Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
23:24:37 (20137): wrapper (7.7.26015): starting
23:24:37 (20137): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 23:24:37] Arguments: --nthreads 8
[2025-12-01 23:24:37] Threads: 8
[2025-12-01 23:24:37] Checking for CVMFS
[2025-12-01 23:24:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 23:24:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 23:24:38] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 23:24:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 23:24:38] 2.11.0.0 4487 73084 106584 153534 3 88 2952861 4096000 3745 130560 0 7302389 99.616 6585758 622 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-01 23:24:38] CVMFS is ok
[2025-12-01 23:24:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 23:24:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 23:24:38] Further information can be found at the LHC@home message board.
[2025-12-01 23:24:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 23:24:38] Checking for apptainer binary...
[2025-12-01 23:24:38] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-01 23:24:38] apptainer is not installed, using version from CVMFS
[2025-12-01 23:24:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 23:24:38] WARNING: Environment variable TMPDIR already has value [/tmp/job_10941755/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node045
[2025-12-01 23:24:38] apptainer works
[2025-12-01 23:24:38] Set ATHENA_PROC_NUMBER=8
[2025-12-01 23:24:38] Set ATHENA_CORE_NUMBER=8
[2025-12-01 23:24:38] Starting ATLAS job with PandaID=6899499769
[2025-12-01 23:24:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10941755/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 03:49:16]  *** The last 200 lines of the pilot log: ***
[2025-12-02 03:49:16] 2025-12-02 02:48:08,507 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-02 03:49:16] 2025-12-02 02:48:09,251 | INFO     | time since job start (15806s) is within the limit (172800.0s)
[2025-12-02 03:49:16] 2025-12-02 02:48:10,276 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 03:49:16] 2025-12-02 02:48:10,293 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2614.5513281249996
[2025-12-02 03:49:16] 2025-12-02 02:48:10,299 | INFO     | using path: /tmp/job_10941755/atlas/pilot/slots/0/PanDA_Pilot-6899499769/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 03:49:16] 2025-12-02 02:48:10,299 | INFO     | extracted standard info from prmon json
[2025-12-02 03:49:16] 2025-12-02 02:48:10,299 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 03:49:16] 2025-12-02 02:48:10,299 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 03:49:16] 2025-12-02 02:48:10,301 | INFO     | fitting pss+swap vs Time
[2025-12-02 03:49:16] 2025-12-02 02:48:10,302 | INFO     | sum of square deviations: 5387301010.0
[2025-12-02 03:49:16] 2025-12-02 02:48:10,302 | INFO     | sum of deviations: 119597576671.00008
[2025-12-02 03:49:16] 2025-12-02 02:48:10,302 | INFO     | mean x: 1764635770.0
[2025-12-02 03:49:16] 2025-12-02 02:48:10,303 | INFO     | mean y: 2891551.4015444014
[2025-12-02 03:49:16] 2025-12-02 02:48:10,303 | INFO     | intersect: -39171856881.48104
[2025-12-02 03:49:16] 2025-12-02 02:48:10,303 | INFO     | chi2: 2.7128010412395525
[2025-12-02 03:49:16] 2025-12-02 02:48:10,303 | INFO     | sum of square deviations: 5081276667.5
[2025-12-02 03:49:16] 2025-12-02 02:48:10,304 | INFO     | sum of deviations: 154737335674.00003
