Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
08:01:50 (1480005): wrapper (7.7.26015): starting
08:01:50 (1480005): wrapper: running run_atlas (--nthreads 10)
[2025-12-02 08:01:50] Arguments: --nthreads 10
[2025-12-02 08:01:50] Threads: 10
[2025-12-02 08:01:50] Checking for CVMFS
[2025-12-02 08:01:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 08:01:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 08:01:50] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 08:01:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 08:01:50] 2.13.3.0 8606 1341 54324 153560 0 81 4068508 4096001 1392 130560 0 4336014 99.998 47408 1047 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-02 08:01:50] CVMFS is ok
[2025-12-02 08:01:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 08:01:50] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-02 08:01:50] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-02 08:01:50] Further information can be found at the LHC@home message board.
[2025-12-02 08:01:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 08:01:50] Checking for apptainer binary...
[2025-12-02 08:01:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-02 08:01:50] Running /usr/bin/apptainer --version
[2025-12-02 08:01:50] apptainer version 1.4.2
[2025-12-02 08:01:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 08:01:51] 3950x-linux
[2025-12-02 08:01:51] apptainer works
[2025-12-02 08:01:51] Set ATHENA_PROC_NUMBER=10
[2025-12-02 08:01:51] Set ATHENA_CORE_NUMBER=10
[2025-12-02 08:01:51] Starting ATLAS job with PandaID=6893857868
[2025-12-02 08:01:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc233/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 02:19:15]  *** The last 200 lines of the pilot log: ***
[2025-12-03 02:19:15] 2025-12-03 10:18:29,106 | INFO     | time since job start (65789s) is within the limit (172800.0s)
[2025-12-03 02:19:15] 2025-12-03 10:18:29,106 | INFO     | 65792s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-03 02:19:15] 2025-12-03 10:18:31,111 | INFO     | time since job start (65791s) is within the limit (172800.0s)
[2025-12-03 02:19:15] 2025-12-03 10:18:31,129 | INFO     | monitor loop #4329: job 0:6893857868 is in state 'finished'
[2025-12-03 02:19:15] 2025-12-03 10:18:31,129 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:19:15] 2025-12-03 10:18:33,116 | INFO     | time since job start (65793s) is within the limit (172800.0s)
[2025-12-03 02:19:15] 2025-12-03 10:18:33,631 | INFO     | monitor loop #4330: job 0:6893857868 is in state 'finished'
[2025-12-03 02:19:15] 2025-12-03 10:18:33,632 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:19:15] 2025-12-03 10:18:35,121 | INFO     | time since job start (65795s) is within the limit (172800.0s)
[2025-12-03 02:19:15] 2025-12-03 10:18:36,135 | INFO     | monitor loop #4331: job 0:6893857868 is in state 'finished'
[2025-12-03 02:19:15] 2025-12-03 10:18:36,136 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:19:15] 2025-12-03 10:18:37,132 | INFO     | time since job start (65797s) is within the limit (172800.0s)
[2025-12-03 02:19:15] 2025-12-03 10:18:38,638 | INFO     | monitor loop #4332: job 0:6893857868 is in state 'finished'
[2025-12-03 02:19:15] 2025-12-03 10:18:38,639 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 02:19:15] 2025-12-03 10:18:38,950 | INFO     | PID=1483844 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 02:19:15] 2025-12-03 10:18:38,951 | INFO     | .. there are 12 such processes running
[2025-12-03 02:19:15] 2025-12-03 10:18:39,957 | INFO     | time since job start (65799s) is within the limit (172800.0s)
[2025-12-03 02:19:15] 2025-12-03 10:18:40,187 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-03 02:19:15] 2025-12-03 10:18:40,197 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3400.1249687499994
[2025-12-03 02:19:15] 2025-12-03 10:18:40,218 | INFO     | using path: /var/lib/multiboinc/boinc233/slots/3/PanDA_Pilot-6893857868/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 02:19:15] 2025-12-03 10:18:40,219 | INFO     | extracted standard info from prmon json
