Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:08:26 (2991312): wrapper (7.7.26015): starting
16:08:26 (2991312): wrapper: running run_atlas (--nthreads 12)
[2025-12-01 16:08:26] Arguments: --nthreads 12
[2025-12-01 16:08:26] Threads: 12
[2025-12-01 16:08:26] Checking for CVMFS
[2025-12-01 16:08:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 16:08:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 16:08:26] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 16:08:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 16:08:26] 2.11.5.0 2137812 1092 117728 153537 1 55 35866075 45568001 12682 130560 0 1771489 99.520 2769059 22886 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-12-01 16:08:26] CVMFS is ok
[2025-12-01 16:08:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 16:08:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 16:08:26] Further information can be found at the LHC@home message board.
[2025-12-01 16:08:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 16:08:26] Checking for apptainer binary...
[2025-12-01 16:08:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 16:08:26] Running /usr/bin/apptainer --version
[2025-12-01 16:08:27] apptainer version 1.4.1-1.el9
[2025-12-01 16:08:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 16:08:29] wns0059.triumf.lcg
[2025-12-01 16:08:29] apptainer works
[2025-12-01 16:08:29] Set ATHENA_PROC_NUMBER=12
[2025-12-01 16:08:29] Set ATHENA_CORE_NUMBER=12
[2025-12-01 16:08:29] Starting ATLAS job with PandaID=6905026022
[2025-12-01 16:08:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 16:17:14]  *** The last 200 lines of the pilot log: ***
[2025-12-01 16:17:14] 2025-12-02 00:16:28,661 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-01 16:17:14] 2025-12-02 00:16:28,662 | WARNING  | wrong length of table data, x=[1764634249.0, 1764634310.0, 1764634371.0, 1764634432.0], y=[2221.0, 420738.0, 812762.0, 741610.0] (must be same and length>=4)
[2025-12-01 16:17:14] 2025-12-02 00:16:28,662 | INFO     | could have reported an average CPU frequency of 2085 MHz (4 samples)
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | ..............................
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . Timing measurements:
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . get job = 0 s
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . initial setup = 7 s
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . payload setup = 44 s
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . stage-in = 0 s
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . payload execution = 217 s
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . stage-out = 1 s
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . log creation = 0 s
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | ..............................
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6905026022/pilotlog.txt
[2025-12-01 16:17:14] 2025-12-02 00:16:28,679 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-12-01 16:17:14] - Log from pilotlog.txt -
[2025-12-01 16:17:14] 2025-12-02 00:16:28,660 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6905026022/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 16:17:14] 2025-12-02 00:16:28,661 | INFO     | extracted standard info from prmon json
[2025-12-01 16:17:14] 2025-12-02 00:16:28,661 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 16:17:14] 2025-12-02 00:16:28,661 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 16:17:14] 2025-12-02 00:16:28,661 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-01 16:17:14] 2025-12-02 00:16:28,661 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-01 16:17:14] 2025-12-02 00:16:28,662 | WARNING  | wrong length of table data, x=[1764634249.0, 1764634310.0, 1764634371.0, 1764634432.0], y=[2221.0, 420738.0, 812762.0, 741610.0] (must be same and length>=4)
[2025-12-01 16:17:14] 2025-12-02 00:16:28,662 | INFO     | could have reported an average CPU frequency of 2085 MHz (4 samples)
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | ..............................
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . Timing measurements:
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . get job = 0 s
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . initial setup = 7 s
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . payload setup = 44 s
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . stage-in = 0 s
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . payload execution = 217 s
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . stage-out = 1 s
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . log creation = 0 s
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | ..............................
