Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
09:50:47 (126252): wrapper (7.7.26015): starting
09:50:47 (126252): wrapper: running run_atlas (--nthreads 10)
[2025-12-01 09:50:47] Arguments: --nthreads 10
[2025-12-01 09:50:47] Threads: 10
[2025-12-01 09:50:47] Checking for CVMFS
[2025-12-01 09:50:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 09:50:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 09:50:47] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 09:50:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 09:50:48] 2.13.3.0 8606 10 43672 153527 1 90 3828632 4096000 5209 130560 0 348502 99.995 2824 955 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-01 09:50:48] CVMFS is ok
[2025-12-01 09:50:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 09:50:48] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-01 09:50:48] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-01 09:50:48] Further information can be found at the LHC@home message board.
[2025-12-01 09:50:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 09:50:48] Checking for apptainer binary...
[2025-12-01 09:50:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 09:50:48] Running /usr/bin/apptainer --version
[2025-12-01 09:50:48] apptainer version 1.4.2
[2025-12-01 09:50:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 09:50:48] 3950x-linux
[2025-12-01 09:50:48] apptainer works
[2025-12-01 09:50:48] Set ATHENA_PROC_NUMBER=10
[2025-12-01 09:50:48] Set ATHENA_CORE_NUMBER=10
[2025-12-01 09:50:48] Starting ATLAS job with PandaID=6894290966
[2025-12-01 09:50:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc233/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 08:01:49]  *** The last 200 lines of the pilot log: ***
[2025-12-02 08:01:49] 2025-12-02 16:01:14,119 | INFO     | time since job start (79806s) is within the limit (172800.0s)
[2025-12-02 08:01:49] 2025-12-02 16:01:16,124 | INFO     | time since job start (79808s) is within the limit (172800.0s)
[2025-12-02 08:01:49] 2025-12-02 16:01:16,201 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 08:01:49] 2025-12-02 16:01:16,204 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 2708.65540625
[2025-12-02 08:01:49] 2025-12-02 16:01:16,207 | INFO     | using path: /var/lib/multiboinc/boinc233/slots/1/PanDA_Pilot-6894290966/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 08:01:49] 2025-12-02 16:01:16,208 | INFO     | extracted standard info from prmon json
[2025-12-02 08:01:49] 2025-12-02 16:01:16,208 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 08:01:49] 2025-12-02 16:01:16,208 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 08:01:49] 2025-12-02 16:01:16,219 | INFO     | fitting pss+swap vs Time
[2025-12-02 08:01:49] 2025-12-02 16:01:16,220 | INFO     | sum of square deviations: 693905412959.2866
[2025-12-02 08:01:49] 2025-12-02 16:01:16,237 | INFO     | sum of deviations: 4241527631142.0137
[2025-12-02 08:01:49] 2025-12-02 16:01:16,237 | INFO     | mean x: 1764651374.3050458
[2025-12-02 08:01:49] 2025-12-02 16:01:16,238 | INFO     | mean y: 3155458.0726299696
[2025-12-02 08:01:49] 2025-12-02 16:01:16,238 | INFO     | intersect: -10783354379.813208
[2025-12-02 08:01:49] 2025-12-02 16:01:16,238 | INFO     | chi2: 7.111640640873774
[2025-12-02 08:01:49] 2025-12-02 16:01:16,239 | INFO     | sum of square deviations: 685979257749.7957
[2025-12-02 08:01:49] 2025-12-02 16:01:16,257 | INFO     | sum of deviations: 4651637636711.677
