Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
09:52:35 (171293): wrapper (7.7.26015): starting
09:52:35 (171293): wrapper: running run_atlas (--nthreads 10)
[2025-12-01 09:52:36] Arguments: --nthreads 10
[2025-12-01 09:52:36] Threads: 10
[2025-12-01 09:52:36] Checking for CVMFS
[2025-12-01 09:52:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 09:52:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 09:52:36] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 09:52:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 09:52:37] 2.13.3.0 8606 12 49648 153527 3 90 3828632 4096000 6803 130560 0 474641 99.996 2825 853 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-01 09:52:37] CVMFS is ok
[2025-12-01 09:52:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 09:52:37] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-01 09:52:37] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-01 09:52:37] Further information can be found at the LHC@home message board.
[2025-12-01 09:52:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 09:52:37] Checking for apptainer binary...
[2025-12-01 09:52:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 09:52:37] Running /usr/bin/apptainer --version
[2025-12-01 09:52:37] apptainer version 1.4.2
[2025-12-01 09:52:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 09:52:37] 3950x-linux
[2025-12-01 09:52:37] apptainer works
[2025-12-01 09:52:37] Set ATHENA_PROC_NUMBER=10
[2025-12-01 09:52:37] Set ATHENA_CORE_NUMBER=10
[2025-12-01 09:52:37] Starting ATLAS job with PandaID=6894290984
[2025-12-01 09:52:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc233/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 08:01:41]  *** The last 200 lines of the pilot log: ***
[2025-12-02 08:01:41] 2025-12-02 16:01:09,950 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3238.7688124999995
[2025-12-02 08:01:41] 2025-12-02 16:01:09,954 | INFO     | using path: /var/lib/multiboinc/boinc233/slots/3/PanDA_Pilot-6894290984/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 08:01:41] 2025-12-02 16:01:09,954 | INFO     | extracted standard info from prmon json
[2025-12-02 08:01:41] 2025-12-02 16:01:09,954 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 08:01:41] 2025-12-02 16:01:09,954 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 08:01:41] 2025-12-02 16:01:09,965 | INFO     | fitting pss+swap vs Time
[2025-12-02 08:01:41] 2025-12-02 16:01:09,966 | INFO     | sum of square deviations: 690726337559.1274
[2025-12-02 08:01:41] 2025-12-02 16:01:09,984 | INFO     | sum of deviations: 4078217754295.745
[2025-12-02 08:01:41] 2025-12-02 16:01:09,984 | INFO     | mean x: 1764651448.2695253
[2025-12-02 08:01:41] 2025-12-02 16:01:09,984 | INFO     | mean y: 3144476.3728943337
[2025-12-02 08:01:41] 2025-12-02 16:01:09,985 | INFO     | intersect: -10415790599.865505
[2025-12-02 08:01:41] 2025-12-02 16:01:09,985 | INFO     | chi2: 8.81791924429048
[2025-12-02 08:01:41] 2025-12-02 16:01:09,986 | INFO     | sum of square deviations: 682824436713.1282
[2025-12-02 08:01:41] 2025-12-02 16:01:10,004 | INFO     | sum of deviations: 4570881458477.765
[2025-12-02 08:01:41] 2025-12-02 16:01:10,004 | INFO     | mean x: 1764651295.780169
[2025-12-02 08:01:41] 2025-12-02 16:01:10,004 | INFO     | mean y: 3153980.8977709454
[2025-12-02 08:01:41] 2025-12-02 16:01:10,004 | INFO     | intersect: -11809563102.555222
