Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:22:51 (31728): wrapper (7.7.26015): starting
16:22:51 (31728): wrapper: running run_atlas (--nthreads 8)
[2025-12-03 16:22:51] Arguments: --nthreads 8
[2025-12-03 16:22:51] Threads: 8
[2025-12-03 16:22:51] Checking for CVMFS
[2025-12-03 16:22:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-03 16:22:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-03 16:22:52] Running cvmfs_config stat atlas.cern.ch
[2025-12-03 16:22:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-03 16:22:53] 2.11.2.0 21112 182430 137388 153601 3 56 17373685 25165824 2273 130560 9 57726653 99.881 30612755 2082 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-03 16:22:53] CVMFS is ok
[2025-12-03 16:22:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-03 16:22:53] Checking for apptainer binary...
[2025-12-03 16:22:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-03 16:22:53] Running /usr/bin/apptainer --version
[2025-12-03 16:22:53] apptainer version 1.3.2-1.el7
[2025-12-03 16:22:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-03 16:22:58] cg-vwn263.simple-grid.lan
[2025-12-03 16:22:58] apptainer works
[2025-12-03 16:22:58] Set ATHENA_PROC_NUMBER=8
[2025-12-03 16:22:58] Set ATHENA_CORE_NUMBER=8
[2025-12-03 16:22:58] Starting ATLAS job with PandaID=6905026012
[2025-12-03 16:22:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-04 12:22:56]  *** The last 200 lines of the pilot log: ***
[2025-12-04 12:22:56] 2025-12-04 11:22:15,290 | INFO     | time since job start (71745s) is within the limit (172800.0s)
[2025-12-04 12:22:56] 2025-12-04 11:22:16,981 | INFO     | monitor loop #4892: job 0:6905026012 is in state 'finished'
[2025-12-04 12:22:56] 2025-12-04 11:22:16,981 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-04 12:22:56] 2025-12-04 11:22:17,299 | INFO     | time since job start (71747s) is within the limit (172800.0s)
[2025-12-04 12:22:56] 2025-12-04 11:22:19,314 | INFO     | time since job start (71749s) is within the limit (172800.0s)
[2025-12-04 12:22:56] 2025-12-04 11:22:19,505 | INFO     | monitor loop #4893: job 0:6905026012 is in state 'finished'
[2025-12-04 12:22:56] 2025-12-04 11:22:19,505 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-04 12:22:56] 2025-12-04 11:22:20,070 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-04 12:22:56] 2025-12-04 11:22:20,072 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-04 12:22:56] 2025-12-04 11:22:20,075 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6905026012/memory_monitor_summary.json (trf name=prmon)
[2025-12-04 12:22:56] 2025-12-04 11:22:20,076 | INFO     | extracted standard info from prmon json
[2025-12-04 12:22:56] 2025-12-04 11:22:20,076 | INFO     | extracted standard memory fields from prmon json
[2025-12-04 12:22:56] 2025-12-04 11:22:20,076 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-04 12:22:56] 2025-12-04 11:22:20,099 | INFO     | fitting pss+swap vs Time
[2025-12-04 12:22:56] 2025-12-04 11:22:20,101 | INFO     | sum of square deviations: 491556847778.5148
[2025-12-04 12:22:56] 2025-12-04 11:22:20,141 | INFO     | sum of deviations: 2560954597149.4365
[2025-12-04 12:22:56] 2025-12-04 11:22:20,141 | INFO     | mean x: 1764811691.5506003