[2025-12-02 08:01:49] 2025-12-02 16:01:16,257 | INFO     | mean x: 1764651221.8158097
[2025-12-02 08:01:49] 2025-12-02 16:01:16,257 | INFO     | mean y: 3163344.2486569453
[2025-12-02 08:01:49] 2025-12-02 16:01:16,257 | INFO     | intersect: -11962968206.13365
[2025-12-02 08:01:49] 2025-12-02 16:01:16,258 | INFO     | chi2: 4.642165445026799
[2025-12-02 08:01:49] 2025-12-02 16:01:16,258 | INFO     | current chi2=4.642165445026799 (change=34.72440918420144 %)
[2025-12-02 08:01:49] 2025-12-02 16:01:16,258 | INFO     | sum of square deviations: 678113232063.3884
[2025-12-02 08:01:49] 2025-12-02 16:01:16,276 | INFO     | sum of deviations: 4708283832457.328
[2025-12-02 08:01:49] 2025-12-02 16:01:16,276 | INFO     | mean x: 1764651069.322034
[2025-12-02 08:01:49] 2025-12-02 16:01:16,276 | INFO     | mean y: 3164439.0446841293
[2025-12-02 08:01:49] 2025-12-02 16:01:16,276 | INFO     | intersect: -12249181786.874132
[2025-12-02 08:01:49] 2025-12-02 16:01:16,277 | INFO     | chi2: 4.440139558843124
[2025-12-02 08:01:49] 2025-12-02 16:01:16,277 | INFO     | current chi2=4.440139558843124 (change=4.351975141258855 %)
[2025-12-02 08:01:49] 2025-12-02 16:01:16,277 | INFO     | right removable region: 1297
[2025-12-02 08:01:49] 2025-12-02 16:01:16,277 | INFO     | sum of square deviations: 685977019659.7946
[2025-12-02 08:01:49] 2025-12-02 16:01:16,295 | INFO     | sum of deviations: 3738998013349.2993
[2025-12-02 08:01:49] 2025-12-02 16:01:16,295 | INFO     | mean x: 1764651526.8158097
[2025-12-02 08:01:49] 2025-12-02 16:01:16,295 | INFO     | mean y: 3165122.5095932465
[2025-12-02 08:01:49] 2025-12-02 16:01:16,295 | INFO     | intersect: -9615274510.191755
[2025-12-02 08:01:49] 2025-12-02 16:01:16,296 | INFO     | chi2: 3.975544252589427
[2025-12-02 08:01:49] 2025-12-02 16:01:16,296 | INFO     | current chi2=3.975544252589427 (change=44.09807169192156 %)
[2025-12-02 08:01:49] 2025-12-02 16:01:16,296 | INFO     | sum of square deviations: 678109708335.389
[2025-12-02 08:01:49] 2025-12-02 16:01:16,314 | INFO     | sum of deviations: 3496544209308.0674
[2025-12-02 08:01:49] 2025-12-02 16:01:16,314 | INFO     | mean x: 1764651679.322034
[2025-12-02 08:01:49] 2025-12-02 16:01:16,314 | INFO     | mean y: 3169818.2318952233
[2025-12-02 08:01:49] 2025-12-02 16:01:16,314 | INFO     | intersect: -9095922164.871637
[2025-12-02 08:01:49] 2025-12-02 16:01:16,315 | INFO     | chi2: 3.2282335762335106
[2025-12-02 08:01:49] 2025-12-02 16:01:16,315 | INFO     | current chi2=3.2282335762335106 (change=18.797694828051874 %)
[2025-12-02 08:01:49] 2025-12-02 16:01:16,315 | INFO     | left removable region: 20
[2025-12-02 08:01:49] 2025-12-02 16:01:16,315 | INFO     | sum of square deviations: 645728062899.4103
[2025-12-02 08:01:49] 2025-12-02 16:01:16,332 | INFO     | sum of deviations: 3716877147609.613
[2025-12-02 08:01:49] 2025-12-02 16:01:16,332 | INFO     | mean x: 1764651648.8402505
[2025-12-02 08:01:49] 2025-12-02 16:01:16,332 | INFO     | mean y: 3183678.57165231
[2025-12-02 08:01:49] 2025-12-02 16:01:16,332 | INFO     | intersect: -10154332718.67945
[2025-12-02 08:01:49] 2025-12-02 16:01:16,333 | INFO     | chi2: 0.363930130935036
[2025-12-02 08:01:49] 2025-12-02 16:01:16,333 | INFO     | current memory leak: 5.76 B/s (using 1277 data points, chi2=0.36)
[2025-12-02 08:01:49] 2025-12-02 16:01:16,334 | INFO     | could have reported an average CPU frequency of 3385 MHz (47 samples)
[2025-12-02 08:01:49] 2025-12-02 16:01:16,334 | INFO     | ..............................
