Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:01:06 (14003): wrapper (7.7.26015): starting
00:01:06 (14003): wrapper: running run_atlas (--nthreads 8)
[2025-12-02 00:01:06] Arguments: --nthreads 8
[2025-12-02 00:01:06] Threads: 8
[2025-12-02 00:01:06] Checking for CVMFS
[2025-12-02 00:01:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 00:01:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 00:01:06] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 00:01:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 00:01:06] 2.11.0.0 5503 73328 96892 153534 0 75 2315995 4096000 518 130560 1 5580132 99.540 6504282 655 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-02 00:01:06] CVMFS is ok
[2025-12-02 00:01:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 00:01:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-02 00:01:06] Further information can be found at the LHC@home message board.
[2025-12-02 00:01:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 00:01:06] Checking for apptainer binary...
[2025-12-02 00:01:06] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-02 00:01:06] apptainer is not installed, using version from CVMFS
[2025-12-02 00:01:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 00:01:06] WARNING: Environment variable TMPDIR already has value [/tmp/job_10941943/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node266
[2025-12-02 00:01:06] apptainer works
[2025-12-02 00:01:06] Set ATHENA_PROC_NUMBER=8
[2025-12-02 00:01:06] Set ATHENA_CORE_NUMBER=8
[2025-12-02 00:01:06] Starting ATLAS job with PandaID=6905333474
[2025-12-02 00:01:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10941943/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 04:41:45]  *** The last 200 lines of the pilot log: ***
[2025-12-02 04:41:45] 2025-12-02 03:40:54,769 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-02 04:41:45] 2025-12-02 03:40:55,627 | INFO     | time since job start (16784s) is within the limit (172800.0s)
[2025-12-02 04:41:45] 2025-12-02 03:40:55,851 | INFO     | monitor loop #1185: job 0:6905333474 is in state 'finished'
[2025-12-02 04:41:45] 2025-12-02 03:40:55,851 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 04:41:45] 2025-12-02 03:40:56,809 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 04:41:45] 2025-12-02 03:40:56,817 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2363.8211484375
[2025-12-02 04:41:45] 2025-12-02 03:40:56,828 | INFO     | using path: /tmp/job_10941943/atlas/pilot/slots/0/PanDA_Pilot-6905333474/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 04:41:45] 2025-12-02 03:40:56,828 | INFO     | extracted standard info from prmon json
[2025-12-02 04:41:45] 2025-12-02 03:40:56,828 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 04:41:45] 2025-12-02 03:40:56,828 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 04:41:45] 2025-12-02 03:40:56,831 | INFO     | fitting pss+swap vs Time
[2025-12-02 04:41:45] 2025-12-02 03:40:56,831 | INFO     | sum of square deviations: 6448679050.0
[2025-12-02 04:41:45] 2025-12-02 03:40:56,832 | INFO     | sum of deviations: 180474195509.0
[2025-12-02 04:41:45] 2025-12-02 03:40:56,832 | INFO     | mean x: 1764638450.0
[2025-12-02 04:41:45] 2025-12-02 03:40:56,832 | INFO     | mean y: 3420163.410909091
[2025-12-02 04:41:45] 2025-12-02 03:40:56,832 | INFO     | intersect: -49382152007.06309
[2025-12-02 04:41:45] 2025-12-02 03:40:56,832 | INFO     | chi2: 2.973587920642596
[2025-12-02 04:41:45] 2025-12-02 03:40:56,833 | INFO     | sum of square deviations: 6103286527.5
