Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:45:45 (2241991): wrapper (7.7.26015): starting
16:45:45 (2241991): wrapper: running run_atlas (--nthreads 4)
[2025-12-04 16:45:45] Arguments: --nthreads 4
[2025-12-04 16:45:45] Threads: 4
[2025-12-04 16:45:45] Checking for CVMFS
[2025-12-04 16:45:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-04 16:45:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-04 16:45:45] Running cvmfs_config stat atlas.cern.ch
[2025-12-04 16:45:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-04 16:45:45] 2.9.2.0 3127036 23055 101236 153639 1 68 36691355 36864000 0 130560 0 9227507 99.962 998683 1285 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-04 16:45:45] CVMFS is ok
[2025-12-04 16:45:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-04 16:45:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-04 16:45:45] Further information can be found at the LHC@home message board.
[2025-12-04 16:45:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-04 16:45:45] Checking for apptainer binary...
[2025-12-04 16:45:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-04 16:45:45] Running /usr/bin/apptainer --version
[2025-12-04 16:45:45] apptainer version 1.4.1-1.1
[2025-12-04 16:45:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-04 16:45:45] thA334
[2025-12-04 16:45:45] apptainer works
[2025-12-04 16:45:45] Set ATHENA_PROC_NUMBER=4
[2025-12-04 16:45:45] Set ATHENA_CORE_NUMBER=4
[2025-12-04 16:45:45] Starting ATLAS job with PandaID=6905025835
[2025-12-04 16:45:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-04 22:35:26]  *** The last 200 lines of the pilot log: ***
[2025-12-04 22:35:26] 2025-12-04 21:34:21,363 | INFO     | cat /etc/os-release:
[2025-12-04 22:35:26] NAME="CentOS Linux"
[2025-12-04 22:35:26] VERSION="7 (Core)"
[2025-12-04 22:35:26] ID="centos"
[2025-12-04 22:35:26] ID_LIKE="rhel fedora"
[2025-12-04 22:35:26] VERSION_ID="7"
[2025-12-04 22:35:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-04 22:35:26] ANSI_COLOR="0;31"
[2025-12-04 22:35:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-04 22:35:26] HOME_URL="https://www.centos.org/"
[2025-12-04 22:35:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-04 22:35:26] 
[2025-12-04 22:35:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-04 22:35:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-04 22:35:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-04 22:35:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-04 22:35:26] 
[2025-12-04 22:35:26] 2025-12-04 21:34:21,363 | INFO     | ***************************************
[2025-12-04 22:35:26] 2025-12-04 21:34:21,866 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-04 22:35:26] 2025-12-04 21:34:21,883 | INFO     | sufficient remaining disk space (222012899328 B)
[2025-12-04 22:35:26] 2025-12-04 21:34:21,884 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-04 22:35:26] 2025-12-04 21:34:21,884 | INFO     | current server update state: UPDATING_FINAL
[2025-12-04 22:35:26] 2025-12-04 21:34:21,884 | INFO     | update_server=False
[2025-12-04 22:35:26] 2025-12-04 21:34:21,884 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-04 22:35:26] 2025-12-04 21:34:22,016 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-04 22:35:26] 2025-12-04 21:34:22,100 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-04 22:35:26] 2025-12-04 21:34:22,100 | INFO     | aborting loop
[2025-12-04 22:35:26] 2025-12-04 21:34:22,281 | INFO     | all payload control threads have been joined
[2025-12-04 22:35:26] 2025-12-04 21:34:22,789 | INFO     | all data control threads have been joined
[2025-12-04 22:35:26] 2025-12-04 21:34:22,890 | INFO     | [job] retrieve thread has finished
[2025-12-04 22:35:26] 2025-12-04 21:34:23,105 | INFO     | [job] job monitor thread has finished
[2025-12-04 22:35:26] 2025-12-04 21:34:23,127 | INFO     | [payload] validate_pre thread has finished