[2025-12-02 03:49:16] 2025-12-02 02:48:10,304 | INFO     | mean x: 1764635617.5
[2025-12-02 03:49:16] 2025-12-02 02:48:10,304 | INFO     | mean y: 2908850.8661417323
[2025-12-02 03:49:16] 2025-12-02 02:48:10,304 | INFO     | intersect: -53734573233.87488
[2025-12-02 03:49:16] 2025-12-02 02:48:10,304 | INFO     | chi2: 1.39320894119067
[2025-12-02 03:49:16] 2025-12-02 02:48:10,304 | INFO     | current chi2=1.39320894119067 (change=48.64315812286495 %)
[2025-12-02 03:49:16] 2025-12-02 02:48:10,304 | INFO     | sum of square deviations: 4787066500.0
[2025-12-02 03:49:16] 2025-12-02 02:48:10,305 | INFO     | sum of deviations: 149031150820.0
[2025-12-02 03:49:16] 2025-12-02 02:48:10,305 | INFO     | mean x: 1764635465.0
[2025-12-02 03:49:16] 2025-12-02 02:48:10,305 | INFO     | mean y: 2905892.6626506024
[2025-12-02 03:49:16] 2025-12-02 02:48:10,305 | INFO     | intersect: -54933797854.13841
[2025-12-02 03:49:16] 2025-12-02 02:48:10,305 | INFO     | chi2: 1.3915695756435436
[2025-12-02 03:49:16] 2025-12-02 02:48:10,306 | INFO     | current chi2=1.3915695756435436 (change=0.11766831942131187 %)
[2025-12-02 03:49:16] 2025-12-02 02:48:10,306 | INFO     | right removable region: 248
[2025-12-02 03:49:16] 2025-12-02 02:48:10,306 | INFO     | sum of square deviations: 5081276667.5
[2025-12-02 03:49:16] 2025-12-02 02:48:10,307 | INFO     | sum of deviations: 73348896760.49995
[2025-12-02 03:49:16] 2025-12-02 02:48:10,307 | INFO     | mean x: 1764635922.5
[2025-12-02 03:49:16] 2025-12-02 02:48:10,307 | INFO     | mean y: 2914406.12992126
[2025-12-02 03:49:16] 2025-12-02 02:48:10,307 | INFO     | intersect: -25469837142.15449
[2025-12-02 03:49:16] 2025-12-02 02:48:10,307 | INFO     | chi2: 1.373779149738291
[2025-12-02 03:49:16] 2025-12-02 02:48:10,307 | INFO     | current chi2=1.373779149738291 (change=49.35938430963688 %)
[2025-12-02 03:49:16] 2025-12-02 02:48:10,307 | INFO     | sum of square deviations: 4787066500.0
[2025-12-02 03:49:16] 2025-12-02 02:48:10,308 | INFO     | sum of deviations: 62537233550.000015
[2025-12-02 03:49:16] 2025-12-02 02:48:10,308 | INFO     | mean x: 1764636075.0
[2025-12-02 03:49:16] 2025-12-02 02:48:10,308 | INFO     | mean y: 2920007.4658634537
[2025-12-02 03:49:16] 2025-12-02 02:48:10,308 | INFO     | intersect: -23049915868.749844
[2025-12-02 03:49:16] 2025-12-02 02:48:10,308 | INFO     | chi2: 1.3605035258241773
[2025-12-02 03:49:16] 2025-12-02 02:48:10,308 | INFO     | current chi2=1.3605035258241773 (change=0.9663579416416881 %)
[2025-12-02 03:49:16] 2025-12-02 02:48:10,308 | INFO     | left removable region: 20
[2025-12-02 03:49:16] 2025-12-02 02:48:10,309 | INFO     | sum of square deviations: 3675146117.0
[2025-12-02 03:49:16] 2025-12-02 02:48:10,309 | INFO     | sum of deviations: 74897840511.0
[2025-12-02 03:49:16] 2025-12-02 02:48:10,309 | INFO     | mean x: 1764636044.5
[2025-12-02 03:49:16] 2025-12-02 02:48:10,309 | INFO     | mean y: 2946054.2807017546
[2025-12-02 03:49:16] 2025-12-02 02:48:10,310 | INFO     | intersect: -35959550350.84465
[2025-12-02 03:49:16] 2025-12-02 02:48:10,310 | INFO     | chi2: 0.011118856875517856
[2025-12-02 03:49:16] 2025-12-02 02:48:10,310 | INFO     | current memory leak: 20.38 B/s (using 228 data points, chi2=0.01)
[2025-12-02 03:49:16] 2025-12-02 02:48:10,310 | INFO     | could have reported an average CPU frequency of 3054 MHz (12 samples)
[2025-12-02 03:49:16] 2025-12-02 02:48:10,310 | INFO     | ..............................
