer works
[2025-12-01 17:39:16] Set ATHENA_PROC_NUMBER=12
[2025-12-01 17:39:16] Set ATHENA_CORE_NUMBER=12
[2025-12-01 17:39:16] Starting ATLAS job with PandaID=6905419491
[2025-12-01 17:39:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 17:44:38]  *** The last 200 lines of the pilot log: ***
[2025-12-01 17:44:38] 2025-12-02 01:43:59,420 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-01 17:44:38] 2025-12-02 01:43:59,420 | WARNING  | wrong length of table data, x=[1764639608.0, 1764639669.0], y=[1226.0, 804621.0] (must be same and length>=4)
[2025-12-01 17:44:38] 2025-12-02 01:43:59,421 | INFO     | could have reported an average CPU frequency of 2698 MHz (4 samples)
[2025-12-01 17:44:38] 2025-12-02 01:43:59,421 | INFO     | ..............................
[2025-12-01 17:44:38] 2025-12-02 01:43:59,421 | INFO     | . Timing measurements:
[2025-12-01 17:44:38] 2025-12-02 01:43:59,421 | INFO     | . get job = 0 s
[2025-12-01 17:44:38] 2025-12-02 01:43:59,421 | INFO     | . initial setup = 3 s
[2025-12-01 17:44:38] 2025-12-02 01:43:59,421 | INFO     | . payload setup = 12 s
[2025-12-01 17:44:38] 2025-12-02 01:43:59,421 | INFO     | . stage-in = 0 s
[2025-12-01 17:44:38] 2025-12-02 01:43:59,422 | INFO     | . payload execution = 110 s
[2025-12-01 17:44:38] 2025-12-02 01:43:59,422 | INFO     | . stage-out = 0 s
[2025-12-01 17:44:38] 2025-12-02 01:43:59,422 | INFO     | . log creation = 0 s
[2025-12-01 17:44:38] 2025-12-02 01:43:59,422 | INFO     | ..............................
[2025-12-01 17:44:38] 2025-12-02 01:43:59,422 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-01 17:44:38] 2025-12-02 01:43:59,422 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6905419491/pilotlog.txt
[2025-12-01 17:44:38] 2025-12-02 01:43:59,435 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-12-01 17:44:38] - Log from pilotlog.txt -
[2025-12-01 17:44:38] 2025-12-02 01:43:59,419 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6905419491/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 17:44:38] 2025-12-02 01:43:59,419 | INFO     | extracted standard info from prmon json
[2025-12-01 17:44:38] 2025-12-02 01:43:59,419 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 17:44:38] 2025-12-02 01:43:59,419 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 17:44:38] 2025-12-02 01:43:59,420 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-01 17:44:38] 2025-12-02 01:43:59,420 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-01 17:44:38] 2025-12-02 01:43:59,420 | WARNING  | wrong length of table data, x=[1764639608.0, 1764639669.0], y=[1226.0, 804621.0] (must be same and length>=4)
[2025-12-01 17:44:38] 2025-12-02 01:43:59,421 | INFO     | could have reported an average CPU frequency of 2698 MHz (4 samples)
[2025-12-01 17:44:38] 2025-12-02 01:43:59,421 | INFO     | ..............................
[2025-12-01 17:44:38] 2025-12-02 01:43:59,421 | INFO     | . Timing measurements:
[2025-12-01 17:44:38] 2025-12-02 01:43:59,421 | INFO     | . get job = 0 s
[2025-12-01 17:44:38] 2025-12-02 01:43:59,421 | INFO     | . initial setup = 3 s
[2025-12-01 17:44:38] 2025-12-02 01:43:59,421 | INFO     | . payload setup = 12 s
[2025-12-01 17:44:38] 2025-12-02 01:43:59,421 | INFO     | . stage-in = 0 s
[2025-12-01 17:44:38] 2025-12-02 01:43:59,422 | INFO     | . payload execution = 110 s
[2025-12-01 17:44:38] 2025-12-02 01:43:59,422 | INFO     | . stage-out = 0 s
[2025-12-01 17:44:38] 2025-12-02 01:43:59,422 | INFO     | . log creation = 0 s
[2025-12-01 17:44:38] 2025-12-02 01:43:59,422 | INFO     | ..............................