[2025-12-02 04:41:45] 2025-12-02 03:40:56,834 | INFO     | sum of deviations: 230905181880.5
[2025-12-02 04:41:45] 2025-12-02 03:40:56,834 | INFO     | mean x: 1764638297.5
[2025-12-02 04:41:45] 2025-12-02 03:40:56,834 | INFO     | mean y: 3442202.040740741
[2025-12-02 04:41:45] 2025-12-02 03:40:56,834 | INFO     | intersect: -66757986284.331985
[2025-12-02 04:41:45] 2025-12-02 03:40:56,834 | INFO     | chi2: 1.6042334849336861
[2025-12-02 04:41:45] 2025-12-02 03:40:56,834 | INFO     | current chi2=1.6042334849336861 (change=46.050578367058705 %)
[2025-12-02 04:41:45] 2025-12-02 03:40:56,834 | INFO     | sum of square deviations: 5770452380.0
[2025-12-02 04:41:45] 2025-12-02 03:40:56,835 | INFO     | sum of deviations: 214293021533.0
[2025-12-02 04:41:45] 2025-12-02 03:40:56,835 | INFO     | mean x: 1764638145.0
[2025-12-02 04:41:45] 2025-12-02 03:40:56,835 | INFO     | mean y: 3434603.9169811322
[2025-12-02 04:41:45] 2025-12-02 03:40:56,835 | INFO     | intersect: -65528626853.704506
[2025-12-02 04:41:45] 2025-12-02 03:40:56,835 | INFO     | chi2: 1.596725290009965
[2025-12-02 04:41:45] 2025-12-02 03:40:56,835 | INFO     | current chi2=1.596725290009965 (change=0.46802382534929926 %)
[2025-12-02 04:41:45] 2025-12-02 03:40:56,835 | INFO     | right removable region: 264
[2025-12-02 04:41:45] 2025-12-02 03:40:56,836 | INFO     | sum of square deviations: 6103286527.5
[2025-12-02 04:41:45] 2025-12-02 03:40:56,837 | INFO     | sum of deviations: 116969486922.5
[2025-12-02 04:41:45] 2025-12-02 03:40:56,837 | INFO     | mean x: 1764638602.5
[2025-12-02 04:41:45] 2025-12-02 03:40:56,837 | INFO     | mean y: 3448000.225925926
[2025-12-02 04:41:45] 2025-12-02 03:40:56,837 | INFO     | intersect: -33815850996.80325
[2025-12-02 04:41:45] 2025-12-02 03:40:56,837 | INFO     | chi2: 1.461228976602861
[2025-12-02 04:41:45] 2025-12-02 03:40:56,837 | INFO     | current chi2=1.461228976602861 (change=50.85973525588281 %)
[2025-12-02 04:41:45] 2025-12-02 03:40:56,837 | INFO     | sum of square deviations: 5770452380.0
[2025-12-02 04:41:45] 2025-12-02 03:40:56,838 | INFO     | sum of deviations: 100813796468.00003
[2025-12-02 04:41:45] 2025-12-02 03:40:56,838 | INFO     | mean x: 1764638755.0
[2025-12-02 04:41:45] 2025-12-02 03:40:56,838 | INFO     | mean y: 3455394.0566037735
[2025-12-02 04:41:45] 2025-12-02 03:40:56,838 | INFO     | intersect: -30826004858.09004
[2025-12-02 04:41:45] 2025-12-02 03:40:56,838 | INFO     | chi2: 1.4399637890108559
[2025-12-02 04:41:45] 2025-12-02 03:40:56,839 | INFO     | current chi2=1.4399637890108559 (change=1.45529468225052 %)
[2025-12-02 04:41:45] 2025-12-02 03:40:56,839 | INFO     | left removable region: 20
[2025-12-02 04:41:45] 2025-12-02 03:40:56,839 | INFO     | sum of square deviations: 4504437945.0
[2025-12-02 04:41:45] 2025-12-02 03:40:56,840 | INFO     | sum of deviations: 109313343799.50002
[2025-12-02 04:41:45] 2025-12-02 03:40:56,840 | INFO     | mean x: 1764638724.5
[2025-12-02 04:41:45] 2025-12-02 03:40:56,840 | INFO     | mean y: 3484275.9139344264
[2025-12-02 04:41:45] 2025-12-02 03:40:56,840 | INFO     | intersect: -42820628727.41876
[2025-12-02 04:41:45] 2025-12-02 03:40:56,840 | INFO     | chi2: 0.025205072083883378
[2025-12-02 04:41:45] 2025-12-02 03:40:56,840 | INFO     | current memory leak: 24.27 B/s (using 244 data points, chi2=0.03)
[2025-12-02 04:41:45] 2025-12-02 03:40:56,840 | INFO     | could have reported an average CPU frequency of 2473 MHz (13 samples)
[2025-12-02 04:41:45] 2025-12-02 03:40:56,840 | INFO     | ..............................
