Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:00:37 (26372): wrapper (7.7.26015): starting
14:00:37 (26372): wrapper: running run_atlas (--nthreads 12)
[2025-12-01 14:00:37] Arguments: --nthreads 12
[2025-12-01 14:00:37] Threads: 12
[2025-12-01 14:00:37] Checking for CVMFS
[2025-12-01 14:00:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 14:00:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 14:00:38] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 14:00:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 14:00:38] 2.11.2.0 2981 295228 90936 153528 3 68 13229713 20275201 1 130560 1 134192944 99.964 17772198 14721 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-01 14:00:38] CVMFS is ok
[2025-12-01 14:00:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 14:00:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 14:00:38] Further information can be found at the LHC@home message board.
[2025-12-01 14:00:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 14:00:38] Checking for apptainer binary...
[2025-12-01 14:00:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 14:00:38] Running /usr/bin/apptainer --version
[2025-12-01 14:00:38] apptainer version 1.3.2-1.el7
[2025-12-01 14:00:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 14:00:39] c-205-30.aglt2.org
[2025-12-01 14:00:39] apptainer works
[2025-12-01 14:00:39] Set ATHENA_PROC_NUMBER=12
[2025-12-01 14:00:39] Set ATHENA_CORE_NUMBER=12
[2025-12-01 14:00:39] Starting ATLAS job with PandaID=6894292072
[2025-12-01 14:00:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:12:29 (5332): wrapper (7.7.26015): starting
18:12:29 (5332): wrapper: running run_atlas (--nthreads 12)
[2025-12-01 18:12:29] Arguments: --nthreads 12
[2025-12-01 18:12:29] Threads: 12
[2025-12-01 18:12:29] This job has been restarted, cleaning up previous attempt
[2025-12-01 18:12:29] Checking for CVMFS
[2025-12-01 18:12:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 18:12:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 18:12:30] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 18:12:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 18:12:30] 2.11.2.0 2981 295480 92356 153535 0 1 13557849 20275200 1 130560 1 134315090 99.964 17785337 14728 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-01 18:12:30] CVMFS is ok
[2025-12-01 18:12:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 18:12:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 18:12:30] Further information can be found at the LHC@home message board.
[2025-12-01 18:12:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 18:12:30] Checking for apptainer binary...
[2025-12-01 18:12:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 18:12:30] Running /usr/bin/apptainer --version
[2025-12-01 18:12:30] apptainer version 1.3.2-1.el7
[2025-12-01 18:12:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 18:12:31] c-205-30.aglt2.org
[2025-12-01 18:12:31] apptainer works
[2025-12-01 18:12:31] Set ATHENA_PROC_NUMBER=12
[2025-12-01 18:12:31] Set ATHENA_CORE_NUMBER=12
[2025-12-01 18:12:31] Starting ATLAS job with PandaID=6894292072
[2025-12-01 18:12:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 01:23:53]  *** The last 200 lines of the pilot log: ***
[2025-12-02 01:23:53] 2025-12-02 06:23:18,502 | INFO     | monitor loop #1933: job 0:6894292072 is in state 'finished'
[2025-12-02 01:23:53] 2025-12-02 06:23:18,502 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 01:23:53] 2025-12-02 06:23:20,096 | INFO     | time since job start (25834s) is within the limit (172800.0s)