[2025-12-01 17:44:38] 2025-12-02 01:43:59,422 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-01 17:44:38] 2025-12-02 01:43:59,422 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6905419491/pilotlog.txt
[2025-12-01 17:44:38] 2025-12-02 01:43:59,436 | WARNING  | 
[2025-12-01 17:44:38] [begin log extracts]
[2025-12-01 17:44:38] - Log from pilotlog.txt -
[2025-12-01 17:44:38] 2025-12-02 01:43:59,419 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6905419491/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 17:44:38] 2025-12-02 01:43:59,419 | INFO     | extracted standard info from prmon json
[2025-12-01 17:44:38] 2025-12-02 01:43:59,419 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 17:44:38] 2025-12-02 01:43:59,419 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 17:44:38] 2025-12-02 01:43:59,420 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-01 17:44:38] 2025-12-02 01:43:59,420 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-01 17:44:38] 2025-12-02 01:43:59,420 | WARNING  | wrong length of table data, x=[1764639608.0, 1764639669.0], y=[1226.0, 804621.0] (must be same and length>=4)
[2025-12-01 17:44:38] 2025-12-02 01:43:59,421 | INFO     | could have reported an average CPU frequency of 2698 MHz (4 samples)
[2025-12-01 17:44:38] 2025-12-02 01:43:59,421 | INFO     | ..............................
[2025-12-01 17:44:38] 2025-12-02 01:43:59,421 | INFO     | . Timing measurements:
[2025-12-01 17:44:38] 2025-12-02 01:43:59,421 | INFO     | . get job = 0 s
[2025-12-01 17:44:38] 2025-12-02 01:43:59,421 | INFO     | . initial setup = 3 s
[2025-12-01 17:44:38] 2025-12-02 01:43:59,421 | INFO     | . payload setup = 12 s
[2025-12-01 17:44:38] 2025-12-02 01:43:59,421 | INFO     | . stage-in = 0 s
[2025-12-01 17:44:38] 2025-12-02 01:43:59,422 | INFO     | . payload execution = 110 s
[2025-12-01 17:44:38] 2025-12-02 01:43:59,422 | INFO     | . stage-out = 0 s
[2025-12-01 17:44:38] 2025-12-02 01:43:59,422 | INFO     | . log creation = 0 s
[2025-12-01 17:44:38] 2025-12-02 01:43:59,422 | INFO     | ..............................
[2025-12-01 17:44:38] 2025-12-02 01:43:59,422 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-01 17:44:38] 2025-12-02 01:43:59,422 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6905419491/pilotlog.txt
[2025-12-01 17:44:38] [end log extracts]
[2025-12-01 17:44:38] 2025-12-02 01:43:59,436 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-12-01 17:44:38] 2025-12-02 01:43:59,436 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-12-01 17:44:38] 2025-12-02 01:43:59,495 | INFO     | 
[2025-12-01 17:44:38] 2025-12-02 01:43:59,496 | INFO     | job summary report
[2025-12-01 17:44:38] 2025-12-02 01:43:59,496 | INFO     | --------------------------------------------------
[2025-12-01 17:44:38] 2025-12-02 01:43:59,496 | INFO     | PanDA job id: 6905419491
[2025-12-01 17:44:38] 2025-12-02 01:43:59,496 | INFO     | task id: 47530725
[2025-12-01 17:44:38] 2025-12-02 01:43:59,496 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-12-01 17:41:47,496 CRITICAL Transform executor raised TransformValidationExceptio
[2025-12-01 17:44:38] 2025-12-02 01:43:59,496 | INFO     | error 2/2: 1165: Local output file is missing
[2025-12-01 17:44:38] 2025-12-02 01:43:59,496 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 17:44:38] 2025-12-02 01:43:59,496 | INFO     | pilot state: failed 
[2025-12-01 17:44:38] 2025-12-02 01:43:59,496 | INFO     | transexitcode: 65
[2025-12-01 17:44:38] 2025-12-02 01:43:59,496 | INFO     | exeerrorcode: 65
[2025-12-01 17:44:38] 2025-12-02 01:43:59,496 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-12-01 17:44:38] 2025-12-02 01:43:59,496 | INFO     | exitcode: 65