[2025-12-04 12:22:56] 2025-12-04 11:22:20,141 | INFO     | mean y: 3337241.7298456263
[2025-12-04 12:22:56] 2025-12-04 11:22:20,142 | INFO     | intersect: -9191128535.73812
[2025-12-04 12:22:56] 2025-12-04 11:22:20,143 | INFO     | chi2: 18.86939848465582
[2025-12-04 12:22:56] 2025-12-04 11:22:20,145 | INFO     | sum of square deviations: 485260666130.4723
[2025-12-04 12:22:56] 2025-12-04 11:22:20,191 | INFO     | sum of deviations: 3052430753489.149
[2025-12-04 12:22:56] 2025-12-04 11:22:20,191 | INFO     | mean x: 1764811539.055125
[2025-12-04 12:22:56] 2025-12-04 11:22:20,191 | INFO     | mean y: 3349145.2945736432
[2025-12-04 12:22:56] 2025-12-04 11:22:20,191 | INFO     | intersect: -11097828823.405622
[2025-12-04 12:22:56] 2025-12-04 11:22:20,193 | INFO     | chi2: 15.167812530486161
[2025-12-04 12:22:56] 2025-12-04 11:22:20,193 | INFO     | current chi2=15.167812530486161 (change=19.616873093117984 %)
[2025-12-04 12:22:56] 2025-12-04 11:22:20,193 | INFO     | right removable region: 1160
[2025-12-04 12:22:56] 2025-12-04 11:22:20,195 | INFO     | sum of square deviations: 485259918880.4722
[2025-12-04 12:22:56] 2025-12-04 11:22:20,232 | INFO     | sum of deviations: 1978335413345.8794
[2025-12-04 12:22:56] 2025-12-04 11:22:20,233 | INFO     | mean x: 1764811844.055125
[2025-12-04 12:22:56] 2025-12-04 11:22:20,233 | INFO     | mean y: 3351351.3143841517
[2025-12-04 12:22:56] 2025-12-04 11:22:20,233 | INFO     | intersect: -7191534591.545628
[2025-12-04 12:22:56] 2025-12-04 11:22:20,235 | INFO     | chi2: 14.042246362031298
[2025-12-04 12:22:56] 2025-12-04 11:22:20,235 | INFO     | current chi2=14.042246362031298 (change=25.581907799286007 %)
[2025-12-04 12:22:56] 2025-12-04 11:22:20,237 | INFO     | sum of square deviations: 479016990994.88184
[2025-12-04 12:22:56] 2025-12-04 11:22:20,285 | INFO     | sum of deviations: 1514662568056.5347
[2025-12-04 12:22:56] 2025-12-04 11:22:20,285 | INFO     | mean x: 1764811996.5596886
[2025-12-04 12:22:56] 2025-12-04 11:22:20,286 | INFO     | mean y: 3362676.7024221453
[2025-12-04 12:22:56] 2025-12-04 11:22:20,286 | INFO     | intersect: -5577012802.869323
[2025-12-04 12:22:56] 2025-12-04 11:22:20,287 | INFO     | chi2: 11.117616963650566
[2025-12-04 12:22:56] 2025-12-04 11:22:20,287 | INFO     | current chi2=11.117616963650566 (change=20.827361399160544 %)
[2025-12-04 12:22:56] 2025-12-04 11:22:20,287 | INFO     | left removable region: 20
[2025-12-04 12:22:56] 2025-12-04 11:22:20,289 | INFO     | sum of square deviations: 459401256609.7993
[2025-12-04 12:22:56] 2025-12-04 11:22:20,336 | INFO     | sum of deviations: 1883973407831.2678
[2025-12-04 12:22:56] 2025-12-04 11:22:20,336 | INFO     | mean x: 1764812118.5675437
[2025-12-04 12:22:56] 2025-12-04 11:22:20,336 | INFO     | mean y: 3383498.834210526
[2025-12-04 12:22:56] 2025-12-04 11:22:20,336 | INFO     | intersect: -7233991352.370524
[2025-12-04 12:22:56] 2025-12-04 11:22:20,338 | INFO     | chi2: 5.912479821948985
[2025-12-04 12:22:56] 2025-12-04 11:22:20,338 | INFO     | current memory leak: 4.10 B/s (using 1140 data points, chi2=5.91)
[2025-12-04 12:22:56] 2025-12-04 11:22:20,339 | INFO     | could have reported an average CPU frequency of 1999 MHz (40 samples)
[2025-12-04 12:22:56] 2025-12-04 11:22:20,340 | INFO     | ..............................