[2025-12-02 08:01:49] 2025-12-02 16:01:16,334 | INFO     | . Timing measurements:
[2025-12-02 08:01:49] 2025-12-02 16:01:16,334 | INFO     | . get job = 0 s
[2025-12-02 08:01:49] 2025-12-02 16:01:16,334 | INFO     | . initial setup = 4 s
[2025-12-02 08:01:49] 2025-12-02 16:01:16,334 | INFO     | . payload setup = 11 s
[2025-12-02 08:01:49] 2025-12-02 16:01:16,334 | INFO     | . stage-in = 0 s
[2025-12-02 08:01:49] 2025-12-02 16:01:16,334 | INFO     | . payload execution = 79765 s
[2025-12-02 08:01:49] 2025-12-02 16:01:16,334 | INFO     | . stage-out = 3 s
[2025-12-02 08:01:49] 2025-12-02 16:01:16,334 | INFO     | . log creation = 0 s
[2025-12-02 08:01:49] 2025-12-02 16:01:16,334 | INFO     | ..............................
[2025-12-02 08:01:49] 2025-12-02 16:01:16,385 | INFO     | 
[2025-12-02 08:01:49] 2025-12-02 16:01:16,385 | INFO     | job summary report
[2025-12-02 08:01:49] 2025-12-02 16:01:16,385 | INFO     | --------------------------------------------------
[2025-12-02 08:01:49] 2025-12-02 16:01:16,385 | INFO     | PanDA job id: 6894290966
[2025-12-02 08:01:49] 2025-12-02 16:01:16,385 | INFO     | task id: 47533967
[2025-12-02 08:01:49] 2025-12-02 16:01:16,385 | INFO     | errors: (none)
[2025-12-02 08:01:49] 2025-12-02 16:01:16,386 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 08:01:49] 2025-12-02 16:01:16,386 | INFO     | pilot state: finished 
[2025-12-02 08:01:49] 2025-12-02 16:01:16,386 | INFO     | transexitcode: 0
[2025-12-02 08:01:49] 2025-12-02 16:01:16,386 | INFO     | exeerrorcode: 0
[2025-12-02 08:01:49] 2025-12-02 16:01:16,386 | INFO     | exeerrordiag: 
[2025-12-02 08:01:49] 2025-12-02 16:01:16,386 | INFO     | exitcode: 0
[2025-12-02 08:01:49] 2025-12-02 16:01:16,386 | INFO     | exitmsg: OK
[2025-12-02 08:01:49] 2025-12-02 16:01:16,386 | INFO     | cpuconsumptiontime: 206747 s
[2025-12-02 08:01:49] 2025-12-02 16:01:16,386 | INFO     | nevents: 1000
[2025-12-02 08:01:49] 2025-12-02 16:01:16,386 | INFO     | neventsw: 0
[2025-12-02 08:01:49] 2025-12-02 16:01:16,386 | INFO     | pid: 159103
[2025-12-02 08:01:49] 2025-12-02 16:01:16,386 | INFO     | pgrp: 159103
[2025-12-02 08:01:49] 2025-12-02 16:01:16,386 | INFO     | corecount: 10
[2025-12-02 08:01:49] 2025-12-02 16:01:16,386 | INFO     | event service: False
[2025-12-02 08:01:49] 2025-12-02 16:01:16,386 | INFO     | sizes: {0: 2284107, 1: 2284306, 9: 2284568, 12: 2284596, 79780: 2348730, 79781: 2348729, 79784: 2357963, 79786: 2358019, 79789: 2358265}
[2025-12-02 08:01:49] 2025-12-02 16:01:16,386 | INFO     | --------------------------------------------------
[2025-12-02 08:01:49] 2025-12-02 16:01:16,387 | INFO     | 
[2025-12-02 08:01:49] 2025-12-02 16:01:16,387 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc233/slots/1
[2025-12-02 08:01:49] 2025-12-02 16:01:16,403 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 08:01:49] 2025-12-02 16:01:16,403 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 08:01:49] 2025-12-02 16:01:16,403 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 08:01:49] 2025-12-02 16:01:16,403 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 08:01:49] 2025-12-02 16:01:16,404 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 08:01:49] 2025-12-02 16:01:16,404 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 08:01:49] 