[2025-12-02 08:01:41] 2025-12-02 16:01:10,005 | INFO     | chi2: 5.414944359498629
[2025-12-02 08:01:41] 2025-12-02 16:01:10,005 | INFO     | current chi2=5.414944359498629 (change=38.5915859571434 %)
[2025-12-02 08:01:41] 2025-12-02 16:01:10,006 | INFO     | sum of square deviations: 674982810926.0698
[2025-12-02 08:01:41] 2025-12-02 16:01:10,026 | INFO     | sum of deviations: 4745108162710.601
[2025-12-02 08:01:41] 2025-12-02 16:01:10,026 | INFO     | mean x: 1764651143.2885802
[2025-12-02 08:01:41] 2025-12-02 16:01:10,026 | INFO     | mean y: 3157366.452932099
[2025-12-02 08:01:41] 2025-12-02 16:01:10,026 | INFO     | intersect: -12402285274.178062
[2025-12-02 08:01:41] 2025-12-02 16:01:10,027 | INFO     | chi2: 4.813202910538166
[2025-12-02 08:01:41] 2025-12-02 16:01:10,027 | INFO     | current chi2=4.813202910538166 (change=11.112606317088334 %)
[2025-12-02 08:01:41] 2025-12-02 16:01:10,027 | INFO     | right removable region: 1295
[2025-12-02 08:01:41] 2025-12-02 16:01:10,028 | INFO     | sum of square deviations: 682822230343.1292
[2025-12-02 08:01:41] 2025-12-02 16:01:10,046 | INFO     | sum of deviations: 3578956799210.3657
[2025-12-02 08:01:41] 2025-12-02 16:01:10,046 | INFO     | mean x: 1764651600.780169
[2025-12-02 08:01:41] 2025-12-02 16:01:10,046 | INFO     | mean y: 3154107.417371253
[2025-12-02 08:01:41] 2025-12-02 16:01:10,046 | INFO     | intersect: -9246122738.293913
[2025-12-02 08:01:41] 2025-12-02 16:01:10,047 | INFO     | chi2: 5.695989490486591
[2025-12-02 08:01:41] 2025-12-02 16:01:10,047 | INFO     | current chi2=5.695989490486591 (change=35.40438132074422 %)
[2025-12-02 08:01:41] 2025-12-02 16:01:10,047 | INFO     | sum of square deviations: 674978952615.6475
[2025-12-02 08:01:41] 2025-12-02 16:01:10,065 | INFO     | sum of deviations: 3291776327500.6226
[2025-12-02 08:01:41] 2025-12-02 16:01:10,065 | INFO     | mean x: 1764651753.2878087
[2025-12-02 08:01:41] 2025-12-02 16:01:10,065 | INFO     | mean y: 3159687.1913580247
[2025-12-02 08:01:41] 2025-12-02 16:01:10,065 | INFO     | intersect: -8602795869.2673
[2025-12-02 08:01:41] 2025-12-02 16:01:10,066 | INFO     | chi2: 4.654301634229613
[2025-12-02 08:01:41] 2025-12-02 16:01:10,066 | INFO     | current chi2=4.654301634229613 (change=18.2880930169692 %)
[2025-12-02 08:01:41] 2025-12-02 16:01:10,066 | INFO     | left removable region: 20
[2025-12-02 08:01:41] 2025-12-02 16:01:10,067 | INFO     | sum of square deviations: 642698456424.9803
[2025-12-02 08:01:41] 2025-12-02 16:01:10,076 | INFO     | monitor loop #5147: job 0:6894290984 is in state 'finished'
[2025-12-02 08:01:41] 2025-12-02 16:01:10,085 | INFO     | sum of deviations: 3725514766104.0557
[2025-12-02 08:01:41] 2025-12-02 16:01:10,085 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 08:01:41] 2025-12-02 16:01:10,085 | INFO     | mean x: 1764651722.8039215
[2025-12-02 08:01:41] 2025-12-02 16:01:10,085 | INFO     | mean y: 3178040.228235294
[2025-12-02 08:01:41] 2025-12-02 16:01:10,085 | INFO     | intersect: -10225936382.896812
[2025-12-02 08:01:41] 2025-12-02 16:01:10,086 | INFO     | chi2: 0.3974116814612771
[2025-12-02 08:01:41] 2025-12-02 16:01:10,086 | INFO     | current memory leak: 5.80 B/s (using 1275 data points, chi2=0.40)
[2025-12-02 08:01:41] 2025-12-02 16:01:10,087 | INFO     | could have reported an average CPU frequency of 3396 MHz (47 samples)
[2025-12-02 08:01:41] 2025-12-02 16:01:10,087 | INFO     | ..............................