[2025-12-01 17:44:38] 2025-12-02 01:43:59,496 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-12-01 17:44:38] 2025-12-02 01:43:59,496 | INFO     | cpuconsumptiontime: 61 s
[2025-12-01 17:44:38] 2025-12-02 01:43:59,496 | INFO     | nevents: 0
[2025-12-01 17:44:38] 2025-12-02 01:43:59,496 | INFO     | neventsw: 0
[2025-12-01 17:44:38] 2025-12-02 01:43:59,496 | INFO     | pid: 2208306
[2025-12-01 17:44:38] 2025-12-02 01:43:59,496 | INFO     | pgrp: 2208306
[2025-12-01 17:44:38] 2025-12-02 01:43:59,496 | INFO     | corecount: 12
[2025-12-01 17:44:38] 2025-12-02 01:43:59,496 | INFO     | event service: False
[2025-12-01 17:44:38] 2025-12-02 01:43:59,497 | INFO     | sizes: {0: 2284228, 1: 2284427, 6: 2284689, 11: 2284717, 126: 2312505, 129: 2312505, 250: 2312827}
[2025-12-01 17:44:38] 2025-12-02 01:43:59,497 | INFO     | --------------------------------------------------
[2025-12-01 17:44:38] 2025-12-02 01:43:59,497 | INFO     | 
[2025-12-01 17:44:38] 2025-12-02 01:43:59,497 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-12-01 17:44:38] 2025-12-02 01:43:59,514 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 17:44:38] 2025-12-02 01:43:59,514 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 17:44:38] 2025-12-02 01:43:59,514 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 17:44:38] 2025-12-02 01:43:59,514 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 17:44:38] 2025-12-02 01:43:59,514 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 17:44:38] 2025-12-02 01:43:59,514 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 17:44:38] 2025-12-02 01:43:59,514 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 17:44:38] 2025-12-02 01:43:59,514 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 17:44:38] 2025-12-02 01:43:59,514 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 17:44:38] 2025-12-02 01:43:59,514 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 17:44:38] 2025-12-02 01:43:59,514 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 17:44:38] 2025-12-02 01:43:59,514 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 17:44:38] 2025-12-02 01:43:59,515 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 17:44:38] 2025-12-02 01:43:59,515 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 17:44:38] 2025-12-02 01:43:59,515 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 17:44:38] 2025-12-02 01:43:59,515 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 17:44:38] 2025-12-02 01:43:59,515 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 17:44:38] 2025-12-02 01:43:59,515 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 17:44:38] 2025-12-02 01:43:59,515 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 17:44:38] 2025-12-02 01:43:59,515 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 17:44:38] 2025-12-02 01:43:59,515 | INFO     | job 6905419491 has completed (purged errors)
[2025-12-01 17:44:38] 2025-12-02 01:43:59,515 | INFO     | overall cleanup function is called
[2025-12-01 17:44:38] 2025-12-02 01:44:00,523 | INFO     | --- collectZombieJob: --- 10, [2208306]
[2025-12-01 17:44:38] 2025-12-02 01:44:00,523 | INFO     | zombie collector waiting for pid 2208306
[2025-12-01 17:44:38] 2025-12-02 01:44:00,523 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 17:44:38] 2025-12-02 01:44:00,523 | INFO     | collected zombie processes
[2025-12-01 17:44:38] 2025-12-02 01:44:00,523 | INFO     | will attempt to kill all subprocesses of pid=2208306
[2025-12-01 17:44:38] 2025-12-02 01:44:00,722 | INFO     | process IDs to be killed: [2208306] (in reverse order)
