Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:09:20 (8644): wrapper (7.7.26015): starting
20:09:20 (8644): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 20:09:20] Arguments: --nthreads 8
[2025-12-02 20:09:20] Threads: 8
[2025-12-02 20:09:20] Checking for CVMFS
[2025-12-02 20:09:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 20:09:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 20:09:22] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 20:09:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 20:09:23] 2.11.2.0 30898 294237 138792 153566 0 70 22525603 25165824 2478 130560 12 132235030 99.873 81859708 2949 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-02 20:09:23] CVMFS is ok
[2025-12-02 20:09:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 20:09:23] Checking for apptainer binary...
[2025-12-02 20:09:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 20:09:23] Running /usr/bin/apptainer --version
[2025-12-02 20:09:24] apptainer version 1.3.2-1.el7
[2025-12-02 20:09:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 20:09:32] cg-vwn285.simple-grid.lan
[2025-12-02 20:09:32] apptainer works
[2025-12-02 20:09:32] Set ATHENA_PROC_NUMBER=8
[2025-12-02 20:09:32] Set ATHENA_CORE_NUMBER=8
[2025-12-02 20:09:32] Starting ATLAS job with PandaID=6905333363
[2025-12-02 20:09:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 16:32:29]  *** The last 200 lines of the pilot log: ***
[2025-12-03 16:32:29] 2025-12-03 15:31:13,799 | INFO     | time since job start (73081s) is within the limit (172800.0s)
[2025-12-03 16:32:29] 2025-12-03 15:31:15,806 | INFO     | time since job start (73083s) is within the limit (172800.0s)
[2025-12-03 16:32:29] 2025-12-03 15:31:15,846 | INFO     | monitor loop #4978: job 0:6905333363 is in state 'finished'
[2025-12-03 16:32:29] 2025-12-03 15:31:15,846 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 16:32:29] 2025-12-03 15:31:17,812 | INFO     | time since job start (73085s) is within the limit (172800.0s)
[2025-12-03 16:32:29] 2025-12-03 15:31:18,351 | INFO     | monitor loop #4979: job 0:6905333363 is in state 'finished'
[2025-12-03 16:32:29] 2025-12-03 15:31:18,351 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 16:32:29] 2025-12-03 15:31:19,014 | INFO     | PID=12419 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 16:32:29] 2025-12-03 15:31:19,014 | INFO     | .. there are 9 such processes running
[2025-12-03 16:32:29] 2025-12-03 15:31:20,014 | INFO     | time since job start (73088s) is within the limit (172800.0s)
[2025-12-03 16:32:29] 2025-12-03 15:31:20,856 | INFO     | monitor loop #4980: job 0:6905333363 is in state 'finished'
[2025-12-03 16:32:29] 2025-12-03 15:31:20,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 16:32:29] 2025-12-03 15:31:22,023 | INFO     | time since job start (73090s) is within the limit (172800.0s)
[2025-12-03 16:32:29] 2025-12-03 15:31:23,361 | INFO     | monitor loop #4981: job 0:6905333363 is in state 'finished'
[2025-12-03 16:32:29] 2025-12-03 15:31:23,361 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 16:32:29] 2025-12-03 15:31:23,373 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 16:32:29] 2025-12-03 15:31:23,374 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-03 16:32:29] 2025-12-03 15:31:23,376 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6905333363/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 16:32:29] 2025-12-03 15:31:23,376 | INFO     | extracted standard info from prmon json