2025-12-02 16:01:16,404 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 08:01:49] 2025-12-02 16:01:16,404 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 08:01:49] 2025-12-02 16:01:16,404 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 08:01:49] 2025-12-02 16:01:16,404 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 08:01:49] 2025-12-02 16:01:16,404 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 08:01:49] 2025-12-02 16:01:16,404 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 08:01:49] 2025-12-02 16:01:16,404 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 08:01:49] 2025-12-02 16:01:16,404 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 08:01:49] 2025-12-02 16:01:16,404 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 08:01:49] 2025-12-02 16:01:16,404 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 08:01:49] 2025-12-02 16:01:16,404 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 08:01:49] 2025-12-02 16:01:16,404 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 08:01:49] 2025-12-02 16:01:16,404 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 08:01:49] 2025-12-02 16:01:16,404 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 08:01:49] 2025-12-02 16:01:16,405 | INFO     | job 6894290966 has completed (purged errors)
[2025-12-02 08:01:49] 2025-12-02 16:01:16,405 | INFO     | overall cleanup function is called
[2025-12-02 08:01:49] 2025-12-02 16:01:17,419 | INFO     | --- collectZombieJob: --- 10, [159103]
[2025-12-02 08:01:49] 2025-12-02 16:01:17,420 | INFO     | zombie collector waiting for pid 159103
[2025-12-02 08:01:49] 2025-12-02 16:01:17,420 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 08:01:49] 2025-12-02 16:01:17,420 | INFO     | collected zombie processes
[2025-12-02 08:01:49] 2025-12-02 16:01:17,420 | INFO     | will attempt to kill all subprocesses of pid=159103
[2025-12-02 08:01:49] 2025-12-02 16:01:17,548 | INFO     | process IDs to be killed: [159103] (in reverse order)
[2025-12-02 08:01:49] 2025-12-02 16:01:17,600 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 08:01:49] 2025-12-02 16:01:17,600 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 08:01:49] 2025-12-02 16:01:17,604 | INFO     | did not find any defunct processes belonging to 159103
[2025-12-02 08:01:49] 2025-12-02 16:01:17,607 | INFO     | did not find any defunct processes belonging to 159103
[2025-12-02 08:01:49] 2025-12-02 16:01:17,608 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 08:01:49] 2025-12-02 16:01:17,608 | INFO     | ready for new job
[2025-12-02 08:01:49] 2025-12-02 16:01:17,608 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 08:01:49] 2025-12-02 16:01:17,613 | INFO     | ***************************************
[2025-12-02 08:01:49] 2025-12-02 16:01:17,613 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 08:01:49] 2025-12-02 16:01:17,613 | INFO     | ***************************************
[2025-12-02 08:01:49] 2025-12-02 16:01:17,613 | INFO     | 
[2025-12-02 08:01:49] 2025-12-02 16:01:17,614 | INFO     | architecture information:
[2025-12-02 08:01:49] 2025-12-02 16:01:17,614 | INFO     | executing command: cat /etc/os-release
[2025-12-02 08:01:49] 2025-12-02 16:01:17,626 | INFO     | cat /etc/os-release:
[2025-12-02 08:01:49] NAME="CentOS Linux"