[2025-12-03 02:19:15] 2025-12-03 10:18:40,219 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 02:19:15] 2025-12-03 10:18:40,219 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 02:19:15] 2025-12-03 10:18:40,272 | INFO     | fitting pss+swap vs Time
[2025-12-03 02:19:15] 2025-12-03 10:18:40,274 | INFO     | sum of square deviations: 388463601172.50934
[2025-12-03 02:19:15] 2025-12-03 10:18:40,329 | INFO     | sum of deviations: 12007547272231.756
[2025-12-03 02:19:15] 2025-12-03 10:18:40,329 | INFO     | mean x: 1764724192.796846
[2025-12-03 02:19:15] 2025-12-03 10:18:40,329 | INFO     | mean y: 3674249.5788497217
[2025-12-03 02:19:15] 2025-12-03 10:18:40,329 | INFO     | intersect: -54544574552.88507
[2025-12-03 02:19:15] 2025-12-03 10:18:40,330 | INFO     | chi2: 29.370266069922888
[2025-12-03 02:19:15] 2025-12-03 10:18:40,331 | INFO     | sum of square deviations: 383084574910.41113
[2025-12-03 02:19:15] 2025-12-03 10:18:40,378 | INFO     | sum of deviations: 12507030479409.898
[2025-12-03 02:19:15] 2025-12-03 10:18:40,378 | INFO     | mean x: 1764724040.3122087
[2025-12-03 02:19:15] 2025-12-03 10:18:40,378 | INFO     | mean y: 3688407.4659832246
[2025-12-03 02:19:15] 2025-12-03 10:18:40,378 | INFO     | intersect: -57611414902.53768
[2025-12-03 02:19:15] 2025-12-03 10:18:40,379 | INFO     | chi2: 25.218211839665102
[2025-12-03 02:19:15] 2025-12-03 10:18:40,379 | INFO     | current chi2=25.218211839665102 (change=14.136930936794498 %)
[2025-12-03 02:19:15] 2025-12-03 10:18:40,379 | INFO     | right removable region: 1072
[2025-12-03 02:19:15] 2025-12-03 10:18:40,387 | INFO     | sum of square deviations: 383082406970.4107
[2025-12-03 02:19:15] 2025-12-03 10:18:40,451 | INFO     | sum of deviations: 11629251473821.076
[2025-12-03 02:19:15] 2025-12-03 10:18:40,451 | INFO     | mean x: 1764724345.3122087
[2025-12-03 02:19:15] 2025-12-03 10:18:40,451 | INFO     | mean y: 3684959.605778192
[2025-12-03 02:19:15] 2025-12-03 10:18:40,458 | INFO     | intersect: -53568138805.183
[2025-12-03 02:19:15] 2025-12-03 10:18:40,459 | INFO     | chi2: 27.48818643424839
[2025-12-03 02:19:15] 2025-12-03 10:18:40,459 | INFO     | current chi2=27.48818643424839 (change=6.408112310572059 %)
[2025-12-03 02:19:15] 2025-12-03 10:18:40,459 | INFO     | left removable region: 10
[2025-12-03 02:19:15] 2025-12-03 10:18:40,460 | INFO     | sum of square deviations: 371422055119.42377
[2025-12-03 02:19:15] 2025-12-03 10:18:40,524 | INFO     | sum of deviations: 12068605797243.305
[2025-12-03 02:19:15] 2025-12-03 10:18:40,531 | INFO     | mean x: 1764724314.8418078
[2025-12-03 02:19:15] 2025-12-03 10:18:40,531 | INFO     | mean y: 3706556.1327683614
[2025-12-03 02:19:15] 2025-12-03 10:18:40,531 | INFO     | intersect: -57337428153.24297
[2025-12-03 02:19:15] 2025-12-03 10:18:40,532 | INFO     | chi2: 22.516817838637287
[2025-12-03 02:19:15] 2025-12-03 10:18:40,532 | INFO     | current memory leak: 32.49 B/s (using 1062 data points, chi2=22.52)
[2025-12-03 02:19:15] 2025-12-03 10:18:40,533 | INFO     | could have reported an average CPU frequency of 3357 MHz (40 samples)
[2025-12-03 02:19:15] 2025-12-03 10:18:40,533 | INFO     | ..............................
[2025-12-03 02:19:15] 2025-12-03 10:18:40,533 | INFO     | . Timing measurements:
[2025-12-03 02:19:15] 2025-12-03 10:18:40,533 | INFO     | . get job = 0 s
[2025-12-03 02:19:15] 2025-12-03 10:18:40,533 | INFO     | . initial setup = 3 s
[2025-12-03 02:19:15] 2025-12-03 10:18:40,533 | INFO     | . payload setup = 3 s
[2025-12-03 02:19:15] 2025-12-03 10:18:40,533 | INFO     | . stage-in = 0 s
[2025-12-03 02:19:15] 2025-12-03 10:18:40,540 | INFO     | . payload execution = 65750 s
[2025-12-03 02:19:15] 2025-12-03 10:18:40,540 | INFO     | . stage-out = 7 s
[2025-12-03 02:19:15] 2025-12-03 10:18:40,540 | INFO     | . log creation = 2 s
[2025-12-03 02:19:15] 2025-12-03 10:18:40,540 | INFO     | ..............................