[2025-12-03 16:32:29] 2025-12-03 15:31:23,376 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 16:32:29] 2025-12-03 15:31:23,377 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 16:32:29] 2025-12-03 15:31:23,415 | INFO     | fitting pss+swap vs Time
[2025-12-03 16:32:29] 2025-12-03 15:31:23,417 | INFO     | sum of square deviations: 518597862269.59314
[2025-12-03 16:32:29] 2025-12-03 15:31:23,508 | INFO     | sum of deviations: 2941919968533.562
[2025-12-03 16:32:29] 2025-12-03 15:31:23,509 | INFO     | mean x: 1764739583.0185342
[2025-12-03 16:32:29] 2025-12-03 15:31:23,509 | INFO     | mean y: 3336069.9292333615
[2025-12-03 16:32:29] 2025-12-03 15:31:23,509 | INFO     | intersect: -10007739941.496553
[2025-12-03 16:32:29] 2025-12-03 15:31:23,510 | INFO     | chi2: 22.97852389497745
[2025-12-03 16:32:29] 2025-12-03 15:31:23,512 | INFO     | sum of square deviations: 512072331906.8828
[2025-12-03 16:32:29] 2025-12-03 15:31:23,564 | INFO     | sum of deviations: 3434508846507.5728
[2025-12-03 16:32:29] 2025-12-03 15:31:23,564 | INFO     | mean x: 1764739430.5228426
[2025-12-03 16:32:29] 2025-12-03 15:31:23,564 | INFO     | mean y: 3347580.701353638
[2025-12-03 16:32:29] 2025-12-03 15:31:23,565 | INFO     | intersect: -11832896653.274555
[2025-12-03 16:32:29] 2025-12-03 15:31:23,566 | INFO     | chi2: 19.44501036108021
[2025-12-03 16:32:29] 2025-12-03 15:31:23,566 | INFO     | current chi2=19.44501036108021 (change=15.377460928504547 %)
[2025-12-03 16:32:29] 2025-12-03 15:31:23,566 | INFO     | right removable region: 1181
[2025-12-03 16:32:29] 2025-12-03 15:31:23,568 | INFO     | sum of square deviations: 512071594416.8826
[2025-12-03 16:32:29] 2025-12-03 15:31:23,615 | INFO     | sum of deviations: 2339815027873.282
[2025-12-03 16:32:29] 2025-12-03 15:31:23,616 | INFO     | mean x: 1764739735.5228426
[2025-12-03 16:32:29] 2025-12-03 15:31:23,616 | INFO     | mean y: 3350139.7487309645
[2025-12-03 16:32:29] 2025-12-03 15:31:23,616 | INFO     | intersect: -8060296816.031977
[2025-12-03 16:32:29] 2025-12-03 15:31:23,617 | INFO     | chi2: 17.861651857566354
[2025-12-03 16:32:29] 2025-12-03 15:31:23,617 | INFO     | current chi2=17.861651857566354 (change=22.26806239076793 %)
[2025-12-03 16:32:29] 2025-12-03 15:31:23,618 | INFO     | left removable region: 10
[2025-12-03 16:32:29] 2025-12-03 15:31:23,619 | INFO     | sum of square deviations: 497907884448.76666
[2025-12-03 16:32:29] 2025-12-03 15:31:23,656 | INFO     | sum of deviations: 2398865449157.585
[2025-12-03 16:32:29] 2025-12-03 15:31:23,656 | INFO     | mean x: 1764739705.032451
[2025-12-03 16:32:29] 2025-12-03 15:31:23,656 | INFO     | mean y: 3377449.853116994
[2025-12-03 16:32:29] 2025-12-03 15:31:23,656 | INFO     | intersect: -8498944440.160048
[2025-12-03 16:32:29] 2025-12-03 15:31:23,658 | INFO     | chi2: 9.247505685983004
[2025-12-03 16:32:29] 2025-12-03 15:31:23,658 | INFO     | current memory leak: 4.82 B/s (using 1171 data points, chi2=9.25)
[2025-12-03 16:32:29] 2025-12-03 15:31:23,659 | INFO     | could have reported an average CPU frequency of 1999 MHz (41 samples)
[2025-12-03 16:32:29] 2025-12-03 15:31:23,659 | INFO     | ..............................