[2025-12-01 17:44:38] 2025-12-02 01:44:00,802 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 17:44:38] 2025-12-02 01:44:00,803 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 17:44:38] 2025-12-02 01:44:00,809 | INFO     | did not find any defunct processes belonging to 2208306
[2025-12-01 17:44:38] 2025-12-02 01:44:00,817 | INFO     | did not find any defunct processes belonging to 2208306
[2025-12-01 17:44:38] 2025-12-02 01:44:00,818 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 17:44:38] 2025-12-02 01:44:00,818 | INFO     | ready for new job
[2025-12-01 17:44:38] 2025-12-02 01:44:00,819 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 17:44:38] 2025-12-02 01:44:00,820 | INFO     | ***************************************
[2025-12-01 17:44:38] 2025-12-02 01:44:00,820 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 17:44:38] 2025-12-02 01:44:00,820 | INFO     | ***************************************
[2025-12-01 17:44:38] 2025-12-02 01:44:00,820 | INFO     | 
[2025-12-01 17:44:38] 2025-12-02 01:44:00,822 | INFO     | architecture information:
[2025-12-01 17:44:38] 2025-12-02 01:44:00,823 | INFO     | executing command: cat /etc/os-release
[2025-12-01 17:44:38] 2025-12-02 01:44:00,836 | INFO     | cat /etc/os-release:
[2025-12-01 17:44:38] NAME="CentOS Linux"
[2025-12-01 17:44:38] VERSION="7 (Core)"
[2025-12-01 17:44:38] ID="centos"
[2025-12-01 17:44:38] ID_LIKE="rhel fedora"
[2025-12-01 17:44:38] VERSION_ID="7"
[2025-12-01 17:44:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 17:44:38] ANSI_COLOR="0;31"
[2025-12-01 17:44:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 17:44:38] HOME_URL="https://www.centos.org/"
[2025-12-01 17:44:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 17:44:38] 
[2025-12-01 17:44:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 17:44:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 17:44:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 17:44:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 17:44:38] 
[2025-12-01 17:44:38] 2025-12-02 01:44:00,836 | INFO     | ***************************************
[2025-12-01 17:44:38] 2025-12-02 01:44:01,339 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-12-01 17:44:38] 2025-12-02 01:44:01,352 | INFO     | sufficient remaining disk space (1805460176896 B)
[2025-12-01 17:44:38] 2025-12-02 01:44:01,352 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 17:44:38] 2025-12-02 01:44:01,352 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 17:44:38] 2025-12-02 01:44:01,352 | INFO     | update_server=False
[2025-12-01 17:44:38] 2025-12-02 01:44:01,353 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 17:44:38] 2025-12-02 01:44:01,353 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 17:44:38] 2025-12-02 01:44:01,353 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 17:44:38] 2025-12-02 01:44:01,353 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 17:44:38] 2025-12-02 01:44:02,011 | INFO     | all data control threads have been joined
[2025-12-01 17:44:38] 2025-12-02 01:44:02,070 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 17:44:38] 2025-12-02 01:44:02,070 | INFO     | aborting loop
[2025-12-01 17:44:38] 2025-12-02 01:44:02,359 | INFO     | [job] retrieve thread has finished
[2025-12-01 17:44:38] 2025-12-02 01:44:02,359 | INFO     | [job] queue monitor thread has finished
[2025-12-01 17:44:38] 2025-12-02 01:44:02,475 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 17:44:38] 2025-12-02 01:44:02,516 | INFO     | all payload control threads have been joined