[2025-12-03 02:19:15] 2025-12-03 10:18:40,811 | INFO     | 
[2025-12-03 02:19:15] 2025-12-03 10:18:40,811 | INFO     | job summary report
[2025-12-03 02:19:15] 2025-12-03 10:18:40,811 | INFO     | --------------------------------------------------
[2025-12-03 02:19:15] 2025-12-03 10:18:40,811 | INFO     | PanDA job id: 6893857868
[2025-12-03 02:19:15] 2025-12-03 10:18:40,811 | INFO     | task id: 47523449
[2025-12-03 02:19:15] 2025-12-03 10:18:40,811 | INFO     | errors: (none)
[2025-12-03 02:19:15] 2025-12-03 10:18:40,811 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 02:19:15] 2025-12-03 10:18:40,811 | INFO     | pilot state: finished 
[2025-12-03 02:19:15] 2025-12-03 10:18:40,812 | INFO     | transexitcode: 0
[2025-12-03 02:19:15] 2025-12-03 10:18:40,812 | INFO     | exeerrorcode: 0
[2025-12-03 02:19:15] 2025-12-03 10:18:40,812 | INFO     | exeerrordiag: 
[2025-12-03 02:19:15] 2025-12-03 10:18:40,812 | INFO     | exitcode: 0
[2025-12-03 02:19:15] 2025-12-03 10:18:40,812 | INFO     | exitmsg: OK
[2025-12-03 02:19:15] 2025-12-03 10:18:40,812 | INFO     | cpuconsumptiontime: 204363 s
[2025-12-03 02:19:15] 2025-12-03 10:18:40,812 | INFO     | nevents: 1000
[2025-12-03 02:19:15] 2025-12-03 10:18:40,812 | INFO     | neventsw: 0
[2025-12-03 02:19:15] 2025-12-03 10:18:40,812 | INFO     | pid: 1498168
[2025-12-03 02:19:15] 2025-12-03 10:18:40,812 | INFO     | pgrp: 1498168
[2025-12-03 02:19:15] 2025-12-03 10:18:40,812 | INFO     | corecount: 10
[2025-12-03 02:19:15] 2025-12-03 10:18:40,812 | INFO     | event service: False
[2025-12-03 02:19:15] 2025-12-03 10:18:40,812 | INFO     | sizes: {0: 2284323, 3: 2284585, 11: 2284613, 65758: 2341436, 65766: 2350458, 65767: 2350514, 65787: 2350888}
[2025-12-03 02:19:15] 2025-12-03 10:18:40,812 | INFO     | --------------------------------------------------
[2025-12-03 02:19:15] 2025-12-03 10:18:40,812 | INFO     | 
[2025-12-03 02:19:15] 2025-12-03 10:18:40,812 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc233/slots/3
[2025-12-03 02:19:15] 2025-12-03 10:18:40,887 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 02:19:15] 2025-12-03 10:18:40,887 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 02:19:15] 2025-12-03 10:18:40,887 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 02:19:15] 2025-12-03 10:18:40,887 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 02:19:15] 2025-12-03 10:18:40,887 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 02:19:15] 2025-12-03 10:18:40,887 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 02:19:15] 2025-12-03 10:18:40,888 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 02:19:15] 2025-12-03 10:18:40,888 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 02:19:15] 2025-12-03 10:18:40,888 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 02:19:15] 2025-12-03 10:18:40,888 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 02:19:15] 2025-12-03 10:18:40,888 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 02:19:15] 2025-12-03 10:18:40,888 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 02:19:15] 2025-12-03 10:18:40,888 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 02:19:15] 2025-12-03 10:18:40,888 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 02:19:15] 2025-12-03 10:18:40,888 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 02:19:15] 2025-12-03 10:18:40,888 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 02:19:15] 2025-12-03 10:18:40,888 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 02:19:15] 2025-12-03 10:18:40,888 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 02:19:15] 2025-12-03 10:18:40,888 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 02:19:15] 2025-12-03 10:18:40,888 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 02:19:15] 2025-12-03 10:18:40,889 | INFO     | job 6893857868 has completed (purged errors)