[2025-12-03 16:32:29] 2025-12-03 15:31:23,660 | INFO     | . Timing measurements:
[2025-12-03 16:32:29] 2025-12-03 15:31:23,660 | INFO     | . get job = 0 s
[2025-12-03 16:32:29] 2025-12-03 15:31:23,660 | INFO     | . initial setup = 10 s
[2025-12-03 16:32:29] 2025-12-03 15:31:23,660 | INFO     | . payload setup = 269 s
[2025-12-03 16:32:29] 2025-12-03 15:31:23,660 | INFO     | . stage-in = 0 s
[2025-12-03 16:32:29] 2025-12-03 15:31:23,660 | INFO     | . payload execution = 72519 s
[2025-12-03 16:32:29] 2025-12-03 15:31:23,660 | INFO     | . stage-out = 5 s
[2025-12-03 16:32:29] 2025-12-03 15:31:23,660 | INFO     | . log creation = 1 s
[2025-12-03 16:32:29] 2025-12-03 15:31:23,660 | INFO     | ..............................
[2025-12-03 16:32:29] 2025-12-03 15:31:23,820 | INFO     | 
[2025-12-03 16:32:29] 2025-12-03 15:31:23,820 | INFO     | job summary report
[2025-12-03 16:32:29] 2025-12-03 15:31:23,821 | INFO     | --------------------------------------------------
[2025-12-03 16:32:29] 2025-12-03 15:31:23,821 | INFO     | PanDA job id: 6905333363
[2025-12-03 16:32:29] 2025-12-03 15:31:23,821 | INFO     | task id: 47530725
[2025-12-03 16:32:29] 2025-12-03 15:31:23,821 | INFO     | errors: (none)
[2025-12-03 16:32:29] 2025-12-03 15:31:23,821 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 16:32:29] 2025-12-03 15:31:23,821 | INFO     | pilot state: finished 
[2025-12-03 16:32:29] 2025-12-03 15:31:23,821 | INFO     | transexitcode: 0
[2025-12-03 16:32:29] 2025-12-03 15:31:23,821 | INFO     | exeerrorcode: 0
[2025-12-03 16:32:29] 2025-12-03 15:31:23,821 | INFO     | exeerrordiag: 
[2025-12-03 16:32:29] 2025-12-03 15:31:23,822 | INFO     | exitcode: 0
[2025-12-03 16:32:29] 2025-12-03 15:31:23,822 | INFO     | exitmsg: OK
[2025-12-03 16:32:29] 2025-12-03 15:31:23,822 | INFO     | cpuconsumptiontime: 269389 s
[2025-12-03 16:32:29] 2025-12-03 15:31:23,822 | INFO     | nevents: 1000
[2025-12-03 16:32:29] 2025-12-03 15:31:23,822 | INFO     | neventsw: 0
[2025-12-03 16:32:29] 2025-12-03 15:31:23,822 | INFO     | pid: 19690
[2025-12-03 16:32:29] 2025-12-03 15:31:23,822 | INFO     | pgrp: 19690
[2025-12-03 16:32:29] 2025-12-03 15:31:23,822 | INFO     | corecount: 8
[2025-12-03 16:32:29] 2025-12-03 15:31:23,822 | INFO     | event service: False
[2025-12-03 16:32:29] 2025-12-03 15:31:23,822 | INFO     | sizes: {0: 2284173, 1: 2284428, 12: 2284428, 23: 2284456, 34: 2284484, 45: 2284512, 55: 2284668, 66: 2284696, 77: 2284724, 87: 2284780, 95: 2285070, 98: 2285378, 7
[2025-12-03 16:32:29] 2025-12-03 15:31:23,823 | INFO     | --------------------------------------------------
[2025-12-03 16:32:29] 2025-12-03 15:31:23,823 | INFO     | 
[2025-12-03 16:32:29] 2025-12-03 15:31:23,823 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-12-03 16:32:29] 2025-12-03 15:31:24,030 | INFO     | time since job start (73092s) is within the limit (172800.0s)