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6905026022/pilotlog.txt
[2025-12-01 16:17:14] 2025-12-02 00:16:28,680 | WARNING  | 
[2025-12-01 16:17:14] [begin log extracts]
[2025-12-01 16:17:14] - Log from pilotlog.txt -
[2025-12-01 16:17:14] 2025-12-02 00:16:28,660 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6905026022/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 16:17:14] 2025-12-02 00:16:28,661 | INFO     | extracted standard info from prmon json
[2025-12-01 16:17:14] 2025-12-02 00:16:28,661 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 16:17:14] 2025-12-02 00:16:28,661 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 16:17:14] 2025-12-02 00:16:28,661 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-01 16:17:14] 2025-12-02 00:16:28,661 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-01 16:17:14] 2025-12-02 00:16:28,662 | WARNING  | wrong length of table data, x=[1764634249.0, 1764634310.0, 1764634371.0, 1764634432.0], y=[2221.0, 420738.0, 812762.0, 741610.0] (must be same and length>=4)
[2025-12-01 16:17:14] 2025-12-02 00:16:28,662 | INFO     | could have reported an average CPU frequency of 2085 MHz (4 samples)
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | ..............................
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . Timing measurements:
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . get job = 0 s
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . initial setup = 7 s
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . payload setup = 44 s
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . stage-in = 0 s
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . payload execution = 217 s
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . stage-out = 1 s
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | . log creation = 0 s
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | ..............................
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-01 16:17:14] 2025-12-02 00:16:28,663 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6905026022/pilotlog.txt
[2025-12-01 16:17:14] [end log extracts]
[2025-12-01 16:17:14] 2025-12-02 00:16:28,680 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-12-01 16:17:14] 2025-12-02 00:16:28,681 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-12-01 16:17:14] 2025-12-02 00:16:28,991 | INFO     | 
[2025-12-01 16:17:14] 2025-12-02 00:16:28,991 | INFO     | job summary report
[2025-12-01 16:17:14] 2025-12-02 00:16:28,991 | INFO     | --------------------------------------------------
[2025-12-01 16:17:14] 2025-12-02 00:16:28,991 | INFO     | PanDA job id: 6905026022
[2025-12-01 16:17:14] 2025-12-02 00:16:28,991 | INFO     | task id: 47538113
[2025-12-01 16:17:14] 2025-12-02 00:16:28,991 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-12-01 16:13:58,019 CRITICAL Transform executor raised TransformValidationExceptio
[2025-12-01 16:17:14] 2025-12-02 00:16:28,991 | INFO     | error 2/2: 1165: Local output file is missing
[2025-12-01 16:17:14] 2025-12-02 00:16:28,991 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 16:17:14] 2025-12-02 00:16:28,991 | INFO     | pilot state: failed 
[2025-12-01 16:17:14] 2025-12-02 00:16:28,991 | INFO     | transexitcode: 65
[2025-12-01 16:17:14] 2025-12-02 00:16:28,991 | INFO     | exeerrorcode: 65
[2025-12-01 16:17:14] 2025-12-02 00:16:28,991 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-12-01 16:17:14] 2025-12-02 00:16:28,992 | INFO     | exitcode: 65