[2025-12-02 08:01:49] VERSION="7 (Core)"
[2025-12-02 08:01:49] ID="centos"
[2025-12-02 08:01:49] ID_LIKE="rhel fedora"
[2025-12-02 08:01:49] VERSION_ID="7"
[2025-12-02 08:01:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 08:01:49] ANSI_COLOR="0;31"
[2025-12-02 08:01:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 08:01:49] HOME_URL="https://www.centos.org/"
[2025-12-02 08:01:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 08:01:49] 
[2025-12-02 08:01:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 08:01:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 08:01:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 08:01:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 08:01:49] 
[2025-12-02 08:01:49] 2025-12-02 16:01:17,626 | INFO     | ***************************************
[2025-12-02 08:01:49] 2025-12-02 16:01:18,129 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc233/slots/1
[2025-12-02 08:01:49] 2025-12-02 16:01:18,141 | INFO     | sufficient remaining disk space (59497250816 B)
[2025-12-02 08:01:49] 2025-12-02 16:01:18,142 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 08:01:49] 2025-12-02 16:01:18,142 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 08:01:49] 2025-12-02 16:01:18,142 | INFO     | update_server=False
[2025-12-02 08:01:49] 2025-12-02 16:01:18,142 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 08:01:49] 2025-12-02 16:01:18,142 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 08:01:49] 2025-12-02 16:01:18,142 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 08:01:49] 2025-12-02 16:01:18,142 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 08:01:49] 2025-12-02 16:01:18,143 | INFO     | aborting loop
[2025-12-02 08:01:49] 2025-12-02 16:01:18,322 | INFO     | all job control threads have been joined
[2025-12-02 08:01:49] 2025-12-02 16:01:19,014 | INFO     | all data control threads have been joined
[2025-12-02 08:01:49] 2025-12-02 16:01:19,147 | INFO     | [job] retrieve thread has finished
[2025-12-02 08:01:49] 2025-12-02 16:01:19,147 | INFO     | [job] queue monitor thread has finished
[2025-12-02 08:01:49] 2025-12-02 16:01:19,148 | INFO     | [job] job monitor thread has finished
[2025-12-02 08:01:49] 2025-12-02 16:01:19,255 | INFO     | [job] validate thread has finished
[2025-12-02 08:01:49] 2025-12-02 16:01:19,328 | INFO     | [job] control thread has finished
[2025-12-02 08:01:49] 2025-12-02 16:01:19,425 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 08:01:49] 2025-12-02 16:01:19,500 | INFO     | [payload] failed_post thread has finished
[2025-12-02 08:01:49] 2025-12-02 16:01:19,531 | INFO     | all payload control threads have been joined
[2025-12-02 08:01:49] 2025-12-02 16:01:19,601 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 08:01:49] 2025-12-02 16:01:19,726 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 08:01:49] 2025-12-02 16:01:19,842 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 08:01:49] 2025-12-02 16:01:20,018 | INFO     | [data] control thread has finished
[2025-12-02 08:01:49] 2025-12-02 16:01:20,147 | INFO     | [data] copytool_in thread has finished
[2025-12-02 08:01:49] 2025-12-02 16:01:20,147 | INFO     | [data] copytool_out thread has finished
[2025-12-02 08:01:49] 2025-12-02 16:01:20,537 | INFO     | [payload] control thread has finished
