Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
08:46:08 (2186137): wrapper (7.7.26015): starting
08:46:08 (2186137): wrapper: running run_atlas (--nthreads 10)
[2025-12-05 08:46:08] Arguments: --nthreads 10
[2025-12-05 08:46:08] Threads: 10
[2025-12-05 08:46:08] Checking for CVMFS
[2025-12-05 08:46:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-05 08:46:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-05 08:46:08] Running cvmfs_config stat atlas.cern.ch
[2025-12-05 08:46:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-05 08:46:09] 2.13.3.0 8606 5706 52500 153657 3 110 3695993 4096001 9872 130560 0 18607668 99.988 398482 803 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-05 08:46:09] CVMFS is ok
[2025-12-05 08:46:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-05 08:46:09] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-05 08:46:09] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-05 08:46:09] Further information can be found at the LHC@home message board.
[2025-12-05 08:46:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-05 08:46:09] Checking for apptainer binary...
[2025-12-05 08:46:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-05 08:46:09] Running /usr/bin/apptainer --version
[2025-12-05 08:46:09] apptainer version 1.4.2
[2025-12-05 08:46:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-05 08:46:09] 3950x-linux
[2025-12-05 08:46:09] apptainer works
[2025-12-05 08:46:09] Set ATHENA_PROC_NUMBER=10
[2025-12-05 08:46:09] Set ATHENA_CORE_NUMBER=10
[2025-12-05 08:46:09] Starting ATLAS job with PandaID=6895331366
[2025-12-05 08:46:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc237/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-06 06:46:04]  *** The last 200 lines of the pilot log: ***
[2025-12-06 06:46:04] 2025-12-06 14:45:05,037 | INFO     | time since job start (79099s) is within the limit (172800.0s)
[2025-12-06 06:46:04] 2025-12-06 14:45:05,474 | INFO     | monitor loop #5129: job 0:6895331366 is in state 'finished'
[2025-12-06 06:46:04] 2025-12-06 14:45:05,474 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-06 06:46:04] 2025-12-06 14:45:07,045 | INFO     | time since job start (79101s) is within the limit (172800.0s)
[2025-12-06 06:46:04] 2025-12-06 14:45:07,978 | INFO     | monitor loop #5130: job 0:6895331366 is in state 'finished'
[2025-12-06 06:46:04] 2025-12-06 14:45:07,978 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-06 06:46:04] 2025-12-06 14:45:09,053 | INFO     | time since job start (79103s) is within the limit (172800.0s)
[2025-12-06 06:46:04] 2025-12-06 14:45:10,483 | INFO     | monitor loop #5131: job 0:6895331366 is in state 'finished'
[2025-12-06 06:46:04] 2025-12-06 14:45:10,483 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-06 06:46:04] 2025-12-06 14:45:11,058 | INFO     | time since job start (79105s) is within the limit (172800.0s)
[2025-12-06 06:46:04] 2025-12-06 14:45:11,579 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-06 06:46:04] 2025-12-06 14:45:11,586 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3400.1267499999994
[2025-12-06 06:46:04] 2025-12-06 14:45:11,597 | INFO     | using path: /var/lib/multiboinc/boinc237/slots/1/PanDA_Pilot-6895331366/memory_monitor_summary.json (trf name=prmon)
[2025-12-06 06:46:04] 2025-12-06 14:45:11,597 | INFO     | extracted standard info from prmon json
[2025-12-06 06:46:04] 2025-12-06 14:45:11,597 | INFO     | extracted standard memory fields from prmon json
[2025-12-06 06:46:04] 2025-12-06 14:45:11,598 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-06 06:46:04] 2025-12-06 14:45:11,632 | INFO     | fitting pss+swap vs Time