[2025-12-02 04:41:45] 2025-12-02 03:40:56,840 | INFO     | . Timing measurements:
[2025-12-02 04:41:45] 2025-12-02 03:40:56,840 | INFO     | . get job = 0 s
[2025-12-02 04:41:45] 2025-12-02 03:40:56,840 | INFO     | . initial setup = 1 s
[2025-12-02 04:41:45] 2025-12-02 03:40:56,840 | INFO     | . payload setup = 4 s
[2025-12-02 04:41:45] 2025-12-02 03:40:56,840 | INFO     | . stage-in = 0 s
[2025-12-02 04:41:45] 2025-12-02 03:40:56,840 | INFO     | . payload execution = 16754 s
[2025-12-02 04:41:45] 2025-12-02 03:40:56,840 | INFO     | . stage-out = 1 s
[2025-12-02 04:41:45] 2025-12-02 03:40:56,840 | INFO     | . log creation = 0 s
[2025-12-02 04:41:45] 2025-12-02 03:40:56,841 | INFO     | ..............................
[2025-12-02 04:41:45] 2025-12-02 03:40:57,331 | INFO     | 
[2025-12-02 04:41:45] 2025-12-02 03:40:57,332 | INFO     | job summary report
[2025-12-02 04:41:45] 2025-12-02 03:40:57,332 | INFO     | --------------------------------------------------
[2025-12-02 04:41:45] 2025-12-02 03:40:57,332 | INFO     | PanDA job id: 6905333474
[2025-12-02 04:41:45] 2025-12-02 03:40:57,332 | INFO     | task id: 47530725
[2025-12-02 04:41:45] 2025-12-02 03:40:57,332 | INFO     | errors: (none)
[2025-12-02 04:41:45] 2025-12-02 03:40:57,332 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 04:41:45] 2025-12-02 03:40:57,332 | INFO     | pilot state: finished 
[2025-12-02 04:41:45] 2025-12-02 03:40:57,332 | INFO     | transexitcode: 0
[2025-12-02 04:41:45] 2025-12-02 03:40:57,332 | INFO     | exeerrorcode: 0
[2025-12-02 04:41:45] 2025-12-02 03:40:57,332 | INFO     | exeerrordiag: 
[2025-12-02 04:41:45] 2025-12-02 03:40:57,332 | INFO     | exitcode: 0
[2025-12-02 04:41:45] 2025-12-02 03:40:57,332 | INFO     | exitmsg: OK
[2025-12-02 04:41:45] 2025-12-02 03:40:57,332 | INFO     | cpuconsumptiontime: 128814 s
[2025-12-02 04:41:45] 2025-12-02 03:40:57,332 | INFO     | nevents: 1000
[2025-12-02 04:41:45] 2025-12-02 03:40:57,332 | INFO     | neventsw: 0
[2025-12-02 04:41:45] 2025-12-02 03:40:57,332 | INFO     | pid: 28141
[2025-12-02 04:41:45] 2025-12-02 03:40:57,332 | INFO     | pgrp: 28141
[2025-12-02 04:41:45] 2025-12-02 03:40:57,332 | INFO     | corecount: 8
[2025-12-02 04:41:45] 2025-12-02 03:40:57,332 | INFO     | event service: False
[2025-12-02 04:41:45] 2025-12-02 03:40:57,332 | INFO     | sizes: {0: 2284524, 2: 2284786, 11: 2284814, 16762: 2336520, 16764: 2345544, 16768: 2345600, 16772: 2345974}
[2025-12-02 04:41:45] 2025-12-02 03:40:57,332 | INFO     | --------------------------------------------------
[2025-12-02 04:41:45] 2025-12-02 03:40:57,332 | INFO     | 
[2025-12-02 04:41:45] 2025-12-02 03:40:57,333 | INFO     | executing command: ls -lF /tmp/job_10941943/atlas/pilot/slots/0
[2025-12-02 04:41:45] 2025-12-02 03:40:57,342 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 04:41:45] 2025-12-02 03:40:57,342 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 04:41:45] 2025-12-02 03:40:57,342 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 04:41:45] 2025-12-02 03:40:57,342 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 04:41:45] 2025-12-02 03:40:57,342 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 04:41:45] 2025-12-02 03:40:57,342 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 04:41:45] 2025-12-02 03:40:57,342 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 04:41:45] 2025-12-02 03:40:57,342 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 04:41:45] 2025-12-02 03:40:57,342 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 04:41:45] 2025-12-02 03:40:57,342 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 04:41:45] 2025-12-02 03:40:57,342 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 04:41:45] 2025-12-02 03:40:57,343 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 04:41:45] 2025-12-02 03:40:57,343 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 04:41:45] 2025-12-02 03:40:57,343 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 04:41:45] 2025-12-02 03:40:57,343 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 04:41:45] 2025-12-02 03:40:57,343 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 04:41:45] 2025-12-02 03:40:57,343 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 04:41:45] 2025-12-02 03:40:57,343 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 04:41:45] 2025-12-02 03:40:57,343 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 04:41:45] 2025-12-02 03:40:57,343 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 04:41:45] 2025-12-02 03:40:57,343 | INFO     | job 6905333474 has completed (purged errors)