[2025-12-02 01:23:53] 2025-12-02 06:23:20,682 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-02 01:23:53] 2025-12-02 06:23:20,686 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-12-02 01:23:53] 2025-12-02 06:23:20,689 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6894292072/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 01:23:53] 2025-12-02 06:23:20,690 | INFO     | extracted standard info from prmon json
[2025-12-02 01:23:53] 2025-12-02 06:23:20,690 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 01:23:53] 2025-12-02 06:23:20,690 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 01:23:53] 2025-12-02 06:23:20,697 | INFO     | fitting pss+swap vs Time
[2025-12-02 01:23:53] 2025-12-02 06:23:20,697 | INFO     | sum of square deviations: 23469211566.756504
[2025-12-02 01:23:53] 2025-12-02 06:23:20,701 | INFO     | sum of deviations: 410903881207.8914
[2025-12-02 01:23:53] 2025-12-02 06:23:20,702 | INFO     | mean x: 1764643667.2293143
[2025-12-02 01:23:53] 2025-12-02 06:23:20,702 | INFO     | mean y: 3415802.073286052
[2025-12-02 01:23:53] 2025-12-02 06:23:20,702 | INFO     | intersect: -30892335840.497223
[2025-12-02 01:23:53] 2025-12-02 06:23:20,702 | INFO     | chi2: 5.226075338561244
[2025-12-02 01:23:53] 2025-12-02 06:23:20,703 | INFO     | sum of square deviations: 22646797823.990444
[2025-12-02 01:23:53] 2025-12-02 06:23:20,707 | INFO     | sum of deviations: 554073538773.1053
[2025-12-02 01:23:53] 2025-12-02 06:23:20,707 | INFO     | mean x: 1764643514.7320573
[2025-12-02 01:23:53] 2025-12-02 06:23:20,707 | INFO     | mean y: 3442320.947368421
[2025-12-02 01:23:53] 2025-12-02 06:23:20,707 | INFO     | intersect: -43170090841.646126
[2025-12-02 01:23:53] 2025-12-02 06:23:20,707 | INFO     | chi2: 2.806930161435875
[2025-12-02 01:23:53] 2025-12-02 06:23:20,708 | INFO     | current chi2=2.806930161435875 (change=46.28990246802236 %)
[2025-12-02 01:23:53] 2025-12-02 06:23:20,708 | INFO     | sum of square deviations: 21843800929.685303
[2025-12-02 01:23:53] 2025-12-02 06:23:20,712 | INFO     | sum of deviations: 589368888881.493
[2025-12-02 01:23:53] 2025-12-02 06:23:20,712 | INFO     | mean x: 1764643362.2324455
[2025-12-02 01:23:53] 2025-12-02 06:23:20,712 | INFO     | mean y: 3448969.6198547217
[2025-12-02 01:23:53] 2025-12-02 06:23:20,712 | INFO     | intersect: -47608498283.4639
[2025-12-02 01:23:53] 2025-12-02 06:23:20,713 | INFO     | chi2: 2.37824034649447
[2025-12-02 01:23:53] 2025-12-02 06:23:20,713 | INFO     | current chi2=2.37824034649447 (change=15.272550091595802 %)
[2025-12-02 01:23:53] 2025-12-02 06:23:20,713 | INFO     | right removable region: 412
[2025-12-02 01:23:53] 2025-12-02 06:23:20,713 | INFO     | sum of square deviations: 22646738653.990448
[2025-12-02 01:23:53] 2025-12-02 06:23:20,717 | INFO     | sum of deviations: 280433345722.7084
[2025-12-02 01:23:53] 2025-12-02 06:23:20,717 | INFO     | mean x: 1764643819.7320573
[2025-12-02 01:23:53] 2025-12-02 06:23:20,717 | INFO     | mean y: 3439911.827751196
[2025-12-02 01:23:53] 2025-12-02 06:23:20,718 | INFO     | intersect: -21848049520.588314
[2025-12-02 01:23:53] 2025-12-02 06:23:20,718 | INFO     | chi2: 3.0856486751930703
[2025-12-02 01:23:53] 2025-12-02 06:23:20,718 | INFO     | current chi2=3.0856486751930703 (change=40.95667445845586 %)
[2025-12-02 01:23:53] 2025-12-02 06:23:20,719 | INFO     | sum of square deviations: 21843707966.21799
[2025-12-02 01:23:53] 2025-12-02 06:23:20,722 | INFO     | sum of deviations: 238153655364.9952
[2025-12-02 01:23:53] 2025-12-02 06:23:20,723 | INFO     | mean x: 1764643972.2348669