[2025-12-02 08:01:41] 2025-12-02 16:01:10,087 | INFO     | . Timing measurements:
[2025-12-02 08:01:41] 2025-12-02 16:01:10,087 | INFO     | . get job = 0 s
[2025-12-02 08:01:41] 2025-12-02 16:01:10,087 | INFO     | . initial setup = 3 s
[2025-12-02 08:01:41] 2025-12-02 16:01:10,087 | INFO     | . payload setup = 15 s
[2025-12-02 08:01:41] 2025-12-02 16:01:10,087 | INFO     | . stage-in = 0 s
[2025-12-02 08:01:41] 2025-12-02 16:01:10,087 | INFO     | . payload execution = 79625 s
[2025-12-02 08:01:41] 2025-12-02 16:01:10,087 | INFO     | . stage-out = 3 s
[2025-12-02 08:01:41] 2025-12-02 16:01:10,087 | INFO     | . log creation = 0 s
[2025-12-02 08:01:41] 2025-12-02 16:01:10,087 | INFO     | ..............................
[2025-12-02 08:01:41] 2025-12-02 16:01:10,385 | INFO     | 
[2025-12-02 08:01:41] 2025-12-02 16:01:10,386 | INFO     | job summary report
[2025-12-02 08:01:41] 2025-12-02 16:01:10,386 | INFO     | --------------------------------------------------
[2025-12-02 08:01:41] 2025-12-02 16:01:10,386 | INFO     | PanDA job id: 6894290984
[2025-12-02 08:01:41] 2025-12-02 16:01:10,386 | INFO     | task id: 47533967
[2025-12-02 08:01:41] 2025-12-02 16:01:10,386 | INFO     | errors: (none)
[2025-12-02 08:01:41] 2025-12-02 16:01:10,386 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 08:01:41] 2025-12-02 16:01:10,386 | INFO     | pilot state: finished 
[2025-12-02 08:01:41] 2025-12-02 16:01:10,386 | INFO     | transexitcode: 0
[2025-12-02 08:01:41] 2025-12-02 16:01:10,386 | INFO     | exeerrorcode: 0
[2025-12-02 08:01:41] 2025-12-02 16:01:10,386 | INFO     | exeerrordiag: 
[2025-12-02 08:01:41] 2025-12-02 16:01:10,386 | INFO     | exitcode: 0
[2025-12-02 08:01:41] 2025-12-02 16:01:10,386 | INFO     | exitmsg: OK
[2025-12-02 08:01:41] 2025-12-02 16:01:10,386 | INFO     | cpuconsumptiontime: 205482 s
[2025-12-02 08:01:41] 2025-12-02 16:01:10,386 | INFO     | nevents: 1000
[2025-12-02 08:01:41] 2025-12-02 16:01:10,386 | INFO     | neventsw: 0
[2025-12-02 08:01:41] 2025-12-02 16:01:10,386 | INFO     | pid: 195142
[2025-12-02 08:01:41] 2025-12-02 16:01:10,386 | INFO     | pgrp: 195142
[2025-12-02 08:01:41] 2025-12-02 16:01:10,386 | INFO     | corecount: 10
[2025-12-02 08:01:41] 2025-12-02 16:01:10,386 | INFO     | event service: False
[2025-12-02 08:01:41] 2025-12-02 16:01:10,386 | INFO     | sizes: {0: 2284101, 1: 2284300, 12: 2284300, 13: 2284590, 23: 2284646, 79644: 2348848, 79649: 2357926, 79653: 2358116}
[2025-12-02 08:01:41] 2025-12-02 16:01:10,386 | INFO     | --------------------------------------------------
[2025-12-02 08:01:41] 2025-12-02 16:01:10,387 | INFO     | 
[2025-12-02 08:01:41] 2025-12-02 16:01:10,387 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc233/slots/3
[2025-12-02 08:01:41] 2025-12-02 16:01:10,401 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 08:01:41] 2025-12-02 16:01:10,402 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 08:01:41] 2025-12-02 16:01:10,402 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 08:01:41] 2025-12-02 16:01:10,402 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 08:01:41] 2025-12-02 16:01:10,402 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 08:01:41] 2025-12-02 16:01:10,402 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 08:01:41] 2025-12-02 16:01:10,402 