[2025-12-02 04:41:45] 2025-12-02 03:40:57,343 | INFO     | overall cleanup function is called
[2025-12-02 04:41:45] 2025-12-02 03:40:58,351 | INFO     | --- collectZombieJob: --- 10, [28141]
[2025-12-02 04:41:45] 2025-12-02 03:40:58,351 | INFO     | zombie collector waiting for pid 28141
[2025-12-02 04:41:45] 2025-12-02 03:40:58,351 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 04:41:45] 2025-12-02 03:40:58,351 | INFO     | collected zombie processes
[2025-12-02 04:41:45] 2025-12-02 03:40:58,351 | INFO     | will attempt to kill all subprocesses of pid=28141
[2025-12-02 04:41:45] 2025-12-02 03:40:58,498 | INFO     | process IDs to be killed: [28141] (in reverse order)
[2025-12-02 04:41:45] 2025-12-02 03:40:58,542 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 04:41:45] 2025-12-02 03:40:58,542 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 04:41:45] 2025-12-02 03:40:58,547 | INFO     | did not find any defunct processes belonging to 28141
[2025-12-02 04:41:45] 2025-12-02 03:40:58,552 | INFO     | did not find any defunct processes belonging to 28141
[2025-12-02 04:41:45] 2025-12-02 03:40:58,552 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 04:41:45] 2025-12-02 03:40:58,552 | INFO     | ready for new job
[2025-12-02 04:41:45] 2025-12-02 03:40:58,552 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 04:41:45] 2025-12-02 03:40:58,554 | INFO     | ***************************************
[2025-12-02 04:41:45] 2025-12-02 03:40:58,554 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 04:41:45] 2025-12-02 03:40:58,554 | INFO     | ***************************************
[2025-12-02 04:41:45] 2025-12-02 03:40:58,554 | INFO     | 
[2025-12-02 04:41:45] 2025-12-02 03:40:58,570 | INFO     | architecture information:
[2025-12-02 04:41:45] 2025-12-02 03:40:58,570 | INFO     | executing command: cat /etc/os-release
[2025-12-02 04:41:45] 2025-12-02 03:40:58,578 | INFO     | cat /etc/os-release:
[2025-12-02 04:41:45] NAME="CentOS Linux"
[2025-12-02 04:41:45] VERSION="7 (Core)"
[2025-12-02 04:41:45] ID="centos"
[2025-12-02 04:41:45] ID_LIKE="rhel fedora"
[2025-12-02 04:41:45] VERSION_ID="7"
[2025-12-02 04:41:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 04:41:45] ANSI_COLOR="0;31"
[2025-12-02 04:41:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 04:41:45] HOME_URL="https://www.centos.org/"
[2025-12-02 04:41:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 04:41:45] 
[2025-12-02 04:41:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 04:41:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 04:41:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 04:41:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 04:41:45] 
[2025-12-02 04:41:45] 2025-12-02 03:40:58,578 | INFO     | ***************************************
[2025-12-02 04:41:45] 2025-12-02 03:40:59,081 | INFO     | executing command: df -mP /tmp/job_10941943/atlas/pilot/slots/0
[2025-12-02 04:41:45] 2025-12-02 03:40:59,088 | INFO     | sufficient remaining disk space (227703521280 B)
[2025-12-02 04:41:45] 2025-12-02 03:40:59,089 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 04:41:45] 2025-12-02 03:40:59,089 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 04:41:45] 2025-12-02 03:40:59,089 | INFO     | update_server=False
[2025-12-02 04:41:45] 2025-12-02 03:40:59,089 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 04:41:45] 2025-12-02 03:40:59,089 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 04:41:45] 2025-12-02 03:40:59,362 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 04:41:45] 2025-12-02 03:40:59,362 | INFO     | aborting loop