[2025-12-03 02:19:15] 2025-12-03 10:18:40,889 | INFO     | overall cleanup function is called
[2025-12-03 02:19:15] 2025-12-03 10:18:41,954 | INFO     | --- collectZombieJob: --- 10, [1498168]
[2025-12-03 02:19:15] 2025-12-03 10:18:41,955 | INFO     | zombie collector waiting for pid 1498168
[2025-12-03 02:19:15] 2025-12-03 10:18:41,955 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 02:19:15] 2025-12-03 10:18:41,955 | INFO     | collected zombie processes
[2025-12-03 02:19:15] 2025-12-03 10:18:41,955 | INFO     | will attempt to kill all subprocesses of pid=1498168
[2025-12-03 02:19:15] 2025-12-03 10:18:42,722 | INFO     | process IDs to be killed: [1498168] (in reverse order)
[2025-12-03 02:19:15] 2025-12-03 10:18:42,969 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 02:19:15] 2025-12-03 10:18:42,969 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 02:19:15] 2025-12-03 10:18:42,989 | INFO     | did not find any defunct processes belonging to 1498168
[2025-12-03 02:19:15] 2025-12-03 10:18:43,018 | INFO     | did not find any defunct processes belonging to 1498168
[2025-12-03 02:19:15] 2025-12-03 10:18:43,019 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 02:19:15] 2025-12-03 10:18:43,019 | INFO     | ready for new job
[2025-12-03 02:19:15] 2025-12-03 10:18:43,019 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 02:19:15] 2025-12-03 10:18:43,026 | INFO     | ***************************************
[2025-12-03 02:19:15] 2025-12-03 10:18:43,032 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 02:19:15] 2025-12-03 10:18:43,033 | INFO     | ***************************************
[2025-12-03 02:19:15] 2025-12-03 10:18:43,033 | INFO     | 
[2025-12-03 02:19:15] 2025-12-03 10:18:43,034 | INFO     | architecture information:
[2025-12-03 02:19:15] 2025-12-03 10:18:43,044 | INFO     | executing command: cat /etc/os-release
[2025-12-03 02:19:15] 2025-12-03 10:18:43,088 | INFO     | cat /etc/os-release:
[2025-12-03 02:19:15] NAME="CentOS Linux"
[2025-12-03 02:19:15] VERSION="7 (Core)"
[2025-12-03 02:19:15] ID="centos"
[2025-12-03 02:19:15] ID_LIKE="rhel fedora"
[2025-12-03 02:19:15] VERSION_ID="7"
[2025-12-03 02:19:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 02:19:15] ANSI_COLOR="0;31"
[2025-12-03 02:19:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 02:19:15] HOME_URL="https://www.centos.org/"
[2025-12-03 02:19:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 02:19:15] 
[2025-12-03 02:19:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 02:19:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 02:19:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 02:19:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 02:19:15] 
[2025-12-03 02:19:15] 2025-12-03 10:18:43,089 | INFO     | ***************************************
[2025-12-03 02:19:15] 2025-12-03 10:18:43,596 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc233/slots/3
[2025-12-03 02:19:15] 2025-12-03 10:18:43,662 | INFO     | sufficient remaining disk space (44485836800 B)
[2025-12-03 02:19:15] 2025-12-03 10:18:43,662 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 02:19:15] 2025-12-03 10:18:43,663 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 02:19:15] 2025-12-03 10:18:43,663 | INFO     | update_server=False
[2025-12-03 02:19:15] 2025-12-03 10:18:43,663 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 02:19:15] 2025-12-03 10:18:43,663 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 02:19:15] 2025-12-03 10:18:43,788 | INFO     | all payload control threads have been joined