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 08:01:41] 2025-12-02 16:01:10,402 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 08:01:41] 2025-12-02 16:01:10,402 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 08:01:41] 2025-12-02 16:01:10,402 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 08:01:41] 2025-12-02 16:01:10,402 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 08:01:41] 2025-12-02 16:01:10,402 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 08:01:41] 2025-12-02 16:01:10,402 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 08:01:41] 2025-12-02 16:01:10,402 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 08:01:41] 2025-12-02 16:01:10,402 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 08:01:41] 2025-12-02 16:01:10,402 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 08:01:41] 2025-12-02 16:01:10,402 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 08:01:41] 2025-12-02 16:01:10,402 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 08:01:41] 2025-12-02 16:01:10,402 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 08:01:41] 2025-12-02 16:01:10,402 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 08:01:41] 2025-12-02 16:01:10,403 | INFO     | job 6894290984 has completed (purged errors)
[2025-12-02 08:01:41] 2025-12-02 16:01:10,403 | INFO     | overall cleanup function is called
[2025-12-02 08:01:41] 2025-12-02 16:01:11,417 | INFO     | --- collectZombieJob: --- 10, [195142]
[2025-12-02 08:01:41] 2025-12-02 16:01:11,417 | INFO     | zombie collector waiting for pid 195142
[2025-12-02 08:01:41] 2025-12-02 16:01:11,418 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 08:01:41] 2025-12-02 16:01:11,418 | INFO     | collected zombie processes
[2025-12-02 08:01:41] 2025-12-02 16:01:11,418 | INFO     | will attempt to kill all subprocesses of pid=195142
[2025-12-02 08:01:41] 2025-12-02 16:01:11,550 | INFO     | process IDs to be killed: [195142] (in reverse order)
[2025-12-02 08:01:41] 2025-12-02 16:01:11,600 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 08:01:41] 2025-12-02 16:01:11,601 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 08:01:41] 2025-12-02 16:01:11,604 | INFO     | did not find any defunct processes belonging to 195142
[2025-12-02 08:01:41] 2025-12-02 16:01:11,607 | INFO     | did not find any defunct processes belonging to 195142
[2025-12-02 08:01:41] 2025-12-02 16:01:11,608 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 08:01:41] 2025-12-02 16:01:11,608 | INFO     | ready for new job
[2025-12-02 08:01:41] 2025-12-02 16:01:11,608 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 08:01:41] 2025-12-02 16:01:11,613 | INFO     | ***************************************
[2025-12-02 08:01:41] 2025-12-02 16:01:11,613 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 08:01:41] 2025-12-02 16:01:11,613 | INFO     | ***************************************
[2025-12-02 08:01:41] 2025-12-02 16:01:11,613 | INFO     | 
[2025-12-02 08:01:41] 2025-12-02 16:01:11,614 | INFO     | architecture information:
[2025-12-02 08:01:41] 2025-12-02 16:01:11,614 | INFO     | executing command: cat /etc/os-release
[2025-12-02 08:01:41] 2025-12-02 16:01:11,624 | INFO     | cat /etc/os-release:
[2025-12-02 08:01:41] NAME="CentOS Linux"
[2025-12-02 08:01:41] VERSION="7 (Core)"