[2025-12-02 04:41:45] 2025-12-02 03:40:59,565 | INFO     | all job control threads have been joined
[2025-12-02 04:41:45] 2025-12-02 03:40:59,984 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 04:41:45] 2025-12-02 03:41:00,003 | INFO     | all payload control threads have been joined
[2025-12-02 04:41:45] 2025-12-02 03:41:00,094 | INFO     | [job] retrieve thread has finished
[2025-12-02 04:41:45] 2025-12-02 03:41:00,124 | INFO     | all data control threads have been joined
[2025-12-02 04:41:45] 2025-12-02 03:41:00,367 | INFO     | [job] job monitor thread has finished
[2025-12-02 04:41:45] 2025-12-02 03:41:00,381 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 04:41:45] 2025-12-02 03:41:00,558 | INFO     | [data] copytool_in thread has finished
[2025-12-02 04:41:45] 2025-12-02 03:41:00,571 | INFO     | [job] control thread has finished
[2025-12-02 04:41:45] 2025-12-02 03:41:00,637 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 04:41:45] 2025-12-02 03:41:00,642 | INFO     | [payload] failed_post thread has finished
[2025-12-02 04:41:45] 2025-12-02 03:41:01,008 | INFO     | [payload] control thread has finished
[2025-12-02 04:41:45] 2025-12-02 03:41:01,130 | INFO     | [data] control thread has finished
[2025-12-02 04:41:45] 2025-12-02 03:41:01,150 | INFO     | [job] validate thread has finished
[2025-12-02 04:41:45] 2025-12-02 03:41:01,234 | INFO     | [payload] validate_post thread has finished
[2025-12-02 04:41:45] 2025-12-02 03:41:01,557 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 04:41:45] 2025-12-02 03:41:01,578 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 04:41:45] 2025-12-02 03:41:01,901 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 04:41:45] 2025-12-02 03:41:01,989 | INFO     | [data] copytool_out thread has finished
[2025-12-02 04:41:45] 2025-12-02 03:41:02,907 | INFO     | [job] queue monitor thread has finished
[2025-12-02 04:41:45] 2025-12-02 03:41:03,094 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 04:41:45] 2025-12-02 03:41:28,906 | INFO     | PID=18790 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 04:41:45] 2025-12-02 03:41:28,907 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 04:41:45] 2025-12-02 03:41:28,907 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 04:41:45] 2025-12-02 03:41:28,907 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 04:41:45] 2025-12-02 03:41:39,412 | INFO     | [monitor] cgroup control has ended
[2025-12-02 04:41:45] 2025-12-02 03:41:39,894 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-12-02 04:41:45] 2025-12-02 03:41:39,962 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 04:41:45] 2025-12-02 03:41:39,962 | INFO     | [monitor] control thread has ended
[2025-12-02 04:41:45] 2025-12-02 03:41:44,919 | INFO     | all workflow threads have been joined
[2025-12-02 04:41:45] 2025-12-02 03:41:44,919 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 04:41:45] 2025-12-02 03:41:44,919 | INFO     | traces error code: 0
[2025-12-02 04:41:45] 2025-12-02 03:41:44,919 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 04:41:45] 2025-12-02 03:41:44,979 [wrapper] ==== pilot stdout END ====
[2025-12-02 04:41:45] 2025-12-02 03:41:44,980 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 04:41:45] 2025-12-02 03:41:44,982 [wrapper] pilotpid: 18790
[2025-12-02 04:41:45] 2025-12-02 03:41:44,983 [wrapper] Pilot exit status: 0
[2025-12-02 04:41:45] 2025-12-02 03:41:44,988 [wrapper] pandaids: 6905333474
[2025-12-02 04:41:45] 2025-12-02 03:41:45,020 [wrapper] cleanup supervisor_pilot 15667 18791
[2025-12-02 04:41:45] 2025-12-02 03:41:45,021 [wrapper] Test setup, not cleaning
[2025-12-02 04:41:45] 2025-12-02 03:41:45,023 [wrapper] apfmon messages muted
[2025-12-02 04:41:45] 2025-12-02 03:41:45,024 [wrapper] ==== wrapper stdout END ====
[2025-12-02 04:41:45] 2025-12-02 03:41:45,025 [wrapper] ==== wrapper stderr END ====
[2025-12-02 04:41:45]  *** Error codes and diagnostics ***
[2025-12-02 04:41:45]     "exeErrorCode": 0,
[2025-12-02 04:41:45]     "exeErrorDiag": "",
[2025-12-02 04:41:45]     "pilotErrorCode": 0,
[2025-12-02 04:41:45]     "pilotErrorDiag": "",