[2025-12-02 01:23:53] 2025-12-02 06:23:20,723 | INFO     | mean y: 3447933.6392251817
[2025-12-02 01:23:53] 2025-12-02 06:23:20,723 | INFO     | intersect: -19235795378.6903
[2025-12-02 01:23:53] 2025-12-02 06:23:20,723 | INFO     | chi2: 2.9774847723458775
[2025-12-02 01:23:53] 2025-12-02 06:23:20,723 | INFO     | current chi2=2.9774847723458775 (change=3.505386200210396 %)
[2025-12-02 01:23:53] 2025-12-02 06:23:20,724 | INFO     | left removable region: 20
[2025-12-02 01:23:53] 2025-12-02 06:23:20,724 | INFO     | sum of square deviations: 18678194947.459244
[2025-12-02 01:23:53] 2025-12-02 06:23:20,727 | INFO     | sum of deviations: 358758682255.0154
[2025-12-02 01:23:53] 2025-12-02 06:23:20,727 | INFO     | mean x: 1764643941.739796
[2025-12-02 01:23:53] 2025-12-02 06:23:20,727 | INFO     | mean y: 3493803.4413265307
[2025-12-02 01:23:53] 2025-12-02 06:23:20,728 | INFO     | intersect: -33890645162.80723
[2025-12-02 01:23:53] 2025-12-02 06:23:20,728 | INFO     | chi2: 0.06522072345196704
[2025-12-02 01:23:53] 2025-12-02 06:23:20,728 | INFO     | current memory leak: 19.21 B/s (using 392 data points, chi2=0.07)
[2025-12-02 01:23:53] 2025-12-02 06:23:20,729 | INFO     | could have reported an average CPU frequency of 2395 MHz (18 samples)
[2025-12-02 01:23:53] 2025-12-02 06:23:20,729 | INFO     | ..............................
[2025-12-02 01:23:53] 2025-12-02 06:23:20,729 | INFO     | . Timing measurements:
[2025-12-02 01:23:53] 2025-12-02 06:23:20,729 | INFO     | . get job = 0 s
[2025-12-02 01:23:53] 2025-12-02 06:23:20,729 | INFO     | . initial setup = 2 s
[2025-12-02 01:23:53] 2025-12-02 06:23:20,729 | INFO     | . payload setup = 7 s
[2025-12-02 01:23:53] 2025-12-02 06:23:20,729 | INFO     | . stage-in = 0 s
[2025-12-02 01:23:53] 2025-12-02 06:23:20,729 | INFO     | . payload execution = 25800 s
[2025-12-02 01:23:53] 2025-12-02 06:23:20,729 | INFO     | . stage-out = 3 s
[2025-12-02 01:23:53] 2025-12-02 06:23:20,730 | INFO     | . log creation = 0 s
[2025-12-02 01:23:53] 2025-12-02 06:23:20,730 | INFO     | ..............................
[2025-12-02 01:23:53] 2025-12-02 06:23:20,809 | INFO     | 
[2025-12-02 01:23:53] 2025-12-02 06:23:20,809 | INFO     | job summary report
[2025-12-02 01:23:53] 2025-12-02 06:23:20,809 | INFO     | --------------------------------------------------
[2025-12-02 01:23:53] 2025-12-02 06:23:20,809 | INFO     | PanDA job id: 6894292072
[2025-12-02 01:23:53] 2025-12-02 06:23:20,810 | INFO     | task id: 47533967
[2025-12-02 01:23:53] 2025-12-02 06:23:20,810 | INFO     | errors: (none)
[2025-12-02 01:23:53] 2025-12-02 06:23:20,810 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 01:23:53] 2025-12-02 06:23:20,810 | INFO     | pilot state: finished 
[2025-12-02 01:23:53] 2025-12-02 06:23:20,810 | INFO     | transexitcode: 0
[2025-12-02 01:23:53] 2025-12-02 06:23:20,810 | INFO     | exeerrorcode: 0
[2025-12-02 01:23:53] 2025-12-02 06:23:20,811 | INFO     | exeerrordiag: 
[2025-12-02 01:23:53] 2025-12-02 06:23:20,811 | INFO     | exitcode: 0
[2025-12-02 01:23:53] 2025-12-02 06:23:20,811 | INFO     | exitmsg: OK
[2025-12-02 01:23:53] 2025-12-02 06:23:20,811 | INFO     | cpuconsumptiontime: 295741 s
[2025-12-02 01:23:53] 2025-12-02 06:23:20,811 | INFO     | nevents: 1000
[2025-12-02 01:23:53] 2025-12-02 06:23:20,811 | INFO     | neventsw: 0
[2025-12-02 01:23:53] 2025-12-02 06:23:20,811 | INFO     | pid: 15524
[2025-12-02 01:23:53] 2025-12-02 06:23:20,812 | INFO     | pgrp: 15524
[2025-12-02 01:23:53] 2025-12-02 06:23:20,812 | INFO     | corecount: 12
[2025-12-02 01:23:53] 2025-12-02 06:23:20,812 | INFO     | event service: False