[2025-12-01 16:17:14] 2025-12-02 00:16:28,992 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-12-01 16:17:14] 2025-12-02 00:16:28,992 | INFO     | cpuconsumptiontime: 77 s
[2025-12-01 16:17:14] 2025-12-02 00:16:28,992 | INFO     | nevents: 0
[2025-12-01 16:17:14] 2025-12-02 00:16:28,992 | INFO     | neventsw: 0
[2025-12-01 16:17:14] 2025-12-02 00:16:28,992 | INFO     | pid: 3002723
[2025-12-01 16:17:14] 2025-12-02 00:16:28,992 | INFO     | pgrp: 3002723
[2025-12-01 16:17:14] 2025-12-02 00:16:28,992 | INFO     | corecount: 12
[2025-12-01 16:17:14] 2025-12-02 00:16:28,992 | INFO     | event service: False
[2025-12-01 16:17:14] 2025-12-02 00:16:28,992 | INFO     | sizes: {0: 2283572, 1: 2284311, 2: 2284453, 13: 2284453, 14: 2284771, 23: 2284799, 265: 2308563, 268: 2312853, 269: 2312909, 407: 2313103}
[2025-12-01 16:17:14] 2025-12-02 00:16:28,992 | INFO     | --------------------------------------------------
[2025-12-01 16:17:14] 2025-12-02 00:16:28,992 | INFO     | 
[2025-12-01 16:17:14] 2025-12-02 00:16:28,992 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-12-01 16:17:14] 2025-12-02 00:16:29,009 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 16:17:14] 2025-12-02 00:16:29,009 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 16:17:14] 2025-12-02 00:16:29,009 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 16:17:14] 2025-12-02 00:16:29,010 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 16:17:14] 2025-12-02 00:16:29,010 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 16:17:14] 2025-12-02 00:16:29,010 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 16:17:14] 2025-12-02 00:16:29,010 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 16:17:14] 2025-12-02 00:16:29,010 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 16:17:14] 2025-12-02 00:16:29,010 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 16:17:14] 2025-12-02 00:16:29,010 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 16:17:14] 2025-12-02 00:16:29,010 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 16:17:14] 2025-12-02 00:16:29,010 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 16:17:14] 2025-12-02 00:16:29,010 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 16:17:14] 2025-12-02 00:16:29,010 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 16:17:14] 2025-12-02 00:16:29,010 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 16:17:14] 2025-12-02 00:16:29,010 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 16:17:14] 2025-12-02 00:16:29,010 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 16:17:14] 2025-12-02 00:16:29,010 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 16:17:14] 2025-12-02 00:16:29,011 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 16:17:14] 2025-12-02 00:16:29,011 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 16:17:14] 2025-12-02 00:16:29,011 | INFO     | job 6905026022 has completed (purged errors)
[2025-12-01 16:17:14] 2025-12-02 00:16:29,011 | INFO     | overall cleanup function is called
[2025-12-01 16:17:14] 2025-12-02 00:16:30,018 | INFO     | --- collectZombieJob: --- 10, [3002723]
[2025-12-01 16:17:14] 2025-12-02 00:16:30,019 | INFO     | zombie collector waiting for pid 3002723
[2025-12-01 16:17:14] 2025-12-02 00:16:30,019 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 16:17:14] 2025-12-02 00:16:30,019 | INFO     | collected zombie processes
[2025-12-01 16:17:14] 2025-12-02 00:16:30,019 | INFO     | will attempt to kill all subprocesses of pid=3002723
[2025-12-01 16:17:14] 2025-12-02 00:16:30,504 | INFO     | process IDs to be killed: [3002723] (in reverse order)