[2025-12-02 04:41:45]  *** Listing of results directory ***
[2025-12-02 04:41:45] total 1080860
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user    576529 Nov 30 01:16 pilot3.tar.gz
[2025-12-02 04:41:45] -rwx------ 1 mf493845 unix-user     36292 Nov 30 01:18 runpilot2-wrapper.sh
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user      5112 Nov 30 01:21 queuedata.json
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user       100 Dec  1 22:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 04:41:45] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  1 22:24 run_atlas
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user       105 Dec  1 22:24 job.xml
[2025-12-02 04:41:45] -rw-r--r-- 2 mf493845 unix-user    590131 Dec  2 00:01 input.tar.gz
[2025-12-02 04:41:45] -rw-r--r-- 2 mf493845 unix-user 377996068 Dec  2 00:01 EVNT.47530720._000086.pool.root.1
[2025-12-02 04:41:45] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 00:01 start_atlas.sh
[2025-12-02 04:41:45] drwxrwx--x 2 mf493845 unix-user       100 Dec  2 00:01 shared
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user      6390 Dec  2 00:01 init_data.xml
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user         0 Dec  2 00:01 boinc_setup_complete
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user      8192 Dec  2 00:01 boinc_mmap_file
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user         0 Dec  2 00:01 boinc_lockfile
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user      2877 Dec  2 00:01 pandaJob.out
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user    992004 Dec  2 00:01 agis_schedconf.cvmfs.json
[2025-12-02 04:41:45] drwx------ 5 mf493845 unix-user       440 Dec  2 00:01 pilot3
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user 716786440 Dec  2 04:40 HITS.47530725._002238.pool.root.1
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user        95 Dec  2 04:40 pilot_heartbeat.json
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user      1031 Dec  2 04:40 memory_monitor_summary.json
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user   1516240 Dec  2 04:40 agis_ddmendpoints.agis.ALL.json
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user   1682834 Dec  2 04:40 log.47530725._002238.job.log.tgz.1
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user     28081 Dec  2 04:40 heartbeat.json
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user      4760 Dec  2 04:41 pilotlog.txt
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user   2362874 Dec  2 04:41 log.47530725._002238.job.log.1
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user       353 Dec  2 04:41 output.list
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user       620 Dec  2 04:41 runtime_log
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user   4085760 Dec  2 04:41 result.tar.gz
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user      9221 Dec  2 04:41 runtime_log.err
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user       650 Dec  2 04:41 NpPNDm9Jkj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZKPKDmrVFG1n.diag
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user     21830 Dec  2 04:41 stderr.txt
[2025-12-02 04:41:45] HITS file was successfully produced:
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user 716786440 Dec  2 04:40 shared/HITS.pool.root.1
[2025-12-02 04:41:45]  *** Contents of shared directory: ***
[2025-12-02 04:41:45] total 1073716
[2025-12-02 04:41:45] -rw-r--r-- 2 mf493845 unix-user    590131 Dec  2 00:01 input.tar.gz
[2025-12-02 04:41:45] -rw-r--r-- 2 mf493845 unix-user 377996068 Dec  2 00:01 ATLAS.root_0
[2025-12-02 04:41:45] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  2 00:01 start_atlas.sh
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user 716786440 Dec  2 04:40 HITS.pool.root.1
[2025-12-02 04:41:45] -rw------- 1 mf493845 unix-user   4085760 Dec  2 04:41 result.tar.gz
04:41:46 (14003): run_atlas exited; CPU time 129176.693621
04:41:46 (14003): called boinc_finish(0)

</stderr_txt>
]]>

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