[2025-12-02 01:23:53] 2025-12-02 06:23:20,812 | INFO     | sizes: {0: 2284213, 5: 2284475, 11: 2284531, 25809: 2321796, 25812: 2330846, 25818: 2331036}
[2025-12-02 01:23:53] 2025-12-02 06:23:20,812 | INFO     | --------------------------------------------------
[2025-12-02 01:23:53] 2025-12-02 06:23:20,812 | INFO     | 
[2025-12-02 01:23:53] 2025-12-02 06:23:20,813 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-02 01:23:53] 2025-12-02 06:23:20,835 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 01:23:53] 2025-12-02 06:23:20,835 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 01:23:53] 2025-12-02 06:23:20,836 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 01:23:53] 2025-12-02 06:23:20,836 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 01:23:53] 2025-12-02 06:23:20,836 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 01:23:53] 2025-12-02 06:23:20,836 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 01:23:53] 2025-12-02 06:23:20,836 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 01:23:53] 2025-12-02 06:23:20,836 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 01:23:53] 2025-12-02 06:23:20,837 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 01:23:53] 2025-12-02 06:23:20,837 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 01:23:53] 2025-12-02 06:23:20,837 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 01:23:53] 2025-12-02 06:23:20,837 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 01:23:53] 2025-12-02 06:23:20,837 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 01:23:53] 2025-12-02 06:23:20,837 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 01:23:53] 2025-12-02 06:23:20,838 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 01:23:53] 2025-12-02 06:23:20,838 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 01:23:53] 2025-12-02 06:23:20,838 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 01:23:53] 2025-12-02 06:23:20,838 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 01:23:53] 2025-12-02 06:23:20,838 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 01:23:53] 2025-12-02 06:23:20,838 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 01:23:53] 2025-12-02 06:23:20,839 | INFO     | job 6894292072 has completed (purged errors)
[2025-12-02 01:23:53] 2025-12-02 06:23:20,839 | INFO     | overall cleanup function is called
[2025-12-02 01:23:53] 2025-12-02 06:23:21,855 | INFO     | --- collectZombieJob: --- 10, [15524]
[2025-12-02 01:23:53] 2025-12-02 06:23:21,855 | INFO     | zombie collector waiting for pid 15524
[2025-12-02 01:23:53] 2025-12-02 06:23:21,855 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 01:23:53] 2025-12-02 06:23:21,855 | INFO     | collected zombie processes
[2025-12-02 01:23:53] 2025-12-02 06:23:21,856 | INFO     | will attempt to kill all subprocesses of pid=15524
[2025-12-02 01:23:53] 2025-12-02 06:23:21,949 | INFO     | process IDs to be killed: [15524] (in reverse order)
[2025-12-02 01:23:53] 2025-12-02 06:23:22,000 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 01:23:53] 2025-12-02 06:23:22,000 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 01:23:53] 2025-12-02 06:23:22,004 | INFO     | did not find any defunct processes belonging to 15524
[2025-12-02 01:23:53] 2025-12-02 06:23:22,008 | INFO     | did not find any defunct processes belonging to 15524
[2025-12-02 01:23:53] 2025-12-02 06:23:22,010 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 01:23:53] 2025-12-02 06:23:22,010 | INFO     | ready for new job