[2025-12-02 08:01:49] 2025-12-02 16:01:20,626 | INFO     | [payload] validate_post thread has finished
[2025-12-02 08:01:49] 2025-12-02 16:01:22,056 | INFO     | [monitor] cgroup control has ended
[2025-12-02 08:01:49] 2025-12-02 16:01:23,431 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 08:01:49] 2025-12-02 16:01:28,316 | INFO     | job.realtimelogging is not enabled
[2025-12-02 08:01:49] 2025-12-02 16:01:29,322 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 08:01:49] 2025-12-02 16:01:30,929 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130870130853696)>', '<ExcThread(monitor, started 130869255726848)>']
[2025-12-02 08:01:49] 2025-12-02 16:01:35,954 | INFO     | all workflow threads have been joined
[2025-12-02 08:01:49] 2025-12-02 16:01:35,954 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 08:01:49] 2025-12-02 16:01:35,954 | INFO     | traces error code: 0
[2025-12-02 08:01:49] 2025-12-02 16:01:35,954 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 08:01:49] 2025-12-02 16:01:49,310 | INFO     | PID=137937 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 08:01:49] 2025-12-02 16:01:49,310 | INFO     | .. there are 5 such processes running
[2025-12-02 08:01:49] 2025-12-02 16:01:49,540 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 08:01:49] 2025-12-02 16:01:49,540 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 08:01:49] 2025-12-02 16:01:49,540 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 08:01:49] 2025-12-02 16:01:49,540 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 08:01:49] 2025-12-02 16:01:49,541 | INFO     | [monitor] control thread has ended
[2025-12-02 08:01:49] 2025-12-02 16:01:49,603 [wrapper] ==== pilot stdout END ====
[2025-12-02 08:01:49] 2025-12-02 16:01:49,605 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 08:01:49] 2025-12-02 16:01:49,607 [wrapper] pilotpid: 137937
[2025-12-02 08:01:49] 2025-12-02 16:01:49,609 [wrapper] Pilot exit status: 0
[2025-12-02 08:01:49] 2025-12-02 16:01:49,619 [wrapper] pandaids: 6894290966
[2025-12-02 08:01:49] 2025-12-02 16:01:49,648 [wrapper] cleanup supervisor_pilot 1463080 137938
[2025-12-02 08:01:49] 2025-12-02 16:01:49,650 [wrapper] Test setup, not cleaning
[2025-12-02 08:01:49] 2025-12-02 16:01:49,652 [wrapper] apfmon messages muted
[2025-12-02 08:01:49] 2025-12-02 16:01:49,654 [wrapper] ==== wrapper stdout END ====
[2025-12-02 08:01:49] 2025-12-02 16:01:49,656 [wrapper] ==== wrapper stderr END ====
[2025-12-02 08:01:49]  *** Error codes and diagnostics ***
[2025-12-02 08:01:49]     "exeErrorCode": 0,
[2025-12-02 08:01:49]     "exeErrorDiag": "",
[2025-12-02 08:01:49]     "pilotErrorCode": 0,
[2025-12-02 08:01:49]     "pilotErrorDiag": "",
[2025-12-02 08:01:49]  *** Listing of results directory ***
[2025-12-02 08:01:49] total 1324428
[2025-12-02 08:01:49] -rw-r--r-- 1 root root    576529 Nov 21 04:04 pilot3.tar.gz
[2025-12-02 08:01:49] -rw-r--r-- 1 root root      5112 Nov 21 04:05 queuedata.json
[2025-12-02 08:01:49] -rwx------ 1 4871 1028     36292 Nov 21 04:06 runpilot2-wrapper.sh
[2025-12-02 08:01:49] -rw-r--r-- 1 root root       100 Dec  1 09:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 08:01:49] -rwxr-xr-x 1 root root      7986 Dec  1 09:50 run_atlas