[2025-12-06 06:46:04] 2025-12-06 14:45:11,634 | INFO     | sum of square deviations: 673421966345.9346
[2025-12-06 06:46:04] 2025-12-06 14:45:11,702 | INFO     | sum of deviations: 3306047991802.955
[2025-12-06 06:46:04] 2025-12-06 14:45:11,702 | INFO     | mean x: 1764992753.7513514
[2025-12-06 06:46:04] 2025-12-06 14:45:11,702 | INFO     | mean y: 3143370.4594594594
[2025-12-06 06:46:04] 2025-12-06 14:45:11,702 | INFO     | intersect: -8661781506.803791
[2025-12-06 06:46:04] 2025-12-06 14:45:11,703 | INFO     | chi2: 13.297874799425907
[2025-12-06 06:46:04] 2025-12-06 14:45:11,708 | INFO     | sum of square deviations: 665653265067.7985
[2025-12-06 06:46:04] 2025-12-06 14:45:11,745 | INFO     | sum of deviations: 3784870061702.5977
[2025-12-06 06:46:04] 2025-12-06 14:45:11,745 | INFO     | mean x: 1764992601.2658916
[2025-12-06 06:46:04] 2025-12-06 14:45:11,745 | INFO     | mean y: 3152767.3976744185
[2025-12-06 06:46:04] 2025-12-06 14:45:11,745 | INFO     | intersect: -10032503941.921495
[2025-12-06 06:46:04] 2025-12-06 14:45:11,746 | INFO     | chi2: 10.049015888208237
[2025-12-06 06:46:04] 2025-12-06 14:45:11,746 | INFO     | current chi2=10.049015888208237 (change=24.431414494577204 %)
[2025-12-06 06:46:04] 2025-12-06 14:45:11,746 | INFO     | right removable region: 1289
[2025-12-06 06:46:04] 2025-12-06 14:45:11,747 | INFO     | sum of square deviations: 665650301687.7985
[2025-12-06 06:46:04] 2025-12-06 14:45:11,778 | INFO     | sum of deviations: 2783874394854.4014
[2025-12-06 06:46:04] 2025-12-06 14:45:11,779 | INFO     | mean x: 1764992906.2658916
[2025-12-06 06:46:04] 2025-12-06 14:45:11,779 | INFO     | mean y: 3153615.26124031
[2025-12-06 06:46:04] 2025-12-06 14:45:11,779 | INFO     | intersect: -7378377717.924868
[2025-12-06 06:46:04] 2025-12-06 14:45:11,780 | INFO     | chi2: 9.82112688223548
[2025-12-06 06:46:04] 2025-12-06 14:45:11,780 | INFO     | current chi2=9.82112688223548 (change=26.14513950259574 %)
[2025-12-06 06:46:04] 2025-12-06 14:45:11,781 | INFO     | sum of square deviations: 657939266238.5521
[2025-12-06 06:46:04] 2025-12-06 14:45:11,812 | INFO     | sum of deviations: 2507112303264.3784
[2025-12-06 06:46:04] 2025-12-06 14:45:11,812 | INFO     | mean x: 1764993058.7743192
[2025-12-06 06:46:04] 2025-12-06 14:45:11,812 | INFO     | mean y: 3159084.459922179
[2025-12-06 06:46:04] 2025-12-06 14:45:11,812 | INFO     | intersect: -6722440130.992463
[2025-12-06 06:46:04] 2025-12-06 14:45:11,813 | INFO     | chi2: 8.805084953157316
[2025-12-06 06:46:04] 2025-12-06 14:45:11,813 | INFO     | current chi2=8.805084953157316 (change=10.34547197344521 %)
[2025-12-06 06:46:04] 2025-12-06 14:45:11,813 | INFO     | left removable region: 20
[2025-12-06 06:46:04] 2025-12-06 14:45:11,815 | INFO     | sum of square deviations: 633668807817.9067
[2025-12-06 06:46:04] 2025-12-06 14:45:11,844 | INFO     | sum of deviations: 2858946296075.482
[2025-12-06 06:46:04] 2025-12-06 14:45:11,845 | INFO     | mean x: 1764993180.7935383
[2025-12-06 06:46:04] 2025-12-06 14:45:11,845 | INFO     | mean y: 3174818.8644602047
[2025-12-06 06:46:04] 2025-12-06 14:45:11,845 | INFO     | intersect: -7960008242.338407
[2025-12-06 06:46:04] 2025-12-06 14:45:11,846 | INFO     | chi2: 4.796327540769459
[2025-12-06 06:46:04] 2025-12-06 14:45:11,846 | INFO     | current memory leak: 4.51 B/s (using 1269 data points, chi2=4.80)
[2025-12-06 06:46:04] 2025-12-06 14:45:11,847 | INFO     | could have reported an average CPU frequency of 3400 MHz (47 samples)
[2025-12-06 06:46:04] 2025-12-06 14:45:11,847 | INFO     | ..............................