[2025-12-04 22:35:26] 2025-12-04 21:34:23,287 | INFO     | [payload] control thread has finished
[2025-12-04 22:35:26] 2025-12-04 21:34:23,365 | INFO     | [payload] failed_post thread has finished
[2025-12-04 22:35:26] 2025-12-04 21:34:23,428 | INFO     | all job control threads have been joined
[2025-12-04 22:35:26] 2025-12-04 21:34:23,462 | INFO     | [data] copytool_in thread has finished
[2025-12-04 22:35:26] 2025-12-04 21:34:23,795 | INFO     | [data] control thread has finished
[2025-12-04 22:35:26] 2025-12-04 21:34:23,884 | INFO     | [payload] validate_post thread has finished
[2025-12-04 22:35:26] 2025-12-04 21:34:24,022 | INFO     | [data] copytool_out thread has finished
[2025-12-04 22:35:26] 2025-12-04 21:34:24,331 | INFO     | [job] validate thread has finished
[2025-12-04 22:35:26] 2025-12-04 21:34:24,361 | INFO     | [payload] execute_payloads thread has finished
[2025-12-04 22:35:26] 2025-12-04 21:34:24,365 | INFO     | [job] create_data_payload thread has finished
[2025-12-04 22:35:26] 2025-12-04 21:34:24,434 | INFO     | [job] control thread has finished
[2025-12-04 22:35:26] 2025-12-04 21:34:24,792 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-04 22:35:26] 2025-12-04 21:34:24,841 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-04 22:35:26] 2025-12-04 21:34:25,847 | INFO     | [job] queue monitor thread has finished
[2025-12-04 22:35:26] 2025-12-04 21:34:28,799 | INFO     | [data] queue_monitor thread has finished
[2025-12-04 22:35:26] 2025-12-04 21:34:32,181 | INFO     | job.realtimelogging is not enabled
[2025-12-04 22:35:26] 2025-12-04 21:34:33,187 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-04 22:35:26] 2025-12-04 21:34:51,725 | INFO     | PID=2245777 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-04 22:35:26] 2025-12-04 21:34:51,725 | INFO     | found 0 job(s) in 20 queues
[2025-12-04 22:35:26] 2025-12-04 21:34:51,726 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-04 22:35:26] 2025-12-04 21:34:51,726 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-04 22:35:26] 2025-12-04 21:35:20,288 | INFO     | [monitor] cgroup control has ended
[2025-12-04 22:35:26] 2025-12-04 21:35:21,294 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140597874915136)>', '<ExcThread(monitor, started 140597071431424)>']
[2025-12-04 22:35:26] 2025-12-04 21:35:21,887 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-04 22:35:26] 2025-12-04 21:35:21,888 | INFO     | [monitor] control thread has ended
[2025-12-04 22:35:26] 2025-12-04 21:35:26,320 | INFO     | all workflow threads have been joined
[2025-12-04 22:35:26] 2025-12-04 21:35:26,320 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-04 22:35:26] 2025-12-04 21:35:26,321 | INFO     | traces error code: 0
[2025-12-04 22:35:26] 2025-12-04 21:35:26,321 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-04 22:35:26] 2025-12-04 21:35:26,388 [wrapper] ==== pilot stdout END ====
[2025-12-04 22:35:26] 2025-12-04 21:35:26,392 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-04 22:35:26] 2025-12-04 21:35:26,395 [wrapper] pilotpid: 2245777
[2025-12-04 22:35:26] 2025-12-04 21:35:26,399 [wrapper] Pilot exit status: 0
[2025-12-04 22:35:26] 2025-12-04 21:35:26,410 [wrapper] pandaids: 6905025835
[2025-12-04 22:35:26] 2025-12-04 21:35:26,432 [wrapper] cleanup supervisor_pilot 2292584 2245778
[2025-12-04 22:35:26] 2025-12-04 21:35:26,435 [wrapper] Test setup, not cleaning
[2025-12-04 22:35:26] 2025-12-04 21:35:26,439 [wrapper] apfmon messages muted
[2025-12-04 22:35:26] 2025-12-04 21:35:26,443 [wrapper] ==== wrapper stdout END ====
[2025-12-04 22:35:26] 2025-12-04 21:35:26,446 [wrapper] ==== wrapper stderr END ====
[2025-12-04 22:35:26]  *** Error codes and diagnostics ***
[2025-12-04 22:35:26]     "exeErrorCode": 0,
[2025-12-04 22:35:26]     "exeErrorDiag": "",
[2025-12-04 22:35:26]     "pilotErrorCode": 0,
[2025-12-04 22:35:26]     "pilotErrorDiag": "",