[2025-12-02 08:01:49] -rw-r--r-- 1 root root       105 Dec  1 09:50 job.xml
[2025-12-02 08:01:49] -rw-r--r-- 2 root root 410011199 Dec  1 09:50 EVNT.47493127._002437.pool.root.1
[2025-12-02 08:01:49] drwxrwx--x 2 root root      4096 Dec  1 09:50 shared
[2025-12-02 08:01:49] -rw-r--r-- 2 root root    590105 Dec  1 09:50 input.tar.gz
[2025-12-02 08:01:49] -rw-r--r-- 2 root root     15847 Dec  1 09:50 start_atlas.sh
[2025-12-02 08:01:49] -rw-r--r-- 1 root root         0 Dec  1 09:50 boinc_setup_complete
[2025-12-02 08:01:49] -rw-r--r-- 1 root root      9234 Dec  1 09:50 init_data.xml
[2025-12-02 08:01:49] -rw-r--r-- 1 root root         0 Dec  1 09:50 boinc_lockfile
[2025-12-02 08:01:49] -rw-r--r-- 1 root root      2785 Dec  1 09:50 pandaJob.out
[2025-12-02 08:01:49] -rw------- 1 root root    991946 Dec  1 09:51 agis_schedconf.cvmfs.json
[2025-12-02 08:01:49] drwxr-xr-x 5  320  320      4096 Dec  1 09:51 pilot3
[2025-12-02 08:01:49] -rw-r--r-- 1 root root       533 Dec  2 07:53 boinc_task_state.xml
[2025-12-02 08:01:49] -rw------- 1 root root 915362701 Dec  2 08:00 HITS.47533967._004083.pool.root.1
[2025-12-02 08:01:49] -rw------- 1 root root      1061 Dec  2 08:01 memory_monitor_summary.json
[2025-12-02 08:01:49] -rw------- 1 root root   1516240 Dec  2 08:01 agis_ddmendpoints.agis.ALL.json
[2025-12-02 08:01:49] -rw------- 1 root root   2618182 Dec  2 08:01 log.47533967._004083.job.log.tgz.1
[2025-12-02 08:01:49] -rw------- 1 root root      8608 Dec  2 08:01 heartbeat.json
[2025-12-02 08:01:49] -rw-r--r-- 1 root root      8192 Dec  2 08:01 boinc_mmap_file
[2025-12-02 08:01:49] -rw-r--r-- 1 root root        29 Dec  2 08:01 wrapper_checkpoint.txt
[2025-12-02 08:01:49] -rw------- 1 root root        95 Dec  2 08:01 pilot_heartbeat.json
[2025-12-02 08:01:49] -rw------- 1 root root       821 Dec  2 08:01 pilotlog.txt
[2025-12-02 08:01:49] -rw------- 1 root root  10843038 Dec  2 08:01 log.47533967._004083.job.log.1
[2025-12-02 08:01:49] -rw------- 1 root root       353 Dec  2 08:01 output.list
[2025-12-02 08:01:49] -rw-r--r-- 1 root root       620 Dec  2 08:01 runtime_log
[2025-12-02 08:01:49] -rw------- 1 root root  13475840 Dec  2 08:01 result.tar.gz
[2025-12-02 08:01:49] -rw-r--r-- 1 root root      9021 Dec  2 08:01 runtime_log.err
[2025-12-02 08:01:49] -rw------- 1 root root       660 Dec  2 08:01 jXmLDmY5eg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5aHKDmsZ8ILm.diag
[2025-12-02 08:01:49] -rw-r--r-- 1 root root     21395 Dec  2 08:01 stderr.txt
[2025-12-02 08:01:49] HITS file was successfully produced:
[2025-12-02 08:01:49] -rw------- 1 root root 915362701 Dec  2 08:00 shared/HITS.pool.root.1
[2025-12-02 08:01:49]  *** Contents of shared directory: ***
[2025-12-02 08:01:49] total 1308080
[2025-12-02 08:01:49] -rw-r--r-- 2 root root 410011199 Dec  1 09:50 ATLAS.root_0
[2025-12-02 08:01:49] -rw-r--r-- 2 root root    590105 Dec  1 09:50 input.tar.gz
[2025-12-02 08:01:49] -rw-r--r-- 2 root root     15847 Dec  1 09:50 start_atlas.sh
[2025-12-02 08:01:49] -rw------- 1 root root 915362701 Dec  2 08:00 HITS.pool.root.1
[2025-12-02 08:01:49] -rw------- 1 root root  13475840 Dec  2 08:01 result.tar.gz
08:01:50 (126252): run_atlas exited; CPU time 207468.816367
08:01:50 (126252): called boinc_finish(0)

</stderr_txt>
]]>

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