[2025-12-02 08:01:41] ID="centos"
[2025-12-02 08:01:41] ID_LIKE="rhel fedora"
[2025-12-02 08:01:41] VERSION_ID="7"
[2025-12-02 08:01:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 08:01:41] ANSI_COLOR="0;31"
[2025-12-02 08:01:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 08:01:41] HOME_URL="https://www.centos.org/"
[2025-12-02 08:01:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 08:01:41] 
[2025-12-02 08:01:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 08:01:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 08:01:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 08:01:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 08:01:41] 
[2025-12-02 08:01:41] 2025-12-02 16:01:11,625 | INFO     | ***************************************
[2025-12-02 08:01:41] 2025-12-02 16:01:12,127 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc233/slots/3
[2025-12-02 08:01:41] 2025-12-02 16:01:12,139 | INFO     | sufficient remaining disk space (59626225664 B)
[2025-12-02 08:01:41] 2025-12-02 16:01:12,139 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 08:01:41] 2025-12-02 16:01:12,139 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 08:01:41] 2025-12-02 16:01:12,139 | INFO     | update_server=False
[2025-12-02 08:01:41] 2025-12-02 16:01:12,139 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 08:01:41] 2025-12-02 16:01:12,139 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 08:01:41] 2025-12-02 16:01:12,139 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 08:01:41] 2025-12-02 16:01:12,588 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-02 08:01:41] 2025-12-02 16:01:12,588 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-02 08:01:41] 2025-12-02 16:01:12,588 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 08:01:41] 2025-12-02 16:01:12,588 | INFO     | will abort loop
[2025-12-02 08:01:41] 2025-12-02 16:01:12,622 | INFO     | all data control threads have been joined
[2025-12-02 08:01:41] 2025-12-02 16:01:13,143 | INFO     | [job] queue monitor thread has finished
[2025-12-02 08:01:41] 2025-12-02 16:01:13,144 | INFO     | [job] retrieve thread has finished
[2025-12-02 08:01:41] 2025-12-02 16:01:13,268 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 08:01:41] 2025-12-02 16:01:13,367 | INFO     | all job control threads have been joined
[2025-12-02 08:01:41] 2025-12-02 16:01:13,396 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 08:01:41] 2025-12-02 16:01:13,501 | INFO     | [data] copytool_in thread has finished
[2025-12-02 08:01:41] 2025-12-02 16:01:13,506 | INFO     | all payload control threads have been joined
[2025-12-02 08:01:41] 2025-12-02 16:01:13,591 | INFO     | [job] job monitor thread has finished
[2025-12-02 08:01:41] 2025-12-02 16:01:13,627 | INFO     | [data] control thread has finished
[2025-12-02 08:01:41] 2025-12-02 16:01:13,647 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 08:01:41] 2025-12-02 16:01:13,775 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 08:01:41] 2025-12-02 16:01:13,821 | INFO     | [job] validate thread has finished
[2025-12-02 08:01:41] 2025-12-02 16:01:14,013 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 08:01:41] 2025-12-02 16:01:14,371 | INFO     | [job] control thread has finished