[2025-12-02 03:49:16] 2025-12-02 02:48:10,310 | INFO     | . Timing measurements:
[2025-12-02 03:49:16] 2025-12-02 02:48:10,310 | INFO     | . get job = 0 s
[2025-12-02 03:49:16] 2025-12-02 02:48:10,310 | INFO     | . initial setup = 1 s
[2025-12-02 03:49:16] 2025-12-02 02:48:10,310 | INFO     | . payload setup = 2 s
[2025-12-02 03:49:16] 2025-12-02 02:48:10,310 | INFO     | . stage-in = 0 s
[2025-12-02 03:49:16] 2025-12-02 02:48:10,310 | INFO     | . payload execution = 15782 s
[2025-12-02 03:49:16] 2025-12-02 02:48:10,310 | INFO     | . stage-out = 1 s
[2025-12-02 03:49:16] 2025-12-02 02:48:10,310 | INFO     | . log creation = 0 s
[2025-12-02 03:49:16] 2025-12-02 02:48:10,310 | INFO     | ..............................
[2025-12-02 03:49:16] 2025-12-02 02:48:10,485 | INFO     | 
[2025-12-02 03:49:16] 2025-12-02 02:48:10,486 | INFO     | job summary report
[2025-12-02 03:49:16] 2025-12-02 02:48:10,486 | INFO     | --------------------------------------------------
[2025-12-02 03:49:16] 2025-12-02 02:48:10,486 | INFO     | PanDA job id: 6899499769
[2025-12-02 03:49:16] 2025-12-02 02:48:10,486 | INFO     | task id: 47556173
[2025-12-02 03:49:16] 2025-12-02 02:48:10,486 | INFO     | errors: (none)
[2025-12-02 03:49:16] 2025-12-02 02:48:10,486 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 03:49:16] 2025-12-02 02:48:10,486 | INFO     | pilot state: finished 
[2025-12-02 03:49:16] 2025-12-02 02:48:10,486 | INFO     | transexitcode: 0
[2025-12-02 03:49:16] 2025-12-02 02:48:10,486 | INFO     | exeerrorcode: 0
[2025-12-02 03:49:16] 2025-12-02 02:48:10,486 | INFO     | exeerrordiag: 
[2025-12-02 03:49:16] 2025-12-02 02:48:10,486 | INFO     | exitcode: 0
[2025-12-02 03:49:16] 2025-12-02 02:48:10,486 | INFO     | exitmsg: OK
[2025-12-02 03:49:16] 2025-12-02 02:48:10,486 | INFO     | cpuconsumptiontime: 119858 s
[2025-12-02 03:49:16] 2025-12-02 02:48:10,486 | INFO     | nevents: 1000
[2025-12-02 03:49:16] 2025-12-02 02:48:10,486 | INFO     | neventsw: 0
[2025-12-02 03:49:16] 2025-12-02 02:48:10,486 | INFO     | pid: 4819
[2025-12-02 03:49:16] 2025-12-02 02:48:10,486 | INFO     | pgrp: 4819
[2025-12-02 03:49:16] 2025-12-02 02:48:10,486 | INFO     | corecount: 8
[2025-12-02 03:49:16] 2025-12-02 02:48:10,486 | INFO     | event service: False
[2025-12-02 03:49:16] 2025-12-02 02:48:10,486 | INFO     | sizes: {0: 2284436, 2: 2284698, 11: 2284726, 15788: 2316943, 15790: 2326051, 15793: 2326241}
[2025-12-02 03:49:16] 2025-12-02 02:48:10,486 | INFO     | --------------------------------------------------
[2025-12-02 03:49:16] 2025-12-02 02:48:10,486 | INFO     | 
[2025-12-02 03:49:16] 2025-12-02 02:48:10,486 | INFO     | executing command: ls -lF /tmp/job_10941755/atlas/pilot/slots/0
[2025-12-02 03:49:16] 2025-12-02 02:48:10,495 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 03:49:16] 2025-12-02 02:48:10,495 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 03:49:16] 2025-12-02 02:48:10,495 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 03:49:16] 2025-12-02 02:48:10,495 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 03:49:16] 2025-12-02 02:48:10,495 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 03:49:16] 2025-12-02 02:48:10,495 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 03:49:16] 2025-12-02 02:48:10,495 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 03:49:16] 2025-12-02 02:48:10,495 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 03:49:16] 2025-12-02 02:48:10,496 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 03:49:16] 2025-12-02 02:48:10,496 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 03:49:16] 2025-12-02 02:48:10,496 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 03:49:16] 2025-12-02 02:48:10,496 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 03:49:16] 2025-12-02 02:48:10,496 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 03:49:16] 2025-12-02 02:48:10,496 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 03:49:16] 2025-12-02 02:48:10,496 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 03:49:16] 2025-12-02 02:48:10,496 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 03:49:16] 2025-12-02 02:48:10,496 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 03:49:16] 2025-12-02 02:48:10,496 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 03:49:16] 2025-12-02 02:48:10,496 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 03:49:16] 2025-12-02 02:48:10,496 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 03:49:16] 2025-12-02 02:48:10,496 | INFO     | job 6899499769 has completed (purged errors)