[2025-12-01 16:17:14] 2025-12-02 00:16:30,573 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 16:17:14] 2025-12-02 00:16:30,573 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 16:17:14] 2025-12-02 00:16:30,582 | INFO     | did not find any defunct processes belonging to 3002723
[2025-12-01 16:17:14] 2025-12-02 00:16:30,646 | INFO     | did not find any defunct processes belonging to 3002723
[2025-12-01 16:17:14] 2025-12-02 00:16:30,647 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 16:17:14] 2025-12-02 00:16:30,647 | INFO     | ready for new job
[2025-12-01 16:17:14] 2025-12-02 00:16:30,647 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 16:17:14] 2025-12-02 00:16:30,649 | INFO     | ***************************************
[2025-12-01 16:17:14] 2025-12-02 00:16:30,649 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 16:17:14] 2025-12-02 00:16:30,649 | INFO     | ***************************************
[2025-12-01 16:17:14] 2025-12-02 00:16:30,649 | INFO     | 
[2025-12-01 16:17:14] 2025-12-02 00:16:30,692 | INFO     | architecture information:
[2025-12-01 16:17:14] 2025-12-02 00:16:30,701 | INFO     | executing command: cat /etc/os-release
[2025-12-01 16:17:14] 2025-12-02 00:16:30,720 | INFO     | cat /etc/os-release:
[2025-12-01 16:17:14] NAME="CentOS Linux"
[2025-12-01 16:17:14] VERSION="7 (Core)"
[2025-12-01 16:17:14] ID="centos"
[2025-12-01 16:17:14] ID_LIKE="rhel fedora"
[2025-12-01 16:17:14] VERSION_ID="7"
[2025-12-01 16:17:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 16:17:14] ANSI_COLOR="0;31"
[2025-12-01 16:17:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 16:17:14] HOME_URL="https://www.centos.org/"
[2025-12-01 16:17:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 16:17:14] 
[2025-12-01 16:17:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 16:17:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 16:17:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 16:17:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 16:17:14] 
[2025-12-01 16:17:14] 2025-12-02 00:16:30,720 | INFO     | ***************************************
[2025-12-01 16:17:14] 2025-12-02 00:16:31,224 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-12-01 16:17:14] 2025-12-02 00:16:31,258 | INFO     | sufficient remaining disk space (2032724344832 B)
[2025-12-01 16:17:14] 2025-12-02 00:16:31,258 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 16:17:14] 2025-12-02 00:16:31,258 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 16:17:14] 2025-12-02 00:16:31,258 | INFO     | update_server=False
[2025-12-01 16:17:14] 2025-12-02 00:16:31,259 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 16:17:14] 2025-12-02 00:16:31,259 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 16:17:14] 2025-12-02 00:16:31,259 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 16:17:14] 2025-12-02 00:16:31,259 | INFO     | aborting loop
[2025-12-01 16:17:14] 2025-12-02 00:16:31,726 | INFO     | all job control threads have been joined
[2025-12-01 16:17:14] 2025-12-02 00:16:31,894 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 16:17:14] 2025-12-02 00:16:31,939 | INFO     | all payload control threads have been joined
[2025-12-01 16:17:14] 2025-12-02 00:16:32,188 | INFO     | all data control threads have been joined
[2025-12-01 16:17:14] 2025-12-02 00:16:32,270 | INFO     | [job] retrieve thread has finished
[2025-12-01 16:17:14] 2025-12-02 00:16:32,271 | INFO     | [job] job monitor thread has finished
[2025-12-01 16:17:14] 2025-12-02 00:16:32,518 | INFO     | [job] validate thread has finished