[2025-12-03 16:32:29] 2025-12-03 15:31:24,311 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 16:32:29] 2025-12-03 15:31:24,311 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 16:32:29] 2025-12-03 15:31:24,311 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 16:32:29] 2025-12-03 15:31:24,311 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 16:32:29] 2025-12-03 15:31:24,311 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 16:32:29] 2025-12-03 15:31:24,312 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 16:32:29] 2025-12-03 15:31:24,312 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 16:32:29] 2025-12-03 15:31:24,312 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 16:32:29] 2025-12-03 15:31:24,312 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 16:32:29] 2025-12-03 15:31:24,312 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 16:32:29] 2025-12-03 15:31:24,312 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 16:32:29] 2025-12-03 15:31:24,312 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 16:32:29] 2025-12-03 15:31:24,312 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 16:32:29] 2025-12-03 15:31:24,312 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 16:32:29] 2025-12-03 15:31:24,312 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 16:32:29] 2025-12-03 15:31:24,312 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 16:32:29] 2025-12-03 15:31:24,312 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 16:32:29] 2025-12-03 15:31:24,313 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 16:32:29] 2025-12-03 15:31:24,313 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 16:32:29] 2025-12-03 15:31:24,313 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 16:32:29] 2025-12-03 15:31:24,313 | INFO     | job 6905333363 has completed (purged errors)
[2025-12-03 16:32:29] 2025-12-03 15:31:24,313 | INFO     | overall cleanup function is called
[2025-12-03 16:32:29] 2025-12-03 15:31:25,329 | INFO     | --- collectZombieJob: --- 10, [19690]
[2025-12-03 16:32:29] 2025-12-03 15:31:25,329 | INFO     | zombie collector waiting for pid 19690
[2025-12-03 16:32:29] 2025-12-03 15:31:25,330 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 16:32:29] 2025-12-03 15:31:25,330 | INFO     | collected zombie processes
[2025-12-03 16:32:29] 2025-12-03 15:31:25,330 | INFO     | will attempt to kill all subprocesses of pid=19690
[2025-12-03 16:32:29] 2025-12-03 15:31:25,437 | INFO     | process IDs to be killed: [19690] (in reverse order)
[2025-12-03 16:32:29] 2025-12-03 15:31:26,214 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 16:32:29] 2025-12-03 15:31:26,214 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 16:32:29] 2025-12-03 15:31:26,217 | INFO     | did not find any defunct processes belonging to 19690
[2025-12-03 16:32:29] 2025-12-03 15:31:26,219 | INFO     | did not find any defunct processes belonging to 19690
[2025-12-03 16:32:29] 2025-12-03 15:31:26,273 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 16:32:29] 2025-12-03 15:31:26,274 | INFO     | ready for new job
[2025-12-03 16:32:29] 2025-12-03 15:31:26,274 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 16:32:29] 2025-12-03 15:31:26,278 | INFO     | ***************************************
[2025-12-03 16:32:29] 2025-12-03 15:31:26,278 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 16:32:29] 2025-12-03 15:31:26,278 | INFO     | ***************************************
[2025-12-03 16:32:29] 2025-12-03 15:31:26,278 | INFO     | 
[2025-12-03 16:32:29] 2025-12-03 15:31:26,279 | INFO     | pilot is running in a VM
[2025-12-03 16:32:29] 2025-12-03 15:31:26,279 | INFO     | architecture information:
[2025-12-03 16:32:29] 2025-12-03 15:31:26,295 | INFO     | executing command: cat /etc/os-release