[2025-12-01 17:44:38] 2025-12-02 01:44:02,654 | INFO     | all job control threads have been joined
[2025-12-01 17:44:38] 2025-12-02 01:44:02,847 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 17:44:38] 2025-12-02 01:44:03,016 | INFO     | [data] control thread has finished
[2025-12-01 17:44:38] 2025-12-02 01:44:03,049 | INFO     | [payload] failed_post thread has finished
[2025-12-01 17:44:38] 2025-12-02 01:44:03,075 | INFO     | [job] job monitor thread has finished
[2025-12-01 17:44:38] 2025-12-02 01:44:03,093 | INFO     | [payload] validate_post thread has finished
[2025-12-01 17:44:38] 2025-12-02 01:44:03,331 | INFO     | [job] validate thread has finished
[2025-12-01 17:44:38] 2025-12-02 01:44:03,342 | INFO     | [data] copytool_in thread has finished
[2025-12-01 17:44:38] 2025-12-02 01:44:03,361 | INFO     | [data] copytool_out thread has finished
[2025-12-01 17:44:38] 2025-12-02 01:44:03,502 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 17:44:38] 2025-12-02 01:44:03,521 | INFO     | [payload] control thread has finished
[2025-12-01 17:44:38] 2025-12-02 01:44:03,624 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 17:44:38] 2025-12-02 01:44:03,659 | INFO     | [job] control thread has finished
[2025-12-01 17:44:38] 2025-12-02 01:44:05,361 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 17:44:38] 2025-12-02 01:44:31,219 | INFO     | [monitor] cgroup control has ended
[2025-12-01 17:44:38] 2025-12-02 01:44:31,387 | INFO     | PID=2201048 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-01 17:44:38] 2025-12-02 01:44:31,387 | INFO     | .. there are 21 such processes running
[2025-12-01 17:44:38] 2025-12-02 01:44:31,388 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 17:44:38] 2025-12-02 01:44:31,388 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 17:44:38] 2025-12-02 01:44:31,388 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 17:44:38] 2025-12-02 01:44:32,916 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140609885214528)>', '<ExcThread(monitor, started 140609352353536)>']
[2025-12-01 17:44:38] 2025-12-02 01:44:33,399 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 17:44:38] 2025-12-02 01:44:33,399 | INFO     | [monitor] control thread has ended
[2025-12-01 17:44:38] 2025-12-02 01:44:37,942 | INFO     | all workflow threads have been joined
[2025-12-01 17:44:38] 2025-12-02 01:44:37,942 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 17:44:38] 2025-12-02 01:44:37,942 | INFO     | traces error code: 0
[2025-12-01 17:44:38] 2025-12-02 01:44:37,942 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 17:44:38] 2025-12-02 01:44:38,113 [wrapper] ==== pilot stdout END ====
[2025-12-01 17:44:38] 2025-12-02 01:44:38,126 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 17:44:38] 2025-12-02 01:44:38,137 [wrapper] pilotpid: 2201048
[2025-12-01 17:44:38] 2025-12-02 01:44:38,139 [wrapper] Pilot exit status: 0
[2025-12-01 17:44:38] 2025-12-02 01:44:38,152 [wrapper] pandaids: 6905419491
[2025-12-01 17:44:38] 2025-12-02 01:44:38,192 [wrapper] cleanup supervisor_pilot 2201054 2201049
[2025-12-01 17:44:38] 2025-12-02 01:44:38,195 [wrapper] Test setup, not cleaning
[2025-12-01 17:44:38] 2025-12-02 01:44:38,197 [wrapper] apfmon messages muted
[2025-12-01 17:44:38] 2025-12-02 01:44:38,202 [wrapper] ==== wrapper stdout END ====
[2025-12-01 17:44:38] 2025-12-02 01:44:38,203 [wrapper] ==== wrapper stderr END ====
[2025-12-01 17:44:38]  *** Error codes and diagnostics ***
[2025-12-01 17:44:38]     "exeErrorCode": 65,
[2025-12-01 17:44:38]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-12-01 17:44:38]     "pilotErrorCode": 1305,