[2025-12-06 06:46:04] 2025-12-06 14:45:11,847 | INFO     | . Timing measurements:
[2025-12-06 06:46:04] 2025-12-06 14:45:11,847 | INFO     | . get job = 0 s
[2025-12-06 06:46:04] 2025-12-06 14:45:11,847 | INFO     | . initial setup = 5 s
[2025-12-06 06:46:04] 2025-12-06 14:45:11,847 | INFO     | . payload setup = 20 s
[2025-12-06 06:46:04] 2025-12-06 14:45:11,847 | INFO     | . stage-in = 0 s
[2025-12-06 06:46:04] 2025-12-06 14:45:11,847 | INFO     | . payload execution = 79007 s
[2025-12-06 06:46:04] 2025-12-06 14:45:11,847 | INFO     | . stage-out = 9 s
[2025-12-06 06:46:04] 2025-12-06 14:45:11,847 | INFO     | . log creation = 3 s
[2025-12-06 06:46:04] 2025-12-06 14:45:11,847 | INFO     | ..............................
[2025-12-06 06:46:04] 2025-12-06 14:45:12,481 | INFO     | 
[2025-12-06 06:46:04] 2025-12-06 14:45:12,482 | INFO     | job summary report
[2025-12-06 06:46:04] 2025-12-06 14:45:12,482 | INFO     | --------------------------------------------------
[2025-12-06 06:46:04] 2025-12-06 14:45:12,482 | INFO     | PanDA job id: 6895331366
[2025-12-06 06:46:04] 2025-12-06 14:45:12,482 | INFO     | task id: 47556137
[2025-12-06 06:46:04] 2025-12-06 14:45:12,482 | INFO     | errors: (none)
[2025-12-06 06:46:04] 2025-12-06 14:45:12,482 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-06 06:46:04] 2025-12-06 14:45:12,482 | INFO     | pilot state: finished 
[2025-12-06 06:46:04] 2025-12-06 14:45:12,482 | INFO     | transexitcode: 0
[2025-12-06 06:46:04] 2025-12-06 14:45:12,482 | INFO     | exeerrorcode: 0
[2025-12-06 06:46:04] 2025-12-06 14:45:12,482 | INFO     | exeerrordiag: 
[2025-12-06 06:46:04] 2025-12-06 14:45:12,482 | INFO     | exitcode: 0
[2025-12-06 06:46:04] 2025-12-06 14:45:12,482 | INFO     | exitmsg: OK
[2025-12-06 06:46:04] 2025-12-06 14:45:12,483 | INFO     | cpuconsumptiontime: 208644 s
[2025-12-06 06:46:04] 2025-12-06 14:45:12,483 | INFO     | nevents: 1000
[2025-12-06 06:46:04] 2025-12-06 14:45:12,483 | INFO     | neventsw: 0
[2025-12-06 06:46:04] 2025-12-06 14:45:12,483 | INFO     | pid: 2196810
[2025-12-06 06:46:04] 2025-12-06 14:45:12,483 | INFO     | pgrp: 2196810
[2025-12-06 06:46:04] 2025-12-06 14:45:12,483 | INFO     | corecount: 10
[2025-12-06 06:46:04] 2025-12-06 14:45:12,483 | INFO     | event service: False
[2025-12-06 06:46:04] 2025-12-06 14:45:12,483 | INFO     | sizes: {0: 2284107, 1: 2284135, 2: 2284306, 13: 2284334, 17: 2284652, 23: 2284680, 79032: 2348610, 79043: 2357632, 79046: 2357688, 79065: 2357934}
[2025-12-06 06:46:04] 2025-12-06 14:45:12,483 | INFO     | --------------------------------------------------
[2025-12-06 06:46:04] 2025-12-06 14:45:12,483 | INFO     | 
[2025-12-06 06:46:04] 2025-12-06 14:45:12,483 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc237/slots/1
[2025-12-06 06:46:04] 2025-12-06 14:45:12,566 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-06 06:46:04] 2025-12-06 14:45:12,567 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-06 06:46:04] 2025-12-06 14:45:12,567 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-06 06:46:04] 2025-12-06 14:45:12,567 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-06 06:46:04] 2025-12-06 14:45:12,567 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-06 06:46:04] 2025-12-06 14:45:12,567 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-06 06:46:04] 