[2025-12-03 02:19:15] 2025-12-03 10:18:44,305 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 02:19:15] 2025-12-03 10:18:44,660 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 02:19:15] 2025-12-03 10:18:44,661 | INFO     | aborting loop
[2025-12-03 02:19:15] 2025-12-03 10:18:44,667 | INFO     | all data control threads have been joined
[2025-12-03 02:19:15] 2025-12-03 10:18:44,671 | INFO     | [job] retrieve thread has finished
[2025-12-03 02:19:15] 2025-12-03 10:18:44,794 | INFO     | [payload] control thread has finished
[2025-12-03 02:19:15] 2025-12-03 10:18:44,816 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 02:19:15] 2025-12-03 10:18:44,859 | INFO     | [payload] failed_post thread has finished
[2025-12-03 02:19:15] 2025-12-03 10:18:44,863 | INFO     | all job control threads have been joined
[2025-12-03 02:19:15] 2025-12-03 10:18:45,198 | INFO     | [payload] validate_post thread has finished
[2025-12-03 02:19:15] 2025-12-03 10:18:45,248 | INFO     | [job] validate thread has finished
[2025-12-03 02:19:15] 2025-12-03 10:18:45,252 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 02:19:15] 2025-12-03 10:18:45,259 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 02:19:15] 2025-12-03 10:18:45,666 | INFO     | [job] job monitor thread has finished
[2025-12-03 02:19:15] 2025-12-03 10:18:45,667 | INFO     | [data] copytool_out thread has finished
[2025-12-03 02:19:15] 2025-12-03 10:18:45,673 | INFO     | [data] control thread has finished
[2025-12-03 02:19:15] 2025-12-03 10:18:45,688 | INFO     | [data] copytool_in thread has finished
[2025-12-03 02:19:15] 2025-12-03 10:18:45,831 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 02:19:15] 2025-12-03 10:18:45,869 | INFO     | [job] control thread has finished
[2025-12-03 02:19:15] 2025-12-03 10:18:46,155 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 02:19:15] 2025-12-03 10:18:46,837 | INFO     | [job] queue monitor thread has finished
[2025-12-03 02:19:15] 2025-12-03 10:18:48,311 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 02:19:15] 2025-12-03 10:18:49,911 | INFO     | [monitor] cgroup control has ended
[2025-12-03 02:19:15] 2025-12-03 10:18:51,355 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 133552512026432)>', '<ExcThread(monitor, started 133551664129792)>']
[2025-12-03 02:19:15] 2025-12-03 10:18:56,379 | INFO     | all workflow threads have been joined
[2025-12-03 02:19:15] 2025-12-03 10:18:56,380 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 02:19:15] 2025-12-03 10:18:56,394 | INFO     | traces error code: 0
[2025-12-03 02:19:15] 2025-12-03 10:18:56,394 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 02:19:15] 2025-12-03 10:19:13,975 | INFO     | PID=1483844 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 02:19:15] 2025-12-03 10:19:13,975 | INFO     | .. there are 12 such processes running
[2025-12-03 02:19:15] 2025-12-03 10:19:13,975 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 02:19:15] 2025-12-03 10:19:13,975 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 02:19:15] 2025-12-03 10:19:13,976 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 02:19:15] 2025-12-03 10:19:13,976 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 02:19:15] 2025-12-03 10:19:13,976 | INFO     | [monitor] control thread has ended
[2025-12-03 02:19:15] 2025-12-03 10:19:14,679 [wrapper] ==== pilot stdout END ====
[2025-12-03 02:19:15] 2025-12-03 10:19:14,696 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 02:19:15] 2025-12-03 10:19:14,706 [wrapper] pilotpid: 1483844
[2025-12-03 02:19:15] 2025-12-03 10:19:14,731 [wrapper] Pilot exit status: 0
[2025-12-03 02:19:15] 2025-12-03 10:19:14,788 [wrapper] pandaids: 6893857868
[2025-12-03 02:19:15] 2025-12-03 10:19:15,035 [wrapper] cleanup supervisor_pilot 2680191 1483845