[2025-12-04 22:35:26]  *** Listing of results directory ***
[2025-12-04 22:35:26] total 1064412
[2025-12-04 22:35:26] -rwx------ 1 boinc boinc     36292 Nov 30 01:20 runpilot2-wrapper.sh
[2025-12-04 22:35:26] -rw-r--r-- 1 boinc boinc    576529 Nov 30 01:24 pilot3.tar.gz
[2025-12-04 22:35:26] -rw-r--r-- 1 boinc boinc      5112 Nov 30 01:24 queuedata.json
[2025-12-04 22:35:26] -rw-r--r-- 1 boinc boinc       100 Dec  4 16:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-04 22:35:26] -rwxr-xr-x 1 boinc boinc      7986 Dec  4 16:45 run_atlas
[2025-12-04 22:35:26] -rw-r--r-- 1 boinc boinc       105 Dec  4 16:45 job.xml
[2025-12-04 22:35:26] -rw-r--r-- 2 boinc boinc 378618975 Dec  4 16:45 EVNT.47528871._000036.pool.root.1
[2025-12-04 22:35:26] -rw-r--r-- 2 boinc boinc    590137 Dec  4 16:45 input.tar.gz
[2025-12-04 22:35:26] -rw-r--r-- 2 boinc boinc     15847 Dec  4 16:45 start_atlas.sh
[2025-12-04 22:35:26] drwxrwx--x 2 boinc boinc      4096 Dec  4 16:45 shared
[2025-12-04 22:35:26] -rw-r--r-- 1 boinc boinc         0 Dec  4 16:45 boinc_setup_complete
[2025-12-04 22:35:26] -rw-r--r-- 1 boinc boinc      6369 Dec  4 16:45 init_data.xml
[2025-12-04 22:35:26] -rw-r--r-- 1 boinc boinc         0 Dec  4 16:45 boinc_lockfile
[2025-12-04 22:35:26] -rw-r--r-- 1 boinc boinc      2879 Dec  4 16:45 pandaJob.out
[2025-12-04 22:35:26] -rw------- 1 boinc boinc    985572 Dec  4 16:45 agis_schedconf.cvmfs.json
[2025-12-04 22:35:26] drwx------ 5 boinc boinc      4096 Dec  4 16:45 pilot3
[2025-12-04 22:35:26] -rw-r--r-- 1 boinc boinc       531 Dec  4 22:30 boinc_task_state.xml
[2025-12-04 22:35:26] -rw------- 1 boinc boinc 698894583 Dec  4 22:33 HITS.47538113._002080.pool.root.1
[2025-12-04 22:35:26] -rw------- 1 boinc boinc      1028 Dec  4 22:34 memory_monitor_summary.json
[2025-12-04 22:35:26] -rw------- 1 boinc boinc   1516240 Dec  4 22:34 agis_ddmendpoints.agis.ALL.json
[2025-12-04 22:35:26] -rw------- 1 boinc boinc   1294448 Dec  4 22:34 log.47538113._002080.job.log.tgz.1
[2025-12-04 22:35:26] -rw------- 1 boinc boinc     27193 Dec  4 22:34 heartbeat.json
[2025-12-04 22:35:26] -rw------- 1 boinc boinc        95 Dec  4 22:34 pilot_heartbeat.json
[2025-12-04 22:35:26] -rw-r--r-- 1 boinc boinc      8192 Dec  4 22:35 boinc_mmap_file
[2025-12-04 22:35:26] -rw-r--r-- 1 boinc boinc        28 Dec  4 22:35 wrapper_checkpoint.txt
[2025-12-04 22:35:26] -rw------- 1 boinc boinc      4824 Dec  4 22:35 pilotlog.txt
[2025-12-04 22:35:26] -rw------- 1 boinc boinc   2958926 Dec  4 22:35 log.47538113._002080.job.log.1
[2025-12-04 22:35:26] -rw------- 1 boinc boinc       353 Dec  4 22:35 output.list
[2025-12-04 22:35:26] -rw-r--r-- 1 boinc boinc       620 Dec  4 22:35 runtime_log
[2025-12-04 22:35:26] -rw------- 1 boinc boinc   4290560 Dec  4 22:35 result.tar.gz
[2025-12-04 22:35:26] -rw-r--r-- 1 boinc boinc      8898 Dec  4 22:35 runtime_log.err
[2025-12-04 22:35:26] -rw------- 1 boinc boinc       665 Dec  4 22:35 oatMDmvLkj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm0CMKDm70Frmn.diag
[2025-12-04 22:35:26] -rw-r--r-- 1 boinc boinc      8883 Dec  4 22:35 stderr.txt
[2025-12-04 22:35:26] HITS file was successfully produced:
[2025-12-04 22:35:26] -rw------- 1 boinc boinc 698894583 Dec  4 22:33 shared/HITS.pool.root.1
[2025-12-04 22:35:26]  *** Contents of shared directory: ***
[2025-12-04 22:35:26] total 1057060
[2025-12-04 22:35:26] -rw-r--r-- 2 boinc boinc 378618975 Dec  4 16:45 ATLAS.root_0
[2025-12-04 22:35:26] -rw-r--r-- 2 boinc boinc    590137 Dec  4 16:45 input.tar.gz
[2025-12-04 22:35:26] -rw-r--r-- 2 boinc boinc     15847 Dec  4 16:45 start_atlas.sh
[2025-12-04 22:35:26] -rw------- 1 boinc boinc 698894583 Dec  4 22:33 HITS.pool.root.1
[2025-12-04 22:35:26] -rw------- 1 boinc boinc   4290560 Dec  4 22:35 result.tar.gz
22:35:27 (2241991): run_atlas exited; CPU time 81422.454338
22:35:27 (2241991): called boinc_finish(0)

</stderr_txt>
]]>

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