[2025-12-03 16:32:29] 2025-12-03 15:31:26,580 | INFO     | cat /etc/os-release:
[2025-12-03 16:32:29] NAME="CentOS Linux"
[2025-12-03 16:32:29] VERSION="7 (Core)"
[2025-12-03 16:32:29] ID="centos"
[2025-12-03 16:32:29] ID_LIKE="rhel fedora"
[2025-12-03 16:32:29] VERSION_ID="7"
[2025-12-03 16:32:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 16:32:29] ANSI_COLOR="0;31"
[2025-12-03 16:32:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 16:32:29] HOME_URL="https://www.centos.org/"
[2025-12-03 16:32:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 16:32:29] 
[2025-12-03 16:32:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 16:32:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 16:32:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 16:32:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 16:32:29] 
[2025-12-03 16:32:29] 2025-12-03 15:31:26,580 | INFO     | ***************************************
[2025-12-03 16:32:29] 2025-12-03 15:31:27,083 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-12-03 16:32:29] 2025-12-03 15:31:27,285 | INFO     | sufficient remaining disk space (491719229440 B)
[2025-12-03 16:32:29] 2025-12-03 15:31:27,285 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 16:32:29] 2025-12-03 15:31:27,285 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 16:32:29] 2025-12-03 15:31:27,286 | INFO     | update_server=False
[2025-12-03 16:32:29] 2025-12-03 15:31:27,286 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 16:32:29] 2025-12-03 15:31:27,286 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 16:32:29] 2025-12-03 15:31:27,286 | INFO     | aborting loop
[2025-12-03 16:32:29] 2025-12-03 15:31:27,612 | INFO     | all job control threads have been joined
[2025-12-03 16:32:29] 2025-12-03 15:31:28,222 | INFO     | all data control threads have been joined
[2025-12-03 16:32:29] 2025-12-03 15:31:28,280 | INFO     | all payload control threads have been joined
[2025-12-03 16:32:29] 2025-12-03 15:31:28,291 | INFO     | [job] retrieve thread has finished
[2025-12-03 16:32:29] 2025-12-03 15:31:28,292 | INFO     | [job] job monitor thread has finished
[2025-12-03 16:32:29] 2025-12-03 15:31:28,494 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 16:32:29] 2025-12-03 15:31:28,549 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 16:32:29] 2025-12-03 15:31:28,618 | INFO     | [job] control thread has finished
[2025-12-03 16:32:29] 2025-12-03 15:31:28,815 | INFO     | [payload] failed_post thread has finished
[2025-12-03 16:32:29] 2025-12-03 15:31:28,834 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 16:32:29] 2025-12-03 15:31:28,858 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 16:32:29] 2025-12-03 15:31:29,012 | INFO     | [job] validate thread has finished
[2025-12-03 16:32:29] 2025-12-03 15:31:29,228 | INFO     | [data] control thread has finished
[2025-12-03 16:32:29] 2025-12-03 15:31:29,286 | INFO     | [payload] control thread has finished
[2025-12-03 16:32:29] 2025-12-03 15:31:29,424 | INFO     | [payload] validate_post thread has finished
[2025-12-03 16:32:29] 2025-12-03 15:31:29,497 | INFO     | [data] copytool_in thread has finished