[2025-12-01 16:17:14] 2025-12-02 00:16:32,524 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 16:17:14] 2025-12-02 00:16:32,578 | INFO     | [payload] validate_post thread has finished
[2025-12-01 16:17:14] 2025-12-02 00:16:32,732 | INFO     | [job] control thread has finished
[2025-12-01 16:17:14] 2025-12-02 00:16:32,945 | INFO     | [payload] control thread has finished
[2025-12-01 16:17:14] 2025-12-02 00:16:33,025 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 16:17:14] 2025-12-02 00:16:33,156 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 16:17:14] 2025-12-02 00:16:33,194 | INFO     | [data] control thread has finished
[2025-12-01 16:17:14] 2025-12-02 00:16:33,261 | INFO     | [payload] failed_post thread has finished
[2025-12-01 16:17:14] 2025-12-02 00:16:33,267 | INFO     | [data] copytool_out thread has finished
[2025-12-01 16:17:14] 2025-12-02 00:16:33,320 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 16:17:14] 2025-12-02 00:16:33,384 | INFO     | [data] copytool_in thread has finished
[2025-12-01 16:17:14] 2025-12-02 00:16:34,005 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 16:17:14] 2025-12-02 00:16:35,011 | INFO     | [job] queue monitor thread has finished
[2025-12-01 16:17:14] 2025-12-02 00:16:35,903 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 16:17:14] 2025-12-02 00:17:01,305 | INFO     | PID=2995211 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-01 16:17:14] 2025-12-02 00:17:01,314 | INFO     | .. there are 14 such processes running
[2025-12-01 16:17:14] 2025-12-02 00:17:01,315 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 16:17:14] 2025-12-02 00:17:01,315 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 16:17:14] 2025-12-02 00:17:01,315 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 16:17:14] 2025-12-02 00:17:05,717 | INFO     | [monitor] cgroup control has ended
[2025-12-01 16:17:14] 2025-12-02 00:17:07,392 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140171196380992)>', '<ExcThread(monitor, started 140170644924160)>']
[2025-12-01 16:17:14] 2025-12-02 00:17:08,356 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 16:17:14] 2025-12-02 00:17:08,356 | INFO     | [monitor] control thread has ended
[2025-12-01 16:17:14] 2025-12-02 00:17:12,426 | INFO     | all workflow threads have been joined
[2025-12-01 16:17:14] 2025-12-02 00:17:12,426 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 16:17:14] 2025-12-02 00:17:12,427 | INFO     | traces error code: 0
[2025-12-01 16:17:14] 2025-12-02 00:17:12,427 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 16:17:14] 2025-12-02 00:17:12,935 [wrapper] ==== pilot stdout END ====
[2025-12-01 16:17:14] 2025-12-02 00:17:12,953 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 16:17:14] 2025-12-02 00:17:12,981 [wrapper] pilotpid: 2995211
[2025-12-01 16:17:14] 2025-12-02 00:17:13,010 [wrapper] Pilot exit status: 0
[2025-12-01 16:17:14] 2025-12-02 00:17:13,147 [wrapper] pandaids: 6905026022
[2025-12-01 16:17:14] 2025-12-02 00:17:13,820 [wrapper] cleanup supervisor_pilot 2995217 2995212
[2025-12-01 16:17:14] 2025-12-02 00:17:13,823 [wrapper] Test setup, not cleaning
[2025-12-01 16:17:14] 2025-12-02 00:17:13,825 [wrapper] apfmon messages muted
[2025-12-01 16:17:14] 2025-12-02 00:17:13,828 [wrapper] ==== wrapper stdout END ====
[2025-12-01 16:17:14] 2025-12-02 00:17:13,830 [wrapper] ==== wrapper stderr END ====
[2025-12-01 16:17:14]  *** Error codes and diagnostics ***
[2025-12-01 16:17:14]     "exeErrorCode": 65,
[2025-12-01 16:17:14]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-12-01 16:17:14]     "pilotErrorCode": 1305,