2025-12-06 14:45:12,567 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-06 06:46:04] 2025-12-06 14:45:12,567 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-06 06:46:04] 2025-12-06 14:45:12,567 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-06 06:46:04] 2025-12-06 14:45:12,567 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-06 06:46:04] 2025-12-06 14:45:12,567 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-06 06:46:04] 2025-12-06 14:45:12,567 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-06 06:46:04] 2025-12-06 14:45:12,567 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-06 06:46:04] 2025-12-06 14:45:12,567 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-06 06:46:04] 2025-12-06 14:45:12,567 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-06 06:46:04] 2025-12-06 14:45:12,568 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-06 06:46:04] 2025-12-06 14:45:12,568 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-06 06:46:04] 2025-12-06 14:45:12,568 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-06 06:46:04] 2025-12-06 14:45:12,568 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-06 06:46:04] 2025-12-06 14:45:12,568 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-06 06:46:04] 2025-12-06 14:45:12,568 | INFO     | job 6895331366 has completed (purged errors)
[2025-12-06 06:46:04] 2025-12-06 14:45:12,568 | INFO     | overall cleanup function is called
[2025-12-06 06:46:04] 2025-12-06 14:45:13,635 | INFO     | --- collectZombieJob: --- 10, [2196810]
[2025-12-06 06:46:04] 2025-12-06 14:45:13,636 | INFO     | zombie collector waiting for pid 2196810
[2025-12-06 06:46:04] 2025-12-06 14:45:13,636 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-06 06:46:04] 2025-12-06 14:45:13,636 | INFO     | collected zombie processes
[2025-12-06 06:46:04] 2025-12-06 14:45:13,636 | INFO     | will attempt to kill all subprocesses of pid=2196810
[2025-12-06 06:46:04] 2025-12-06 14:45:14,827 | INFO     | process IDs to be killed: [2196810] (in reverse order)
[2025-12-06 06:46:04] 2025-12-06 14:45:15,149 | WARNING  | found no corresponding commands to process id(s)
[2025-12-06 06:46:04] 2025-12-06 14:45:15,150 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-06 06:46:04] 2025-12-06 14:45:15,176 | INFO     | did not find any defunct processes belonging to 2196810
[2025-12-06 06:46:04] 2025-12-06 14:45:15,197 | INFO     | did not find any defunct processes belonging to 2196810
[2025-12-06 06:46:04] 2025-12-06 14:45:15,205 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-06 06:46:04] 2025-12-06 14:45:15,206 | INFO     | ready for new job
[2025-12-06 06:46:04] 2025-12-06 14:45:15,206 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-06 06:46:04] 2025-12-06 14:45:15,217 | INFO     | ***************************************
[2025-12-06 06:46:04] 2025-12-06 14:45:15,224 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-06 06:46:04] 2025-12-06 14:45:15,224 | INFO     | ***************************************
[2025-12-06 06:46:04] 2025-12-06 14:45:15,224 | INFO     | 
[2025-12-06 06:46:04] 2025-12-06 14:45:15,225 | INFO     | architecture information:
[2025-12-06 06:46:04] 2025-12-06 14:45:15,233 | INFO     | executing command: cat /etc/os-release
[2025-12-06 06:46:04] 2025-12-06 14:45:15,296 | INFO     | cat /etc/os-release:
[2025-12-06 06:46:04] NAME="CentOS Linux"
[2025-12-06 06:46:04] VERSION="7 (Core)"
[2025-12-06 06:46:04] ID="centos"
[2025-12-06 06:46:04] ID_LIKE="rhel fedora"
[2025-12-06 06:46:04] VERSION_ID="7"
[2025-12-06 06:46:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-06 06:46:04] ANSI_COLOR="0;31"
[2025-12-06 06:46:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-06 06:46:04] HOME_URL="https://www.centos.org/"
[2025-12-06 06:46:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-06 06:46:04] 
[2025-12-06 06:46:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-06 06:46:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-06 06:46:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-06 06:46:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-06 06:46:04] 
[2025-12-06 06:46:04] 2025-12-06 14:45:15,297 | INFO     | ***************************************
[2025-12-06 06:46:04] 2025-12-06 14:45:15,809 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc237/slots/1
[2025-12-06 06:46:04] 2025-12-06 14:45:15,883 | INFO     | sufficient remaining disk space (57706283008 B)
[2025-12-06 06:46:04] 2025-12-06 14:45:15,884 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-06 06:46:04] 2025-12-06 14:45:15,884 | INFO     | current server update state: UPDATING_FINAL
[2025-12-06 06:46:04] 2025-12-06 14:45:15,884 | INFO     | update_server=False
[2025-12-06 06:46:04] 2025-12-06 14:45:15,884 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-06 06:46:04] 2025-12-06 14:45:15,887 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-06 06:46:04] 2025-12-06 14:45:15,955 | INFO     | all payload control threads have been joined
[2025-12-06 06:46:04] 2025-12-06 14:45:16,508 | INFO     | all data control threads have been joined
[2025-12-06 06:46:04] 2025-12-06 14:45:16,525 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-06 06:46:04] 2025-12-06 14:45:16,525 | INFO     | aborting loop
[2025-12-06 06:46:04] 2025-12-06 14:45:16,766 | INFO     | all job control threads have been joined
[2025-12-06 06:46:04] 2025-12-06 14:45:16,889 | INFO     | [job] retrieve thread has finished
[2025-12-06 06:46:04] 2025-12-06 14:45:16,960 | INFO     | [payload] control thread has finished
[2025-12-06 06:46:04] 2025-12-06 14:45:16,988 | INFO     | [payload] validate_post thread has finished
[2025-12-06 06:46:04] 2025-12-06 14:45:16,997 | INFO     | [job] create_data_payload thread has finished
[2025-12-06 06:46:04] 2025-12-06 14:45:17,060 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-06 06:46:04] 2025-12-06 14:45:17,142 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-06 06:46:04] 2025-12-06 14:45:17,321 | INFO     | [data] copytool_in thread has finished
[2025-12-06 06:46:04] 2025-12-06 14:45:17,360 | INFO     | [payload] execute_payloads thread has finished
[2025-12-06 06:46:04] 2025-12-06 14:45:17,514 | INFO     | [data] control thread has finished
[2025-12-06 06:46:04] 2025-12-06 14:45:17,522 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-06 06:46:04] 2025-12-06 14:45:17,530 | INFO     | [job] job monitor thread has finished
[2025-12-06 06:46:04] 2025-12-06 14:45:17,772 | INFO     | [job] control thread has finished
[2025-12-06 06:46:04] 2025-12-06 14:45:17,892 | INFO     | [data] copytool_out thread has finished