[2025-12-02 03:49:16] 2025-12-02 02:48:10,496 | INFO     | overall cleanup function is called
[2025-12-02 03:49:16] 2025-12-02 02:48:11,503 | INFO     | --- collectZombieJob: --- 10, [4819]
[2025-12-02 03:49:16] 2025-12-02 02:48:11,503 | INFO     | zombie collector waiting for pid 4819
[2025-12-02 03:49:16] 2025-12-02 02:48:11,503 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 03:49:16] 2025-12-02 02:48:11,504 | INFO     | collected zombie processes
[2025-12-02 03:49:16] 2025-12-02 02:48:11,504 | INFO     | will attempt to kill all subprocesses of pid=4819
[2025-12-02 03:49:16] 2025-12-02 02:48:11,608 | INFO     | process IDs to be killed: [4819] (in reverse order)
[2025-12-02 03:49:16] 2025-12-02 02:48:11,646 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 03:49:16] 2025-12-02 02:48:11,646 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 03:49:16] 2025-12-02 02:48:11,651 | INFO     | did not find any defunct processes belonging to 4819
[2025-12-02 03:49:16] 2025-12-02 02:48:11,654 | INFO     | did not find any defunct processes belonging to 4819
[2025-12-02 03:49:16] 2025-12-02 02:48:11,655 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 03:49:16] 2025-12-02 02:48:11,655 | INFO     | ready for new job
[2025-12-02 03:49:16] 2025-12-02 02:48:11,655 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 03:49:16] 2025-12-02 02:48:11,656 | INFO     | ***************************************
[2025-12-02 03:49:16] 2025-12-02 02:48:11,656 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 03:49:16] 2025-12-02 02:48:11,656 | INFO     | ***************************************
[2025-12-02 03:49:16] 2025-12-02 02:48:11,656 | INFO     | 
[2025-12-02 03:49:16] 2025-12-02 02:48:11,670 | INFO     | architecture information:
[2025-12-02 03:49:16] 2025-12-02 02:48:11,670 | INFO     | executing command: cat /etc/os-release
[2025-12-02 03:49:16] 2025-12-02 02:48:11,676 | INFO     | cat /etc/os-release:
[2025-12-02 03:49:16] NAME="CentOS Linux"
[2025-12-02 03:49:16] VERSION="7 (Core)"
[2025-12-02 03:49:16] ID="centos"
[2025-12-02 03:49:16] ID_LIKE="rhel fedora"
[2025-12-02 03:49:16] VERSION_ID="7"
[2025-12-02 03:49:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 03:49:16] ANSI_COLOR="0;31"
[2025-12-02 03:49:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 03:49:16] HOME_URL="https://www.centos.org/"
[2025-12-02 03:49:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 03:49:16] 
[2025-12-02 03:49:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 03:49:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 03:49:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 03:49:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 03:49:16] 
[2025-12-02 03:49:16] 2025-12-02 02:48:11,676 | INFO     | ***************************************
[2025-12-02 03:49:16] 2025-12-02 02:48:12,179 | INFO     | executing command: df -mP /tmp/job_10941755/atlas/pilot/slots/0
[2025-12-02 03:49:16] 2025-12-02 02:48:12,184 | INFO     | sufficient remaining disk space (221704617984 B)
[2025-12-02 03:49:16] 2025-12-02 02:48:12,184 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 03:49:16] 2025-12-02 02:48:12,184 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 03:49:16] 2025-12-02 02:48:12,184 | INFO     | update_server=False
[2025-12-02 03:49:16] 2025-12-02 02:48:12,184 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 03:49:16] 2025-12-02 02:48:12,185 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 03:49:16] 2025-12-02 02:48:12,185 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 03:49:16] 2025-12-02 02:48:12,185 | INFO     | aborting loop
[2025-12-02 03:49:16] 2025-12-02 02:48:12,192 | INFO     | all job control threads have been joined