[2025-12-01 17:44:38]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-12-01 17:44:38]  *** Listing of results directory ***
[2025-12-01 17:44:38] total 371796
[2025-12-01 17:44:38] -rwx------. 1 boinc boinc     36292 Nov 29 16:21 runpilot2-wrapper.sh
[2025-12-01 17:44:38] -rw-r--r--. 1 boinc boinc    576529 Nov 29 16:24 pilot3.tar.gz
[2025-12-01 17:44:38] -rw-r--r--. 1 boinc boinc      5112 Nov 29 16:27 queuedata.json
[2025-12-01 17:44:38] -rw-r--r--. 1 boinc boinc       100 Dec  1 17:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 17:44:38] -rwxr-xr-x. 1 boinc boinc      7986 Dec  1 17:39 run_atlas
[2025-12-01 17:44:38] -rw-r--r--. 1 boinc boinc       105 Dec  1 17:39 job.xml
[2025-12-01 17:44:38] -rw-r--r--. 2 boinc boinc 376502110 Dec  1 17:39 EVNT.47530720._000119.pool.root.1
[2025-12-01 17:44:38] -rw-r--r--. 2 boinc boinc    590125 Dec  1 17:39 input.tar.gz
[2025-12-01 17:44:38] -rw-r--r--. 1 boinc boinc      6597 Dec  1 17:39 init_data.xml
[2025-12-01 17:44:38] -rw-r--r--. 2 boinc boinc     15847 Dec  1 17:39 start_atlas.sh
[2025-12-01 17:44:38] drwxrwx--x. 2 boinc boinc      4096 Dec  1 17:39 shared
[2025-12-01 17:44:38] -rw-r--r--. 1 boinc boinc         0 Dec  1 17:39 boinc_lockfile
[2025-12-01 17:44:38] -rw-r--r--. 1 boinc boinc      2879 Dec  1 17:39 pandaJob.out
[2025-12-01 17:44:38] -rw-------. 1 boinc boinc    992016 Dec  1 17:39 agis_schedconf.cvmfs.json
[2025-12-01 17:44:38] -rw-------. 1 boinc boinc   1516240 Dec  1 17:39 agis_ddmendpoints.agis.ALL.json
[2025-12-01 17:44:38] drwx------. 5 boinc boinc      4096 Dec  1 17:39 pilot3
[2025-12-01 17:44:38] -rw-r--r--. 1 boinc boinc       524 Dec  1 17:41 boinc_task_state.xml
[2025-12-01 17:44:38] -rw-------. 1 boinc boinc      1003 Dec  1 17:41 memory_monitor_summary.json
[2025-12-01 17:44:38] -rw-------. 1 boinc boinc     51011 Dec  1 17:41 log.47530725._002541.job.log.tgz.1
[2025-12-01 17:44:38] -rw-------. 1 boinc boinc      9899 Dec  1 17:43 heartbeat.json
[2025-12-01 17:44:38] -rw-------. 1 boinc boinc        95 Dec  1 17:44 pilot_heartbeat.json
[2025-12-01 17:44:38] -rw-r--r--. 1 boinc boinc      8192 Dec  1 17:44 boinc_mmap_file
[2025-12-01 17:44:38] -rw-r--r--. 1 boinc boinc        23 Dec  1 17:44 wrapper_checkpoint.txt
[2025-12-01 17:44:38] -rw-------. 1 boinc boinc      4823 Dec  1 17:44 pilotlog.txt
[2025-12-01 17:44:38] -rw-------. 1 boinc boinc    100628 Dec  1 17:44 log.47530725._002541.job.log.1
[2025-12-01 17:44:38] -rw-------. 1 boinc boinc       186 Dec  1 17:44 output.list
[2025-12-01 17:44:38] -rw-r--r--. 1 boinc boinc       620 Dec  1 17:44 runtime_log
[2025-12-01 17:44:38] -rw-------. 1 boinc boinc    174080 Dec  1 17:44 result.tar.gz
[2025-12-01 17:44:38] -rw-------. 1 boinc boinc       647 Dec  1 17:44 sk9LDmuMkj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYHMKDm0lso4m.diag
[2025-12-01 17:44:38] -rw-r--r--. 1 boinc boinc      8636 Dec  1 17:44 runtime_log.err
[2025-12-01 17:44:38] -rw-r--r--. 1 boinc boinc     22469 Dec  1 17:44 stderr.txt
[2025-12-01 17:44:38] No HITS result produced
[2025-12-01 17:44:38]  *** Contents of shared directory: ***
[2025-12-01 17:44:38] total 368448
[2025-12-01 17:44:38] -rw-r--r--. 2 boinc boinc 376502110 Dec  1 17:39 ATLAS.root_0
[2025-12-01 17:44:38] -rw-r--r--. 2 boinc boinc    590125 Dec  1 17:39 input.tar.gz
[2025-12-01 17:44:38] -rw-r--r--. 2 boinc boinc     15847 Dec  1 17:39 start_atlas.sh
[2025-12-01 17:44:38] -rw-------. 1 boinc boinc    174080 Dec  1 17:44 result.tar.gz
17:44:39 (2197407): run_atlas exited; CPU time 59.405932
17:44:39 (2197407): called boinc_finish(0)

</stderr_txt>
]]>

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