[2025-12-04 12:22:56] 2025-12-04 11:22:20,340 | INFO     | . Timing measurements:
[2025-12-04 12:22:56] 2025-12-04 11:22:20,340 | INFO     | . get job = 0 s
[2025-12-04 12:22:56] 2025-12-04 11:22:20,340 | INFO     | . initial setup = 13 s
[2025-12-04 12:22:56] 2025-12-04 11:22:20,340 | INFO     | . payload setup = 214 s
[2025-12-04 12:22:56] 2025-12-04 11:22:20,340 | INFO     | . stage-in = 0 s
[2025-12-04 12:22:56] 2025-12-04 11:22:20,340 | INFO     | . payload execution = 71247 s
[2025-12-04 12:22:56] 2025-12-04 11:22:20,340 | INFO     | . stage-out = 7 s
[2025-12-04 12:22:56] 2025-12-04 11:22:20,340 | INFO     | . log creation = 2 s
[2025-12-04 12:22:56] 2025-12-04 11:22:20,340 | INFO     | ..............................
[2025-12-04 12:22:56] 2025-12-04 11:22:20,664 | INFO     | 
[2025-12-04 12:22:56] 2025-12-04 11:22:20,664 | INFO     | job summary report
[2025-12-04 12:22:56] 2025-12-04 11:22:20,664 | INFO     | --------------------------------------------------
[2025-12-04 12:22:56] 2025-12-04 11:22:20,664 | INFO     | PanDA job id: 6905026012
[2025-12-04 12:22:56] 2025-12-04 11:22:20,665 | INFO     | task id: 47538113
[2025-12-04 12:22:56] 2025-12-04 11:22:20,665 | INFO     | errors: (none)
[2025-12-04 12:22:56] 2025-12-04 11:22:20,665 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-04 12:22:56] 2025-12-04 11:22:20,665 | INFO     | pilot state: finished 
[2025-12-04 12:22:56] 2025-12-04 11:22:20,665 | INFO     | transexitcode: 0
[2025-12-04 12:22:56] 2025-12-04 11:22:20,665 | INFO     | exeerrorcode: 0
[2025-12-04 12:22:56] 2025-12-04 11:22:20,665 | INFO     | exeerrordiag: 
[2025-12-04 12:22:56] 2025-12-04 11:22:20,665 | INFO     | exitcode: 0
[2025-12-04 12:22:56] 2025-12-04 11:22:20,665 | INFO     | exitmsg: OK
[2025-12-04 12:22:56] 2025-12-04 11:22:20,665 | INFO     | cpuconsumptiontime: 265722 s
[2025-12-04 12:22:56] 2025-12-04 11:22:20,665 | INFO     | nevents: 1000
[2025-12-04 12:22:56] 2025-12-04 11:22:20,665 | INFO     | neventsw: 0
[2025-12-04 12:22:56] 2025-12-04 11:22:20,666 | INFO     | pid: 10554
[2025-12-04 12:22:56] 2025-12-04 11:22:20,666 | INFO     | pgrp: 10554
[2025-12-04 12:22:56] 2025-12-04 11:22:20,666 | INFO     | corecount: 8
[2025-12-04 12:22:56] 2025-12-04 11:22:20,666 | INFO     | event service: False
[2025-12-04 12:22:56] 2025-12-04 11:22:20,666 | INFO     | sizes: {0: 2284174, 1: 2284429, 12: 2284429, 23: 2284457, 34: 2284485, 44: 2284513, 55: 2284669, 66: 2284697, 76: 2284725, 87: 2284781, 98: 2284809, 102: 2285379, 
[2025-12-04 12:22:56] 2025-12-04 11:22:20,666 | INFO     | --------------------------------------------------
[2025-12-04 12:22:56] 2025-12-04 11:22:20,666 | INFO     | 
[2025-12-04 12:22:56] 2025-12-04 11:22:20,666 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-12-04 12:22:56] 2025-12-04 11:22:21,141 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-04 12:22:56] 2025-12-04 11:22:21,142 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-04 12:22:56] 2025-12-04 11:22:21,142 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-04 12:22:56] 2025-12-04 11:22:21,142 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-04 12:22:56] 2025-12-04 11:22:21,142 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-04 12:22:56] 2025-12-04 11:22:21,142 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-04 12:22:56] 2025-12-04 11:22:21,142 