[2025-12-02 01:23:53] 2025-12-02 06:23:22,010 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 01:23:53] 2025-12-02 06:23:22,012 | INFO     | ***************************************
[2025-12-02 01:23:53] 2025-12-02 06:23:22,013 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 01:23:53] 2025-12-02 06:23:22,013 | INFO     | ***************************************
[2025-12-02 01:23:53] 2025-12-02 06:23:22,013 | INFO     | 
[2025-12-02 01:23:53] 2025-12-02 06:23:22,013 | INFO     | architecture information:
[2025-12-02 01:23:53] 2025-12-02 06:23:22,014 | INFO     | executing command: cat /etc/os-release
[2025-12-02 01:23:53] 2025-12-02 06:23:22,029 | INFO     | cat /etc/os-release:
[2025-12-02 01:23:53] NAME="CentOS Linux"
[2025-12-02 01:23:53] VERSION="7 (Core)"
[2025-12-02 01:23:53] ID="centos"
[2025-12-02 01:23:53] ID_LIKE="rhel fedora"
[2025-12-02 01:23:53] VERSION_ID="7"
[2025-12-02 01:23:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 01:23:53] ANSI_COLOR="0;31"
[2025-12-02 01:23:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 01:23:53] HOME_URL="https://www.centos.org/"
[2025-12-02 01:23:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 01:23:53] 
[2025-12-02 01:23:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 01:23:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 01:23:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 01:23:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 01:23:53] 
[2025-12-02 01:23:53] 2025-12-02 06:23:22,029 | INFO     | ***************************************
[2025-12-02 01:23:53] 2025-12-02 06:23:22,530 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-02 01:23:53] 2025-12-02 06:23:22,547 | INFO     | sufficient remaining disk space (28257026048 B)
[2025-12-02 01:23:53] 2025-12-02 06:23:22,547 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 01:23:53] 2025-12-02 06:23:22,547 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 01:23:53] 2025-12-02 06:23:22,547 | INFO     | update_server=False
[2025-12-02 01:23:53] 2025-12-02 06:23:22,547 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 01:23:53] 2025-12-02 06:23:22,548 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 01:23:53] 2025-12-02 06:23:22,548 | INFO     | aborting loop
[2025-12-02 01:23:53] 2025-12-02 06:23:22,548 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 01:23:53] 2025-12-02 06:23:22,646 | INFO     | all payload control threads have been joined
[2025-12-02 01:23:53] 2025-12-02 06:23:22,720 | INFO     | all job control threads have been joined
[2025-12-02 01:23:53] 2025-12-02 06:23:22,999 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 01:23:53] 2025-12-02 06:23:23,552 | INFO     | [job] retrieve thread has finished
[2025-12-02 01:23:53] 2025-12-02 06:23:23,553 | INFO     | [job] job monitor thread has finished
[2025-12-02 01:23:53] 2025-12-02 06:23:23,554 | INFO     | [job] queue monitor thread has finished
[2025-12-02 01:23:53] 2025-12-02 06:23:23,564 | INFO     | all data control threads have been joined
[2025-12-02 01:23:53] 2025-12-02 06:23:23,651 | INFO     | [payload] control thread has finished
[2025-12-02 01:23:53] 2025-12-02 06:23:23,726 | INFO     | [job] control thread has finished
[2025-12-02 01:23:53] 2025-12-02 06:23:23,795 | INFO     | [payload] validate_post thread has finished
[2025-12-02 01:23:53] 2025-12-02 06:23:24,316 | INFO     | [data] copytool_in thread has finished
[2025-12-02 01:23:53] 2025-12-02 06:23:24,509 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 01:23:53] 2025-12-02 06:23:24,570 | INFO     | [data] control thread has finished