[2025-12-01 16:17:14]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-12-01 16:17:14]  *** Listing of results directory ***
[2025-12-01 16:17:14] total 374396
[2025-12-01 16:17:14] -rw-r--r--. 1 boinc boinc    576529 Nov 29 16:16 pilot3.tar.gz
[2025-12-01 16:17:14] -rwx------. 1 boinc boinc     36292 Nov 29 16:18 runpilot2-wrapper.sh
[2025-12-01 16:17:14] -rw-r--r--. 1 boinc boinc      5112 Nov 29 16:23 queuedata.json
[2025-12-01 16:17:14] -rw-r--r--. 1 boinc boinc       100 Dec  1 16:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 16:17:14] -rwxr-xr-x. 1 boinc boinc      7986 Dec  1 16:08 run_atlas
[2025-12-01 16:17:14] -rw-r--r--. 1 boinc boinc       105 Dec  1 16:08 job.xml
[2025-12-01 16:17:14] -rw-r--r--. 1 boinc boinc      6593 Dec  1 16:08 init_data.xml
[2025-12-01 16:17:14] -rw-r--r--. 2 boinc boinc 379119502 Dec  1 16:08 EVNT.47528871._000045.pool.root.1
[2025-12-01 16:17:14] -rw-r--r--. 2 boinc boinc     15847 Dec  1 16:08 start_atlas.sh
[2025-12-01 16:17:14] drwxrwx--x. 2 boinc boinc      4096 Dec  1 16:08 shared
[2025-12-01 16:17:14] -rw-r--r--. 2 boinc boinc    590135 Dec  1 16:08 input.tar.gz
[2025-12-01 16:17:14] -rw-r--r--. 1 boinc boinc         0 Dec  1 16:08 boinc_lockfile
[2025-12-01 16:17:14] -rw-r--r--. 1 boinc boinc      2879 Dec  1 16:08 pandaJob.out
[2025-12-01 16:17:14] -rw-------. 1 boinc boinc    992016 Dec  1 16:09 agis_schedconf.cvmfs.json
[2025-12-01 16:17:14] -rw-------. 1 boinc boinc   1516240 Dec  1 16:09 agis_ddmendpoints.agis.ALL.json
[2025-12-01 16:17:14] drwx------. 5 boinc boinc      4096 Dec  1 16:09 pilot3
[2025-12-01 16:17:14] -rw-r--r--. 1 boinc boinc       524 Dec  1 16:12 boinc_task_state.xml
[2025-12-01 16:17:14] -rw-------. 1 boinc boinc       998 Dec  1 16:14 memory_monitor_summary.json
[2025-12-01 16:17:14] -rw-------. 1 boinc boinc     53149 Dec  1 16:14 log.47538113._002128.job.log.tgz.1
[2025-12-01 16:17:14] -rw-------. 1 boinc boinc        95 Dec  1 16:16 pilot_heartbeat.json
[2025-12-01 16:17:14] -rw-------. 1 boinc boinc      9897 Dec  1 16:16 heartbeat.json
[2025-12-01 16:17:14] -rw-r--r--. 1 boinc boinc      8192 Dec  1 16:17 boinc_mmap_file
[2025-12-01 16:17:14] -rw-r--r--. 1 boinc boinc        23 Dec  1 16:17 wrapper_checkpoint.txt
[2025-12-01 16:17:14] -rw-------. 1 boinc boinc      4823 Dec  1 16:17 pilotlog.txt
[2025-12-01 16:17:14] -rw-------. 1 boinc boinc    120321 Dec  1 16:17 log.47538113._002128.job.log.1
[2025-12-01 16:17:14] -rw-------. 1 boinc boinc       186 Dec  1 16:17 output.list
[2025-12-01 16:17:14] -rw-r--r--. 1 boinc boinc       620 Dec  1 16:17 runtime_log
[2025-12-01 16:17:14] -rw-------. 1 boinc boinc    194560 Dec  1 16:17 result.tar.gz
[2025-12-01 16:17:14] -rw-------. 1 boinc boinc       647 Dec  1 16:17 T7PLDmWKkj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmH5LKDmEZvnFn.diag
[2025-12-01 16:17:14] -rw-r--r--. 1 boinc boinc      8636 Dec  1 16:17 runtime_log.err
[2025-12-01 16:17:14] -rw-r--r--. 1 boinc boinc     22652 Dec  1 16:17 stderr.txt
[2025-12-01 16:17:14] No HITS result produced
[2025-12-01 16:17:14]  *** Contents of shared directory: ***
[2025-12-01 16:17:14] total 371028
[2025-12-01 16:17:14] -rw-r--r--. 2 boinc boinc 379119502 Dec  1 16:08 ATLAS.root_0
[2025-12-01 16:17:14] -rw-r--r--. 2 boinc boinc     15847 Dec  1 16:08 start_atlas.sh
[2025-12-01 16:17:14] -rw-r--r--. 2 boinc boinc    590135 Dec  1 16:08 input.tar.gz
[2025-12-01 16:17:14] -rw-------. 1 boinc boinc    194560 Dec  1 16:17 result.tar.gz
16:17:16 (2991312): run_atlas exited; CPU time 79.725248
16:17:16 (2991312): called boinc_finish(0)

</stderr_txt>
]]>

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