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-04 12:22:56] 2025-12-04 11:22:21,142 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-04 12:22:56] 2025-12-04 11:22:21,142 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-04 12:22:56] 2025-12-04 11:22:21,142 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-04 12:22:56] 2025-12-04 11:22:21,143 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-04 12:22:56] 2025-12-04 11:22:21,143 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-04 12:22:56] 2025-12-04 11:22:21,143 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-04 12:22:56] 2025-12-04 11:22:21,143 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-04 12:22:56] 2025-12-04 11:22:21,143 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-04 12:22:56] 2025-12-04 11:22:21,143 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-04 12:22:56] 2025-12-04 11:22:21,143 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-04 12:22:56] 2025-12-04 11:22:21,143 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-04 12:22:56] 2025-12-04 11:22:21,143 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-04 12:22:56] 2025-12-04 11:22:21,143 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-04 12:22:56] 2025-12-04 11:22:21,143 | INFO     | job 6905026012 has completed (purged errors)
[2025-12-04 12:22:56] 2025-12-04 11:22:21,144 | INFO     | overall cleanup function is called
[2025-12-04 12:22:56] 2025-12-04 11:22:22,164 | INFO     | --- collectZombieJob: --- 10, [10554]
[2025-12-04 12:22:56] 2025-12-04 11:22:22,164 | INFO     | zombie collector waiting for pid 10554
[2025-12-04 12:22:56] 2025-12-04 11:22:22,164 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-04 12:22:56] 2025-12-04 11:22:22,165 | INFO     | collected zombie processes
[2025-12-04 12:22:56] 2025-12-04 11:22:22,165 | INFO     | will attempt to kill all subprocesses of pid=10554
[2025-12-04 12:22:56] 2025-12-04 11:22:22,312 | INFO     | process IDs to be killed: [10554] (in reverse order)
[2025-12-04 12:22:56] 2025-12-04 11:22:23,224 | WARNING  | found no corresponding commands to process id(s)
[2025-12-04 12:22:56] 2025-12-04 11:22:23,224 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-04 12:22:56] 2025-12-04 11:22:23,227 | INFO     | did not find any defunct processes belonging to 10554
[2025-12-04 12:22:56] 2025-12-04 11:22:23,230 | INFO     | did not find any defunct processes belonging to 10554
[2025-12-04 12:22:56] 2025-12-04 11:22:23,263 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-04 12:22:56] 2025-12-04 11:22:23,264 | INFO     | ready for new job
[2025-12-04 12:22:56] 2025-12-04 11:22:23,264 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-04 12:22:56] 2025-12-04 11:22:23,269 | INFO     | ***************************************
[2025-12-04 12:22:56] 2025-12-04 11:22:23,269 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-04 12:22:56] 2025-12-04 11:22:23,269 | INFO     | ***************************************
[2025-12-04 12:22:56] 2025-12-04 11:22:23,269 | INFO     | 
[2025-12-04 12:22:56] 2025-12-04 11:22:23,270 | INFO     | pilot is running in a VM
[2025-12-04 12:22:56] 2025-12-04 11:22:23,270 | INFO     | architecture information:
[2025-12-04 12:22:56] 2025-12-04 11:22:23,280 | INFO     | executing command: cat /etc/os-release
[2025-12-04 12:22:56] 2025-12-04 11:22:23,527 | INFO     | cat /etc/os-release:
[2025-12-04 12:22:56] NAME="CentOS Linux"
[2025-12-04 12:22:56] VERSION="7 (Core)"
[2025-12-04 12:22:56] ID="centos"
[2025-12-04 12:22:56] ID_LIKE="rhel fedora"
[2025-12-04 12:22:56] VERSION_ID="7"
[2025-12-04 12:22:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-04 12:22:56] ANSI_COLOR="0;31"
[2025-12-04 12:22:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-04 12:22:56] HOME_URL="https://www.centos.org/"
[2025-12-04 12:22:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-04 12:22:56] 
[2025-12-04 12:22:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-04 12:22:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-04 12:22:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-04 12:22:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-04 12:22:56] 
[2025-12-04 12:22:56] 2025-12-04 11:22:23,527 | INFO     | ***************************************
[2025-12-04 12:22:56] 2025-12-04 11:22:24,030 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-12-04 12:22:56] 2025-12-04 11:22:24,205 | INFO     | sufficient remaining disk space (494900609024 B)
[2025-12-04 12:22:56] 2025-12-04 11:22:24,205 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-04 12:22:56] 2025-12-04 11:22:24,205 | INFO     | current server update state: UPDATING_FINAL
[2025-12-04 12:22:56] 2025-12-04 11:22:24,205 | INFO     | update_server=False
[2025-12-04 12:22:56] 2025-12-04 11:22:24,206 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-04 12:22:56] 2025-12-04 11:22:24,206 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-04 12:22:56] 2025-12-04 11:22:24,209 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-04 12:22:56] 2025-12-04 11:22:24,522 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-04 12:22:56] 2025-12-04 11:22:24,522 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-04 12:22:56] 2025-12-04 11:22:24,523 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-04 12:22:56] 2025-12-04 11:22:24,523 | INFO     | will abort loop
[2025-12-04 12:22:56] 2025-12-04 11:22:24,966 | INFO     | all payload control threads have been joined
[2025-12-04 12:22:56] 2025-12-04 11:22:25,078 | INFO     | all data control threads have been joined
[2025-12-04 12:22:56] 2025-12-04 11:22:25,149 | INFO     | all job control threads have been joined
[2025-12-04 12:22:56] 2025-12-04 11:22:25,211 | INFO     | [job] retrieve thread has finished
[2025-12-04 12:22:56] 2025-12-04 11:22:25,320 | INFO     | [payload] validate_post thread has finished
[2025-12-04 12:22:56] 2025-12-04 11:22:25,479 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-04 12:22:56] 2025-12-04 11:22:25,527 | INFO     | [job] job monitor thread has finished
[2025-12-04 12:22:56] 2025-12-04 11:22:25,585 | INFO     | [data] copytool_in thread has finished
[2025-12-04 12:22:56] 2025-12-04 11:22:25,798 | INFO     | [payload] failed_post thread has finished
[2025-12-04 12:22:56] 2025-12-04 11:22:25,803 | INFO     | [payload] execute_payloads thread has finished
[2025-12-04 12:22:56] 2025-12-04 11:22:25,942 | INFO     | [payload] validate_pre thread has finished
[2025-12-04 12:22:56] 2025-12-04 11:22:25,969 | INFO     | [job] create_data_payload thread has finished
[2025-12-04 12:22:56] 2025-12-04 11:22:25,972 | INFO     | [payload] control thread has finished
[2025-12-04 12:22:56] 2025-12-04 11:22:26,084 | INFO     | [data] control thread has finished