[2025-12-02 03:49:16] 2025-12-02 02:48:12,217 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 03:49:16] 2025-12-02 02:48:12,369 | INFO     | all payload control threads have been joined
[2025-12-02 03:49:16] 2025-12-02 02:48:12,764 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 03:49:16] 2025-12-02 02:48:12,991 | INFO     | all data control threads have been joined
[2025-12-02 03:49:16] 2025-12-02 02:48:13,190 | INFO     | [job] retrieve thread has finished
[2025-12-02 03:49:16] 2025-12-02 02:48:13,190 | INFO     | [job] queue monitor thread has finished
[2025-12-02 03:49:16] 2025-12-02 02:48:13,190 | INFO     | [job] job monitor thread has finished
[2025-12-02 03:49:16] 2025-12-02 02:48:13,196 | INFO     | [job] control thread has finished
[2025-12-02 03:49:16] 2025-12-02 02:48:13,374 | INFO     | [payload] control thread has finished
[2025-12-02 03:49:16] 2025-12-02 02:48:13,399 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 03:49:16] 2025-12-02 02:48:13,542 | INFO     | [payload] failed_post thread has finished
[2025-12-02 03:49:16] 2025-12-02 02:48:13,607 | INFO     | [data] copytool_in thread has finished
[2025-12-02 03:49:16] 2025-12-02 02:48:13,948 | INFO     | [payload] validate_post thread has finished
[2025-12-02 03:49:16] 2025-12-02 02:48:13,996 | INFO     | [data] control thread has finished
[2025-12-02 03:49:16] 2025-12-02 02:48:14,173 | INFO     | [job] validate thread has finished
[2025-12-02 03:49:16] 2025-12-02 02:48:14,220 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 03:49:16] 2025-12-02 02:48:14,223 | INFO     | [data] copytool_out thread has finished
[2025-12-02 03:49:16] 2025-12-02 02:48:14,607 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 03:49:16] 2025-12-02 02:48:16,769 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 03:49:16] 2025-12-02 02:48:22,512 | INFO     | job.realtimelogging is not enabled
[2025-12-02 03:49:16] 2025-12-02 02:48:23,517 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 03:49:16] 2025-12-02 02:48:42,442 | INFO     | PID=30217 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 03:49:16] 2025-12-02 02:48:42,442 | INFO     | .. there are 4 such processes running
[2025-12-02 03:49:16] 2025-12-02 02:48:42,443 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 03:49:16] 2025-12-02 02:48:42,443 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 03:49:16] 2025-12-02 02:48:42,443 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 03:49:16] 2025-12-02 02:49:09,447 | INFO     | [monitor] cgroup control has ended
[2025-12-02 03:49:16] 2025-12-02 02:49:11,278 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2025-12-02 03:49:16] 2025-12-02 02:49:11,588 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 03:49:16] 2025-12-02 02:49:11,588 | INFO     | [monitor] control thread has ended
[2025-12-02 03:49:16] 2025-12-02 02:49:16,303 | INFO     | all workflow threads have been joined
[2025-12-02 03:49:16] 2025-12-02 02:49:16,303 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 03:49:16] 2025-12-02 02:49:16,303 | INFO     | traces error code: 0
[2025-12-02 03:49:16] 2025-12-02 02:49:16,304 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 03:49:16] 2025-12-02 02:49:16,355 [wrapper] ==== pilot stdout END ====
[2025-12-02 03:49:16] 2025-12-02 02:49:16,357 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 03:49:16] 2025-12-02 02:49:16,358 [wrapper] pilotpid: 30217
[2025-12-02 03:49:16] 2025-12-02 02:49:16,359 [wrapper] Pilot exit status: 0
[2025-12-02 03:49:16] 2025-12-02 02:49:16,363 [wrapper] pandaids: 6899499769
[2025-12-02 03:49:16] 2025-12-02 02:49:16,388 [wrapper] cleanup supervisor_pilot 20697 30218
[2025-12-02 03:49:16] 2025-12-02 02:49:16,389 [wrapper] Test setup, not cleaning
[2025-12-02 03:49:16] 2025-12-02 02:49:16,390 [wrapper] apfmon messages muted
[2025-12-02 03:49:16] 2025-12-02 02:49:16,391 [wrapper] ==== wrapper stdout END ====
[2025-12-02 03:49:16] 2025-12-02 02:49:16,392 [wrapper] ==== wrapper stderr END ====
[2025-12-02 03:49:16]  *** Error codes and diagnostics ***
[2025-12-02 03:49:16]     "exeErrorCode": 0,
[2025-12-02 03:49:16]     "exeErrorDiag": "",
[2025-12-02 03:49:16]     "pilotErrorCode": 0,