[2025-12-02 01:23:53] 2025-12-02 06:23:24,675 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 01:23:53] 2025-12-02 06:23:24,729 | INFO     | [job] validate thread has finished
[2025-12-02 01:23:53] 2025-12-02 06:23:24,848 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 01:23:53] 2025-12-02 06:23:25,004 | INFO     | [data] copytool_out thread has finished
[2025-12-02 01:23:53] 2025-12-02 06:23:25,152 | INFO     | [payload] failed_post thread has finished
[2025-12-02 01:23:53] 2025-12-02 06:23:25,898 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 01:23:53] 2025-12-02 06:23:28,291 | INFO     | [monitor] cgroup control has ended
[2025-12-02 01:23:53] 2025-12-02 06:23:29,904 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 01:23:53] 2025-12-02 06:23:32,690 | INFO     | job.realtimelogging is not enabled
[2025-12-02 01:23:53] 2025-12-02 06:23:33,695 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 01:23:53] 2025-12-02 06:23:35,218 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140082433845056)>', '<ExcThread(monitor, started 140081583068928)>']
[2025-12-02 01:23:53] 2025-12-02 06:23:40,244 | INFO     | all workflow threads have been joined
[2025-12-02 01:23:53] 2025-12-02 06:23:40,244 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 01:23:53] 2025-12-02 06:23:40,244 | INFO     | traces error code: 0
[2025-12-02 01:23:53] 2025-12-02 06:23:40,245 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 01:23:53] 2025-12-02 06:23:53,296 | INFO     | PID=9049 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-02 01:23:53] 2025-12-02 06:23:53,297 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 01:23:53] 2025-12-02 06:23:53,297 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 01:23:53] 2025-12-02 06:23:53,297 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 01:23:53] 2025-12-02 06:23:53,297 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 01:23:53] 2025-12-02 06:23:53,297 | INFO     | [monitor] control thread has ended
[2025-12-02 01:23:53] 2025-12-02 06:23:53,378 [wrapper] ==== pilot stdout END ====
[2025-12-02 01:23:53] 2025-12-02 06:23:53,381 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 01:23:53] 2025-12-02 06:23:53,385 [wrapper] pilotpid: 9049
[2025-12-02 01:23:53] 2025-12-02 06:23:53,388 [wrapper] Pilot exit status: 0
[2025-12-02 01:23:53] 2025-12-02 06:23:53,402 [wrapper] pandaids: 6894292072 6894292072
[2025-12-02 01:23:53] 2025-12-02 06:23:53,442 [wrapper] cleanup supervisor_pilot  3764 9050
[2025-12-02 01:23:53] 2025-12-02 06:23:53,446 [wrapper] Test setup, not cleaning
[2025-12-02 01:23:53] 2025-12-02 06:23:53,449 [wrapper] apfmon messages muted
[2025-12-02 01:23:53] 2025-12-02 06:23:53,453 [wrapper] ==== wrapper stdout END ====
[2025-12-02 01:23:53] 2025-12-02 06:23:53,457 [wrapper] ==== wrapper stderr END ====
[2025-12-02 01:23:53]  *** Error codes and diagnostics ***
[2025-12-02 01:23:53]     "exeErrorCode": 0,
[2025-12-02 01:23:53]     "exeErrorDiag": "",
[2025-12-02 01:23:53]     "pilotErrorCode": 0,
[2025-12-02 01:23:53]     "pilotErrorDiag": "",
[2025-12-02 01:23:53]  *** Listing of results directory ***
[2025-12-02 01:23:53] total 1703636
[2025-12-02 01:23:53] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-02 01:23:53] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 07:22 queuedata.json
[2025-12-02 01:23:53] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 07:22 pilot3.tar.gz
[2025-12-02 01:23:53] -rwx------ 1 boincer umatlas     36292 Nov 21 07:22 runpilot2-wrapper.sh
[2025-12-02 01:23:53] -rw-r--r-- 1 boincer umatlas       100 Dec  1 14:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 01:23:53] -rwxr-xr-x 1 boincer umatlas      7986 Dec  1 14:00 run_atlas