[2025-12-06 06:46:04] 2025-12-06 14:45:18,017 | INFO     | [payload] failed_post thread has finished
[2025-12-06 06:46:04] 2025-12-06 14:45:18,046 | INFO     | [payload] validate_pre thread has finished
[2025-12-06 06:46:04] 2025-12-06 14:45:18,059 | INFO     | [job] validate thread has finished
[2025-12-06 06:46:04] 2025-12-06 14:45:18,067 | INFO     | [job] queue monitor thread has finished
[2025-12-06 06:46:04] 2025-12-06 14:45:21,150 | INFO     | [data] queue_monitor thread has finished
[2025-12-06 06:46:04] 2025-12-06 14:45:44,986 | INFO     | PID=2190046 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-06 06:46:04] 2025-12-06 14:45:44,986 | INFO     | .. there are 12 such processes running
[2025-12-06 06:46:04] 2025-12-06 14:45:44,990 | INFO     | found 0 job(s) in 20 queues
[2025-12-06 06:46:04] 2025-12-06 14:45:44,990 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-06 06:46:04] 2025-12-06 14:45:44,991 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-06 06:46:04] 2025-12-06 14:45:58,489 | INFO     | [monitor] cgroup control has ended
[2025-12-06 06:46:04] 2025-12-06 14:45:58,608 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 133580361942848)>', '<ExcThread(monitor, started 133580017608448)>']
[2025-12-06 06:46:04] 2025-12-06 14:45:59,071 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-06 06:46:04] 2025-12-06 14:45:59,072 | INFO     | [monitor] control thread has ended
[2025-12-06 06:46:04] 2025-12-06 14:46:03,633 | INFO     | all workflow threads have been joined
[2025-12-06 06:46:04] 2025-12-06 14:46:03,633 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-06 06:46:04] 2025-12-06 14:46:03,633 | INFO     | traces error code: 0
[2025-12-06 06:46:04] 2025-12-06 14:46:03,633 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-06 06:46:04] 2025-12-06 14:46:04,134 [wrapper] ==== pilot stdout END ====
[2025-12-06 06:46:04] 2025-12-06 14:46:04,148 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-06 06:46:04] 2025-12-06 14:46:04,163 [wrapper] pilotpid: 2190046
[2025-12-06 06:46:04] 2025-12-06 14:46:04,195 [wrapper] Pilot exit status: 0
[2025-12-06 06:46:04] 2025-12-06 14:46:04,271 [wrapper] pandaids: 6895331366
[2025-12-06 06:46:04] 2025-12-06 14:46:04,440 [wrapper] cleanup supervisor_pilot 3677774 2190047
[2025-12-06 06:46:04] 2025-12-06 14:46:04,458 [wrapper] Test setup, not cleaning
[2025-12-06 06:46:04] 2025-12-06 14:46:04,469 [wrapper] apfmon messages muted
[2025-12-06 06:46:04] 2025-12-06 14:46:04,484 [wrapper] ==== wrapper stdout END ====
[2025-12-06 06:46:04] 2025-12-06 14:46:04,502 [wrapper] ==== wrapper stderr END ====
[2025-12-06 06:46:04]  *** Error codes and diagnostics ***
[2025-12-06 06:46:04]     "exeErrorCode": 0,
[2025-12-06 06:46:04]     "exeErrorDiag": "",
[2025-12-06 06:46:04]     "pilotErrorCode": 0,
[2025-12-06 06:46:04]     "pilotErrorDiag": "",
[2025-12-06 06:46:04]  *** Listing of results directory ***
[2025-12-06 06:46:05] total 1320156
[2025-12-06 06:46:05] -rw-r--r-- 1 root root    576529 Nov 21 15:30 pilot3.tar.gz
[2025-12-06 06:46:05] -rwx------ 1 4871 1028     36292 Nov 21 15:34 runpilot2-wrapper.sh
[2025-12-06 06:46:05] -rw-r--r-- 1 root root      5112 Nov 21 15:34 queuedata.json
[2025-12-06 06:46:05] -rw-r--r-- 1 root root       100 Dec  5 08:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-06 06:46:05] -rwxr-xr-x 1 root root      7986 Dec  5 08:46 run_atlas