[2025-12-02 03:49:16]     "pilotErrorDiag": "",
[2025-12-02 03:49:16]  *** Listing of results directory ***
[2025-12-02 03:49:16] total 1305948
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user    576529 Nov 27 09:46 pilot3.tar.gz
[2025-12-02 03:49:16] -rwx------ 1 mf493845 unix-user     36292 Nov 27 09:47 runpilot2-wrapper.sh
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user      5112 Nov 27 09:48 queuedata.json
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user       100 Dec  1 21:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 03:49:16] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  1 21:40 run_atlas
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user       105 Dec  1 21:40 job.xml
[2025-12-02 03:49:16] -rw-r--r-- 2 mf493845 unix-user 410205423 Dec  1 23:24 EVNT.47483658._003358.pool.root.1
[2025-12-02 03:49:16] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  1 23:24 start_atlas.sh
[2025-12-02 03:49:16] drwxrwx--x 2 mf493845 unix-user       100 Dec  1 23:24 shared
[2025-12-02 03:49:16] -rw-r--r-- 2 mf493845 unix-user    590107 Dec  1 23:24 input.tar.gz
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user      6391 Dec  1 23:24 init_data.xml
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user         0 Dec  1 23:24 boinc_setup_complete
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user      8192 Dec  1 23:24 boinc_mmap_file
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user         0 Dec  1 23:24 boinc_lockfile
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user      2784 Dec  1 23:24 pandaJob.out
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user    992004 Dec  1 23:24 agis_schedconf.cvmfs.json
[2025-12-02 03:49:16] drwx------ 5 mf493845 unix-user       440 Dec  1 23:24 pilot3
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user 915532693 Dec  2 03:47 HITS.47556173._003141.pool.root.1
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user      1029 Dec  2 03:48 memory_monitor_summary.json
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user   1516240 Dec  2 03:48 agis_ddmendpoints.agis.ALL.json
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user   1549896 Dec  2 03:48 log.47556173._003141.job.log.tgz.1
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user      8581 Dec  2 03:48 heartbeat.json
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user        95 Dec  2 03:48 pilot_heartbeat.json
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user      4907 Dec  2 03:49 pilotlog.txt
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user   2285413 Dec  2 03:49 log.47556173._003141.job.log.1
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user       353 Dec  2 03:49 output.list
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user       620 Dec  2 03:49 runtime_log
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user   3850240 Dec  2 03:49 result.tar.gz
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user       650 Dec  2 03:49 StBLDmtpmi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmvbKKDmWx301m.diag
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user      9221 Dec  2 03:49 runtime_log.err
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user     21748 Dec  2 03:49 stderr.txt
[2025-12-02 03:49:16] HITS file was successfully produced:
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user 915532693 Dec  2 03:47 shared/HITS.pool.root.1
[2025-12-02 03:49:16]  *** Contents of shared directory: ***
[2025-12-02 03:49:16] total 1299024
[2025-12-02 03:49:16] -rw-r--r-- 2 mf493845 unix-user 410205423 Dec  1 23:24 ATLAS.root_0
[2025-12-02 03:49:16] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  1 23:24 start_atlas.sh
[2025-12-02 03:49:16] -rw-r--r-- 2 mf493845 unix-user    590107 Dec  1 23:24 input.tar.gz
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user 915532693 Dec  2 03:47 HITS.pool.root.1
[2025-12-02 03:49:16] -rw------- 1 mf493845 unix-user   3850240 Dec  2 03:49 result.tar.gz
03:49:17 (20137): run_atlas exited; CPU time 120050.942745
03:49:17 (20137): called boinc_finish(0)

</stderr_txt>
]]>

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