[2025-12-04 12:22:56] 2025-12-04 11:22:26,155 | INFO     | [job] control thread has finished
[2025-12-04 12:22:56] 2025-12-04 11:22:26,213 | INFO     | [data] copytool_out thread has finished
[2025-12-04 12:22:56] 2025-12-04 11:22:26,256 | INFO     | [job] validate thread has finished
[2025-12-04 12:22:56] 2025-12-04 11:22:26,460 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-04 12:22:56] 2025-12-04 11:22:26,485 | INFO     | [job] queue monitor thread has finished
[2025-12-04 12:22:56] 2025-12-04 11:22:28,218 | INFO     | [data] queue_monitor thread has finished
[2025-12-04 12:22:56] 2025-12-04 11:22:33,932 | INFO     | [monitor] cgroup control has ended
[2025-12-04 12:22:56] 2025-12-04 11:22:34,764 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139723440985920)>', '<ExcThread(monitor, started 139722835867392)>']
[2025-12-04 12:22:56] 2025-12-04 11:22:39,789 | INFO     | all workflow threads have been joined
[2025-12-04 12:22:56] 2025-12-04 11:22:39,789 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-04 12:22:56] 2025-12-04 11:22:39,790 | INFO     | traces error code: 0
[2025-12-04 12:22:56] 2025-12-04 11:22:39,790 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-04 12:22:56] 2025-12-04 11:22:52,504 | INFO     | PID=3214 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-04 12:22:56] 2025-12-04 11:22:52,504 | INFO     | .. there are 9 such processes running
[2025-12-04 12:22:56] 2025-12-04 11:22:52,505 | INFO     | found 0 job(s) in 20 queues
[2025-12-04 12:22:56] 2025-12-04 11:22:52,505 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-04 12:22:56] 2025-12-04 11:22:52,505 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-04 12:22:56] 2025-12-04 11:22:52,505 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-04 12:22:56] 2025-12-04 11:22:52,505 | INFO     | [monitor] control thread has ended
[2025-12-04 12:22:56] 2025-12-04 11:22:52,812 [wrapper] ==== pilot stdout END ====
[2025-12-04 12:22:56] 2025-12-04 11:22:52,854 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-04 12:22:56] 2025-12-04 11:22:52,911 [wrapper] pilotpid: 3214
[2025-12-04 12:22:56] 2025-12-04 11:22:52,979 [wrapper] Pilot exit status: 0
[2025-12-04 12:22:56] 2025-12-04 11:22:53,295 [wrapper] pandaids: 6905026012
[2025-12-04 12:22:56] 2025-12-04 11:22:54,183 [wrapper] cleanup supervisor_pilot 12712 3215
[2025-12-04 12:22:56] 2025-12-04 11:22:54,290 [wrapper] Test setup, not cleaning
[2025-12-04 12:22:56] 2025-12-04 11:22:54,378 [wrapper] apfmon messages muted
[2025-12-04 12:22:56] 2025-12-04 11:22:54,461 [wrapper] ==== wrapper stdout END ====
[2025-12-04 12:22:56] 2025-12-04 11:22:54,507 [wrapper] ==== wrapper stderr END ====
[2025-12-04 12:22:56]  *** Error codes and diagnostics ***
[2025-12-04 12:22:57]     "exeErrorCode": 0,
[2025-12-04 12:22:57]     "exeErrorDiag": "",
[2025-12-04 12:22:57]     "pilotErrorCode": 0,
[2025-12-04 12:22:57]     "pilotErrorDiag": "",
[2025-12-04 12:22:57]  *** Listing of results directory ***
[2025-12-04 12:22:57] total 1074288
[2025-12-04 12:22:57] -rw-r--r--. 1 boinc boinc    576529 Nov 30 01:16 pilot3.tar.gz
[2025-12-04 12:22:57] -rwx------. 1 boinc boinc     36292 Nov 30 01:18 runpilot2-wrapper.sh
[2025-12-04 12:22:57] -rw-r--r--. 1 boinc boinc      5112 Nov 30 01:23 queuedata.json
[2025-12-04 12:22:57] -rw-r--r--. 1 boinc boinc       100 Dec  3 16:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-04 12:22:57] -rwxr-xr-x. 1 boinc boinc      7986 Dec  3 16:22 run_atlas