[2025-12-06 06:46:05] -rw-r--r-- 1 root root       105 Dec  5 08:46 job.xml
[2025-12-06 06:46:05] -rw-r--r-- 2 root root 409620463 Dec  5 08:46 EVNT.47483658._000171.pool.root.1
[2025-12-06 06:46:05] drwxrwx--x 2 root root      4096 Dec  5 08:46 shared
[2025-12-06 06:46:05] -rw-r--r-- 2 root root    590099 Dec  5 08:46 input.tar.gz
[2025-12-06 06:46:05] -rw-r--r-- 2 root root     15847 Dec  5 08:46 start_atlas.sh
[2025-12-06 06:46:05] -rw-r--r-- 1 root root         0 Dec  5 08:46 boinc_setup_complete
[2025-12-06 06:46:05] -rw-r--r-- 1 root root      9237 Dec  5 08:46 init_data.xml
[2025-12-06 06:46:05] -rw-r--r-- 1 root root         0 Dec  5 08:46 boinc_lockfile
[2025-12-06 06:46:05] -rw-r--r-- 1 root root      2785 Dec  5 08:46 pandaJob.out
[2025-12-06 06:46:05] -rw------- 1 root root    985864 Dec  5 08:46 agis_schedconf.cvmfs.json
[2025-12-06 06:46:05] drwxr-xr-x 5  320  320      4096 Dec  5 08:46 pilot3
[2025-12-06 06:46:05] -rw-r--r-- 1 root root       533 Dec  6 06:22 boinc_task_state.xml
[2025-12-06 06:46:05] -rw------- 1 root root 911539588 Dec  6 06:43 HITS.47556137._001703.pool.root.1
[2025-12-06 06:46:05] -rw------- 1 root root      1065 Dec  6 06:44 memory_monitor_summary.json
[2025-12-06 06:46:05] -rw------- 1 root root   1516240 Dec  6 06:44 agis_ddmendpoints.agis.ALL.json
[2025-12-06 06:46:05] -rw------- 1 root root   2617301 Dec  6 06:44 log.47556137._001703.job.log.tgz.1
[2025-12-06 06:46:05] -rw------- 1 root root      8606 Dec  6 06:45 heartbeat.json
[2025-12-06 06:46:05] -rw------- 1 root root        95 Dec  6 06:45 pilot_heartbeat.json
[2025-12-06 06:46:05] -rw-r--r-- 1 root root      8192 Dec  6 06:46 boinc_mmap_file
[2025-12-06 06:46:05] -rw------- 1 root root      4838 Dec  6 06:46 pilotlog.txt
[2025-12-06 06:46:05] -rw-r--r-- 1 root root        29 Dec  6 06:46 wrapper_checkpoint.txt
[2025-12-06 06:46:05] -rw------- 1 root root  10766754 Dec  6 06:46 log.47556137._001703.job.log.1
[2025-12-06 06:46:05] -rw------- 1 root root       353 Dec  6 06:46 output.list
[2025-12-06 06:46:05] -rw-r--r-- 1 root root       620 Dec  6 06:46 runtime_log
[2025-12-06 06:46:05] -rw------- 1 root root  13404160 Dec  6 06:46 result.tar.gz
[2025-12-06 06:46:05] -rw-r--r-- 1 root root      9021 Dec  6 06:46 runtime_log.err
[2025-12-06 06:46:05] -rw------- 1 root root       661 Dec  6 06:46 dLbMDmIppg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmamJKDmhlUMen.diag
[2025-12-06 06:46:05] -rw-r--r-- 1 root root     21690 Dec  6 06:46 stderr.txt
[2025-12-06 06:46:05] HITS file was successfully produced:
[2025-12-06 06:46:05] -rw------- 1 root root 911539588 Dec  6 06:43 shared/HITS.pool.root.1
[2025-12-06 06:46:05]  *** Contents of shared directory: ***
[2025-12-06 06:46:05] total 1303892
[2025-12-06 06:46:05] -rw-r--r-- 2 root root 409620463 Dec  5 08:46 ATLAS.root_0
[2025-12-06 06:46:05] -rw-r--r-- 2 root root    590099 Dec  5 08:46 input.tar.gz
[2025-12-06 06:46:05] -rw-r--r-- 2 root root     15847 Dec  5 08:46 start_atlas.sh
[2025-12-06 06:46:05] -rw------- 1 root root 911539588 Dec  6 06:43 HITS.pool.root.1
[2025-12-06 06:46:05] -rw------- 1 root root  13404160 Dec  6 06:46 result.tar.gz
06:46:06 (2186137): run_atlas exited; CPU time 208740.749966
06:46:06 (2186137): called boinc_finish(0)

</stderr_txt>
]]>

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