[2025-12-02 08:01:41] 2025-12-02 16:01:14,494 | INFO     | [payload] validate_post thread has finished
[2025-12-02 08:01:41] 2025-12-02 16:01:14,511 | INFO     | [payload] control thread has finished
[2025-12-02 08:01:41] 2025-12-02 16:01:14,725 | INFO     | [payload] failed_post thread has finished
[2025-12-02 08:01:41] 2025-12-02 16:01:15,273 | INFO     | [data] copytool_out thread has finished
[2025-12-02 08:01:41] 2025-12-02 16:01:15,489 | INFO     | [monitor] cgroup control has ended
[2025-12-02 08:01:41] 2025-12-02 16:01:16,144 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 08:01:41] 2025-12-02 16:01:17,043 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 134524572780352)>', '<ExcThread(monitor, started 134524291745536)>']
[2025-12-02 08:01:41] 2025-12-02 16:01:22,067 | INFO     | all workflow threads have been joined
[2025-12-02 08:01:41] 2025-12-02 16:01:22,068 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 08:01:41] 2025-12-02 16:01:22,068 | INFO     | traces error code: 0
[2025-12-02 08:01:41] 2025-12-02 16:01:22,068 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 08:01:41] 2025-12-02 16:01:41,707 | INFO     | PID=177274 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 08:01:41] 2025-12-02 16:01:41,707 | INFO     | .. there are 6 such processes running
[2025-12-02 08:01:41] 2025-12-02 16:01:41,707 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 08:01:41] 2025-12-02 16:01:41,707 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 08:01:41] 2025-12-02 16:01:41,707 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 08:01:41] 2025-12-02 16:01:41,707 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 08:01:41] 2025-12-02 16:01:41,707 | INFO     | [monitor] control thread has ended
[2025-12-02 08:01:41] 2025-12-02 16:01:41,772 [wrapper] ==== pilot stdout END ====
[2025-12-02 08:01:41] 2025-12-02 16:01:41,774 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 08:01:41] 2025-12-02 16:01:41,776 [wrapper] pilotpid: 177274
[2025-12-02 08:01:41] 2025-12-02 16:01:41,778 [wrapper] Pilot exit status: 0
[2025-12-02 08:01:41] 2025-12-02 16:01:41,784 [wrapper] pandaids: 6894290984
[2025-12-02 08:01:41] 2025-12-02 16:01:41,813 [wrapper] cleanup supervisor_pilot 1463361 177275
[2025-12-02 08:01:41] 2025-12-02 16:01:41,815 [wrapper] Test setup, not cleaning
[2025-12-02 08:01:41] 2025-12-02 16:01:41,817 [wrapper] apfmon messages muted
[2025-12-02 08:01:41] 2025-12-02 16:01:41,819 [wrapper] ==== wrapper stdout END ====
[2025-12-02 08:01:41] 2025-12-02 16:01:41,821 [wrapper] ==== wrapper stderr END ====
[2025-12-02 08:01:41]  *** Error codes and diagnostics ***
[2025-12-02 08:01:41]     "exeErrorCode": 0,
[2025-12-02 08:01:41]     "exeErrorDiag": "",
[2025-12-02 08:01:41]     "pilotErrorCode": 0,
[2025-12-02 08:01:41]     "pilotErrorDiag": "",
[2025-12-02 08:01:41]  *** Listing of results directory ***
[2025-12-02 08:01:41] total 1307548
[2025-12-02 08:01:41] -rw-r--r-- 1 root root    576529 Nov 21 04:04 pilot3.tar.gz
[2025-12-02 08:01:41] -rw-r--r-- 1 root root      5112 Nov 21 04:05 queuedata.json
[2025-12-02 08:01:41] -rwx------ 1 4871 1028     36292 Nov 21 04:08 runpilot2-wrapper.sh
[2025-12-02 08:01:41] -rw-r--r-- 1 root root       100 Dec  1 09:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 08:01:41] -rwxr-xr-x 1 root root      7986 Dec  1 09:52 run_atlas