[2025-12-04 12:22:57] -rw-r--r--. 1 boinc boinc       105 Dec  3 16:22 job.xml
[2025-12-04 12:22:57] -rw-r--r--. 1 boinc boinc      6392 Dec  3 16:22 init_data.xml
[2025-12-04 12:22:57] -rw-r--r--. 2 boinc boinc 378360480 Dec  3 16:22 EVNT.47528871._000040.pool.root.1
[2025-12-04 12:22:57] -rw-r--r--. 2 boinc boinc     15847 Dec  3 16:22 start_atlas.sh
[2025-12-04 12:22:57] drwxrwx--x. 2 boinc boinc        68 Dec  3 16:22 shared
[2025-12-04 12:22:57] -rw-r--r--. 2 boinc boinc    590132 Dec  3 16:22 input.tar.gz
[2025-12-04 12:22:57] -rw-r--r--. 1 boinc boinc         0 Dec  3 16:22 boinc_lockfile
[2025-12-04 12:22:57] -rw-r--r--. 1 boinc boinc      2879 Dec  3 16:22 pandaJob.out
[2025-12-04 12:22:57] -rw-------. 1 boinc boinc    985783 Dec  3 16:26 agis_schedconf.cvmfs.json
[2025-12-04 12:22:57] drwx------. 5 boinc boinc      4096 Dec  3 16:26 pilot3
[2025-12-04 12:22:57] -rw-r--r--. 1 boinc boinc       533 Dec  4 12:03 boinc_task_state.xml
[2025-12-04 12:22:57] -rw-------. 1 boinc boinc 693816327 Dec  4 12:19 HITS.47538113._002118.pool.root.1
[2025-12-04 12:22:57] -rw-------. 1 boinc boinc      1032 Dec  4 12:20 memory_monitor_summary.json
[2025-12-04 12:22:57] -rw-------. 1 boinc boinc   1516240 Dec  4 12:20 agis_ddmendpoints.agis.ALL.json
[2025-12-04 12:22:57] -rw-------. 1 boinc boinc   2407176 Dec  4 12:20 log.47538113._002118.job.log.tgz.1
[2025-12-04 12:22:57] -rw-------. 1 boinc boinc        95 Dec  4 12:22 pilot_heartbeat.json
[2025-12-04 12:22:57] -rw-------. 1 boinc boinc     27177 Dec  4 12:22 heartbeat.json
[2025-12-04 12:22:57] -rw-r--r--. 1 boinc boinc        29 Dec  4 12:22 wrapper_checkpoint.txt
[2025-12-04 12:22:57] -rw-r--r--. 1 boinc boinc      8192 Dec  4 12:22 boinc_mmap_file
[2025-12-04 12:22:57] -rw-------. 1 boinc boinc       819 Dec  4 12:22 pilotlog.txt
[2025-12-04 12:22:57] -rw-------. 1 boinc boinc   9578723 Dec  4 12:22 log.47538113._002118.job.log.1
[2025-12-04 12:22:57] -rw-------. 1 boinc boinc       353 Dec  4 12:22 output.list
[2025-12-04 12:22:57] -rw-r--r--. 1 boinc boinc       620 Dec  4 12:22 runtime_log
[2025-12-04 12:22:57] -rw-------. 1 boinc boinc  12021760 Dec  4 12:22 result.tar.gz
[2025-12-04 12:22:57] -rw-r--r--. 1 boinc boinc      8833 Dec  4 12:22 runtime_log.err
[2025-12-04 12:22:57] -rw-------. 1 boinc boinc       661 Dec  4 12:22 1D1KDmWKkj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmA5LKDmDWWNUo.diag
[2025-12-04 12:22:57] -rw-r--r--. 1 boinc boinc     21204 Dec  4 12:22 stderr.txt
[2025-12-04 12:22:57] HITS file was successfully produced:
[2025-12-04 12:22:57] -rw-------. 1 boinc boinc 693816327 Dec  4 12:19 shared/HITS.pool.root.1
[2025-12-04 12:22:57]  *** Contents of shared directory: ***
[2025-12-04 12:22:57] total 1059388
[2025-12-04 12:22:57] -rw-r--r--. 2 boinc boinc 378360480 Dec  3 16:22 ATLAS.root_0
[2025-12-04 12:22:57] -rw-r--r--. 2 boinc boinc     15847 Dec  3 16:22 start_atlas.sh
[2025-12-04 12:22:57] -rw-r--r--. 2 boinc boinc    590132 Dec  3 16:22 input.tar.gz
[2025-12-04 12:22:57] -rw-------. 1 boinc boinc 693816327 Dec  4 12:19 HITS.pool.root.1
[2025-12-04 12:22:57] -rw-------. 1 boinc boinc  12021760 Dec  4 12:22 result.tar.gz
12:22:59 (31728): run_atlas exited; CPU time 266096.569462
12:22:59 (31728): called boinc_finish(0)

</stderr_txt>
]]>

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