[2025-12-03 16:32:29] 2025-12-03 15:31:29,770 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 16:32:29] 2025-12-03 15:31:29,771 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 16:32:29] 2025-12-03 15:31:29,840 | INFO     | [job] queue monitor thread has finished
[2025-12-03 16:32:29] 2025-12-03 15:31:30,501 | INFO     | [data] copytool_out thread has finished
[2025-12-03 16:32:29] 2025-12-03 15:31:30,717 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 16:32:29] 2025-12-03 15:31:34,726 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 16:32:29] 2025-12-03 15:31:57,198 | INFO     | PID=12419 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-03 16:32:29] 2025-12-03 15:31:57,198 | INFO     | .. there are 9 such processes running
[2025-12-03 16:32:29] 2025-12-03 15:31:57,198 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 16:32:29] 2025-12-03 15:31:57,199 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 16:32:29] 2025-12-03 15:31:57,199 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 16:32:29] 2025-12-03 15:32:19,148 | INFO     | [monitor] cgroup control has ended
[2025-12-03 16:32:29] 2025-12-03 15:32:20,769 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139658324264768)>', '<ExcThread(monitor, started 139657731876608)>']
[2025-12-03 16:32:29] 2025-12-03 15:32:21,340 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 16:32:29] 2025-12-03 15:32:21,340 | INFO     | [monitor] control thread has ended
[2025-12-03 16:32:29] 2025-12-03 15:32:25,795 | INFO     | all workflow threads have been joined
[2025-12-03 16:32:29] 2025-12-03 15:32:25,795 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 16:32:29] 2025-12-03 15:32:25,796 | INFO     | traces error code: 0
[2025-12-03 16:32:29] 2025-12-03 15:32:25,796 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 16:32:29] 2025-12-03 15:32:25,959 [wrapper] ==== pilot stdout END ====
[2025-12-03 16:32:29] 2025-12-03 15:32:25,968 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 16:32:29] 2025-12-03 15:32:25,973 [wrapper] pilotpid: 12419
[2025-12-03 16:32:29] 2025-12-03 15:32:25,976 [wrapper] Pilot exit status: 0
[2025-12-03 16:32:29] 2025-12-03 15:32:26,215 [wrapper] pandaids: 6905333363
[2025-12-03 16:32:29] 2025-12-03 15:32:26,747 [wrapper] cleanup supervisor_pilot  2958 12420
[2025-12-03 16:32:29] 2025-12-03 15:32:26,838 [wrapper] Test setup, not cleaning
[2025-12-03 16:32:29] 2025-12-03 15:32:26,925 [wrapper] apfmon messages muted
[2025-12-03 16:32:29] 2025-12-03 15:32:26,984 [wrapper] ==== wrapper stdout END ====
[2025-12-03 16:32:29] 2025-12-03 15:32:27,085 [wrapper] ==== wrapper stderr END ====
[2025-12-03 16:32:29]  *** Error codes and diagnostics ***
[2025-12-03 16:32:29]     "exeErrorCode": 0,
[2025-12-03 16:32:29]     "exeErrorDiag": "",
[2025-12-03 16:32:29]     "pilotErrorCode": 0,
[2025-12-03 16:32:29]     "pilotErrorDiag": "",
[2025-12-03 16:32:29]  *** Listing of results directory ***
[2025-12-03 16:32:29] total 1076368
[2025-12-03 16:32:29] -rwx------. 1 boinc boinc     36292 Nov 30 01:21 runpilot2-wrapper.sh
[2025-12-03 16:32:29] -rw-r--r--. 1 boinc boinc    576529 Nov 30 01:24 pilot3.tar.gz
[2025-12-03 16:32:29] -rw-r--r--. 1 boinc boinc      5112 Nov 30 01:24 queuedata.json
[2025-12-03 16:32:29] -rw-r--r--. 1 boinc boinc       100 Dec  2 20:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 16:32:29] -rwxr-xr-x. 1 boinc boinc      7986 Dec  2 20:09 run_atlas