[2025-12-02 01:23:53] -rw-r--r-- 1 boincer umatlas       105 Dec  1 14:00 job.xml
[2025-12-02 01:23:53] -rw-r--r-- 3 boincer umatlas 407928433 Dec  1 14:00 EVNT.47493127._002449.pool.root.1
[2025-12-02 01:23:53] -rw-r--r-- 3 boincer umatlas 407928433 Dec  1 14:00 ATLAS.root_0
[2025-12-02 01:23:53] -rw-r--r-- 2 boincer umatlas     15847 Dec  1 14:00 start_atlas.sh
[2025-12-02 01:23:53] drwxrwx--x 2 boincer umatlas      4096 Dec  1 14:00 shared
[2025-12-02 01:23:53] -rw-r--r-- 2 boincer umatlas    590104 Dec  1 14:00 input.tar.gz
[2025-12-02 01:23:53] -rw-r--r-- 1 boincer umatlas         0 Dec  1 14:00 boinc_lockfile
[2025-12-02 01:23:53] -rw-r--r-- 1 boincer umatlas      2784 Dec  1 18:12 pandaJob.out
[2025-12-02 01:23:53] -rw------- 1 boincer umatlas        57 Dec  1 18:12 setup.sh.local
[2025-12-02 01:23:53] -rw------- 1 boincer umatlas    992004 Dec  1 18:12 agis_schedconf.cvmfs.json
[2025-12-02 01:23:53] -rw-r--r-- 1 boincer umatlas       532 Dec  2 01:14 boinc_task_state.xml
[2025-12-02 01:23:53] -rw-r--r-- 1 boincer umatlas      5955 Dec  2 01:18 init_data.xml
[2025-12-02 01:23:53] -rw------- 1 boincer umatlas 913134505 Dec  2 01:22 HITS.47533967._004208.pool.root.1
[2025-12-02 01:23:53] -rw------- 1 boincer umatlas        96 Dec  2 01:22 pilot_heartbeat.json
[2025-12-02 01:23:53] -rw------- 1 boincer umatlas      1062 Dec  2 01:23 memory_monitor_summary.json
[2025-12-02 01:23:53] -rw------- 1 boincer umatlas   1516240 Dec  2 01:23 agis_ddmendpoints.agis.ALL.json
[2025-12-02 01:23:53] -rw------- 1 boincer umatlas   2181407 Dec  2 01:23 log.47533967._004208.job.log.tgz.1
[2025-12-02 01:23:53] -rw------- 1 boincer umatlas      8668 Dec  2 01:23 heartbeat.json
[2025-12-02 01:23:53] -rw-r--r-- 1 boincer umatlas      8192 Dec  2 01:23 boinc_mmap_file
[2025-12-02 01:23:53] -rw-r--r-- 1 boincer umatlas        29 Dec  2 01:23 wrapper_checkpoint.txt
[2025-12-02 01:23:53] -rw------- 1 boincer umatlas       744 Dec  2 01:23 pilotlog.txt
[2025-12-02 01:23:53] -rw------- 1 boincer umatlas   3627302 Dec  2 01:23 log.47533967._004208.job.log.1
[2025-12-02 01:23:53] -rw------- 1 boincer umatlas       353 Dec  2 01:23 output.list
[2025-12-02 01:23:53] -rw-r--r-- 1 boincer umatlas       620 Dec  2 01:23 runtime_log
[2025-12-02 01:23:53] -rw------- 1 boincer umatlas   5826560 Dec  2 01:23 result.tar.gz
[2025-12-02 01:23:53] -rw-r--r-- 1 boincer umatlas      9430 Dec  2 01:23 runtime_log.err
[2025-12-02 01:23:53] -rw------- 1 boincer umatlas       795 Dec  2 01:23 mzVMDmhKfg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpPJKDmGayoXo.diag
[2025-12-02 01:23:53] -rw-r--r-- 1 boincer umatlas     23419 Dec  2 01:23 stderr.txt
[2025-12-02 01:23:53] HITS file was successfully produced:
[2025-12-02 01:23:53] -rw------- 1 boincer umatlas 913134505 Dec  2 01:22 shared/HITS.pool.root.1
[2025-12-02 01:23:53]  *** Contents of shared directory: ***
[2025-12-02 01:23:53] total 1296396
[2025-12-02 01:23:53] -rw-r--r-- 3 boincer umatlas 407928433 Dec  1 14:00 ATLAS.root_0
[2025-12-02 01:23:53] -rw-r--r-- 2 boincer umatlas     15847 Dec  1 14:00 start_atlas.sh
[2025-12-02 01:23:53] -rw-r--r-- 2 boincer umatlas    590104 Dec  1 14:00 input.tar.gz
[2025-12-02 01:23:53] -rw------- 1 boincer umatlas 913134505 Dec  2 01:22 HITS.pool.root.1
[2025-12-02 01:23:53] -rw------- 1 boincer umatlas   5826560 Dec  2 01:23 result.tar.gz
01:23:55 (5332): run_atlas exited; CPU time 288744.399900
01:23:55 (5332): called boinc_finish(0)

</stderr_txt>
]]>

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