[2025-12-02 08:01:41] -rw-r--r-- 1 root root       105 Dec  1 09:52 job.xml
[2025-12-02 08:01:41] -rw-r--r-- 2 root root 408029251 Dec  1 09:52 EVNT.47493127._002439.pool.root.1
[2025-12-02 08:01:41] -rw-r--r-- 2 root root    590108 Dec  1 09:52 input.tar.gz
[2025-12-02 08:01:41] -rw-r--r-- 2 root root     15847 Dec  1 09:52 start_atlas.sh
[2025-12-02 08:01:41] drwxrwx--x 2 root root      4096 Dec  1 09:52 shared
[2025-12-02 08:01:41] -rw-r--r-- 1 root root         0 Dec  1 09:52 boinc_setup_complete
[2025-12-02 08:01:41] -rw-r--r-- 1 root root      9234 Dec  1 09:52 init_data.xml
[2025-12-02 08:01:41] -rw-r--r-- 1 root root         0 Dec  1 09:52 boinc_lockfile
[2025-12-02 08:01:41] -rw-r--r-- 1 root root      2782 Dec  1 09:52 pandaJob.out
[2025-12-02 08:01:41] -rw------- 1 root root    991946 Dec  1 09:52 agis_schedconf.cvmfs.json
[2025-12-02 08:01:41] drwxr-xr-x 5  320  320      4096 Dec  1 09:53 pilot3
[2025-12-02 08:01:41] -rw-r--r-- 1 root root       533 Dec  2 07:48 boinc_task_state.xml
[2025-12-02 08:01:41] -rw------- 1 root root 900080994 Dec  2 08:00 HITS.47533967._004101.pool.root.1
[2025-12-02 08:01:41] -rw------- 1 root root      1049 Dec  2 08:00 memory_monitor_summary.json
[2025-12-02 08:01:41] -rw------- 1 root root   1516240 Dec  2 08:01 agis_ddmendpoints.agis.ALL.json
[2025-12-02 08:01:41] -rw------- 1 root root   2617649 Dec  2 08:01 log.47533967._004101.job.log.tgz.1
[2025-12-02 08:01:41] -rw------- 1 root root      8604 Dec  2 08:01 heartbeat.json
[2025-12-02 08:01:41] -rw-r--r-- 1 root root      8192 Dec  2 08:01 boinc_mmap_file
[2025-12-02 08:01:41] -rw-r--r-- 1 root root        29 Dec  2 08:01 wrapper_checkpoint.txt
[2025-12-02 08:01:41] -rw------- 1 root root       821 Dec  2 08:01 pilotlog.txt
[2025-12-02 08:01:41] -rw------- 1 root root        95 Dec  2 08:01 pilot_heartbeat.json
[2025-12-02 08:01:41] -rw------- 1 root root  10830916 Dec  2 08:01 log.47533967._004101.job.log.1
[2025-12-02 08:01:41] -rw------- 1 root root       353 Dec  2 08:01 output.list
[2025-12-02 08:01:41] -rw-r--r-- 1 root root       620 Dec  2 08:01 runtime_log
[2025-12-02 08:01:41] -rw------- 1 root root  13465600 Dec  2 08:01 result.tar.gz
[2025-12-02 08:01:41] -rw-r--r-- 1 root root      9021 Dec  2 08:01 runtime_log.err
[2025-12-02 08:01:41] -rw------- 1 root root       660 Dec  2 08:01 6J8NDmt6eg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAbHKDm5MxPem.diag
[2025-12-02 08:01:41] -rw-r--r-- 1 root root     21435 Dec  2 08:01 stderr.txt
[2025-12-02 08:01:41] HITS file was successfully produced:
[2025-12-02 08:01:41] -rw------- 1 root root 900080994 Dec  2 08:00 shared/HITS.pool.root.1
[2025-12-02 08:01:41]  *** Contents of shared directory: ***
[2025-12-02 08:01:41] total 1291212
[2025-12-02 08:01:41] -rw-r--r-- 2 root root 408029251 Dec  1 09:52 ATLAS.root_0
[2025-12-02 08:01:41] -rw-r--r-- 2 root root    590108 Dec  1 09:52 input.tar.gz
[2025-12-02 08:01:41] -rw-r--r-- 2 root root     15847 Dec  1 09:52 start_atlas.sh
[2025-12-02 08:01:41] -rw------- 1 root root 900080994 Dec  2 08:00 HITS.pool.root.1
[2025-12-02 08:01:41] -rw------- 1 root root  13465600 Dec  2 08:01 result.tar.gz
08:01:43 (171293): run_atlas exited; CPU time 206230.341632
08:01:43 (171293): called boinc_finish(0)

</stderr_txt>
]]>

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