[2025-12-03 16:32:29] -rw-r--r--. 1 boinc boinc       105 Dec  2 20:09 job.xml
[2025-12-03 16:32:29] -rw-r--r--. 1 boinc boinc      6389 Dec  2 20:09 init_data.xml
[2025-12-03 16:32:29] -rw-r--r--. 2 boinc boinc 378522834 Dec  2 20:09 EVNT.47530720._000078.pool.root.1
[2025-12-03 16:32:29] -rw-r--r--. 2 boinc boinc     15847 Dec  2 20:09 start_atlas.sh
[2025-12-03 16:32:29] drwxrwx--x. 2 boinc boinc        68 Dec  2 20:09 shared
[2025-12-03 16:32:29] -rw-r--r--. 2 boinc boinc    590126 Dec  2 20:09 input.tar.gz
[2025-12-03 16:32:29] -rw-r--r--. 1 boinc boinc         0 Dec  2 20:09 boinc_lockfile
[2025-12-03 16:32:29] -rw-r--r--. 1 boinc boinc      2878 Dec  2 20:09 pandaJob.out
[2025-12-03 16:32:29] -rw-------. 1 boinc boinc    988850 Dec  2 20:13 agis_schedconf.cvmfs.json
[2025-12-03 16:32:29] drwx------. 5 boinc boinc      4096 Dec  2 20:13 pilot3
[2025-12-03 16:32:29] -rw-r--r--. 1 boinc boinc       533 Dec  3 16:08 boinc_task_state.xml
[2025-12-03 16:32:29] -rw-------. 1 boinc boinc 695369081 Dec  3 16:28 HITS.47530725._002158.pool.root.1
[2025-12-03 16:32:29] -rw-------. 1 boinc boinc      1033 Dec  3 16:29 memory_monitor_summary.json
[2025-12-03 16:32:29] -rw-------. 1 boinc boinc   1516240 Dec  3 16:29 agis_ddmendpoints.agis.ALL.json
[2025-12-03 16:32:29] -rw-------. 1 boinc boinc   2422502 Dec  3 16:29 log.47530725._002158.job.log.tgz.1
[2025-12-03 16:32:29] -rw-------. 1 boinc boinc        95 Dec  3 16:31 pilot_heartbeat.json
[2025-12-03 16:32:29] -rw-------. 1 boinc boinc     27435 Dec  3 16:31 heartbeat.json
[2025-12-03 16:32:29] -rw-r--r--. 1 boinc boinc        29 Dec  3 16:32 wrapper_checkpoint.txt
[2025-12-03 16:32:29] -rw-r--r--. 1 boinc boinc      8192 Dec  3 16:32 boinc_mmap_file
[2025-12-03 16:32:29] -rw-------. 1 boinc boinc      4885 Dec  3 16:32 pilotlog.txt
[2025-12-03 16:32:29] -rw-------. 1 boinc boinc   9766325 Dec  3 16:32 log.47530725._002158.job.log.1
[2025-12-03 16:32:29] -rw-------. 1 boinc boinc       353 Dec  3 16:32 output.list
[2025-12-03 16:32:29] -rw-r--r--. 1 boinc boinc       620 Dec  3 16:32 runtime_log
[2025-12-03 16:32:29] -rw-------. 1 boinc boinc  12226560 Dec  3 16:32 result.tar.gz
[2025-12-03 16:32:29] -rw-r--r--. 1 boinc boinc      8833 Dec  3 16:32 runtime_log.err
[2025-12-03 16:32:29] -rw-------. 1 boinc boinc       661 Dec  3 16:32 ktOMDmjMkj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmiXPKDmiYeJCn.diag
[2025-12-03 16:32:29] -rw-r--r--. 1 boinc boinc     21507 Dec  3 16:32 stderr.txt
[2025-12-03 16:32:29] HITS file was successfully produced:
[2025-12-03 16:32:29] -rw-------. 1 boinc boinc 695369081 Dec  3 16:28 shared/HITS.pool.root.1
[2025-12-03 16:32:29]  *** Contents of shared directory: ***
[2025-12-03 16:32:29] total 1061260
[2025-12-03 16:32:29] -rw-r--r--. 2 boinc boinc 378522834 Dec  2 20:09 ATLAS.root_0
[2025-12-03 16:32:29] -rw-r--r--. 2 boinc boinc     15847 Dec  2 20:09 start_atlas.sh
[2025-12-03 16:32:29] -rw-r--r--. 2 boinc boinc    590126 Dec  2 20:09 input.tar.gz
[2025-12-03 16:32:29] -rw-------. 1 boinc boinc 695369081 Dec  3 16:28 HITS.pool.root.1
[2025-12-03 16:32:29] -rw-------. 1 boinc boinc  12226560 Dec  3 16:32 result.tar.gz
16:32:31 (8644): run_atlas exited; CPU time 269772.805068
16:32:31 (8644): called boinc_finish(0)

</stderr_txt>
]]>

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