[2025-12-03 02:19:15] 2025-12-03 10:19:15,047 [wrapper] Test setup, not cleaning
[2025-12-03 02:19:15] 2025-12-03 10:19:15,061 [wrapper] apfmon messages muted
[2025-12-03 02:19:15] 2025-12-03 10:19:15,074 [wrapper] ==== wrapper stdout END ====
[2025-12-03 02:19:15] 2025-12-03 10:19:15,088 [wrapper] ==== wrapper stderr END ====
[2025-12-03 02:19:15]  *** Error codes and diagnostics ***
[2025-12-03 02:19:15]     "exeErrorCode": 0,
[2025-12-03 02:19:15]     "exeErrorDiag": "",
[2025-12-03 02:19:15]     "pilotErrorCode": 0,
[2025-12-03 02:19:15]     "pilotErrorDiag": "",
[2025-12-03 02:19:15]  *** Listing of results directory ***
[2025-12-03 02:19:15] total 1316928
[2025-12-03 02:19:15] -rw-r--r-- 1 root root    576529 Nov 20 05:01 pilot3.tar.gz
[2025-12-03 02:19:15] -rw-r--r-- 1 root root      5112 Nov 20 05:08 queuedata.json
[2025-12-03 02:19:15] -rwx------ 1 4871 1028     36292 Nov 20 05:09 runpilot2-wrapper.sh
[2025-12-03 02:19:15] -rw-r--r-- 1 root root       100 Dec  2 08:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 02:19:15] -rwxr-xr-x 1 root root      7986 Dec  2 08:01 run_atlas
[2025-12-03 02:19:15] -rw-r--r-- 1 root root       105 Dec  2 08:01 job.xml
[2025-12-03 02:19:15] -rw-r--r-- 2 root root 409681657 Dec  2 08:01 EVNT.47493127._000501.pool.root.1
[2025-12-03 02:19:15] drwxrwx--x 2 root root      4096 Dec  2 08:01 shared
[2025-12-03 02:19:15] -rw-r--r-- 2 root root    590100 Dec  2 08:01 input.tar.gz
[2025-12-03 02:19:15] -rw-r--r-- 2 root root     15847 Dec  2 08:01 start_atlas.sh
[2025-12-03 02:19:15] -rw-r--r-- 1 root root         0 Dec  2 08:01 boinc_setup_complete
[2025-12-03 02:19:15] -rw-r--r-- 1 root root      9234 Dec  2 08:01 init_data.xml
[2025-12-03 02:19:15] -rw-r--r-- 1 root root         0 Dec  2 08:01 boinc_lockfile
[2025-12-03 02:19:15] -rw-r--r-- 1 root root      2783 Dec  2 08:01 pandaJob.out
[2025-12-03 02:19:15] -rw------- 1 root root    989202 Dec  2 08:01 agis_schedconf.cvmfs.json
[2025-12-03 02:19:15] drwxr-xr-x 5  320  320      4096 Dec  2 08:02 pilot3
[2025-12-03 02:19:15] -rw-r--r-- 1 root root       533 Dec  3 01:43 boinc_task_state.xml
[2025-12-03 02:19:15] -rw------- 1 root root 912037257 Dec  3 02:16 HITS.47523449._005001.pool.root.1
[2025-12-03 02:19:15] -rw------- 1 root root      1065 Dec  3 02:18 memory_monitor_summary.json
[2025-12-03 02:19:15] -rw------- 1 root root   1516240 Dec  3 02:18 agis_ddmendpoints.agis.ALL.json
[2025-12-03 02:19:15] -rw------- 1 root root   2439783 Dec  3 02:18 log.47523449._005001.job.log.tgz.1
[2025-12-03 02:19:15] -rw------- 1 root root      8624 Dec  3 02:18 heartbeat.json
[2025-12-03 02:19:15] -rw-r--r-- 1 root root        29 Dec  3 02:19 wrapper_checkpoint.txt
[2025-12-03 02:19:15] -rw-r--r-- 1 root root      8192 Dec  3 02:19 boinc_mmap_file
[2025-12-03 02:19:15] -rw------- 1 root root       823 Dec  3 02:19 pilotlog.txt
[2025-12-03 02:19:15] -rw------- 1 root root        95 Dec  3 02:19 pilot_heartbeat.json
[2025-12-03 02:19:15] -rw------- 1 root root   9011329 Dec  3 02:19 log.47523449._005001.job.log.1
[2025-12-03 02:19:15] -rw------- 1 root root       353 Dec  3 02:19 output.list
[2025-12-03 02:19:15] -rw-r--r-- 1 root root       620 Dec  3 02:19 runtime_log
[2025-12-03 02:19:15] -rw------- 1 root root  11468800 Dec  3 02:19 result.tar.gz
[2025-12-03 02:19:15] -rw------- 1 root root       663 Dec  3 02:19 WniMDmPaJg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm0gGKDmzUNUHo.diag
[2025-12-03 02:19:15] -rw-r--r-- 1 root root      9021 Dec  3 02:19 runtime_log.err
[2025-12-03 02:19:15] -rw-r--r-- 1 root root     21953 Dec  3 02:19 stderr.txt
[2025-12-03 02:19:15] HITS file was successfully produced:
[2025-12-03 02:19:15] -rw------- 1 root root 912037257 Dec  3 02:16 shared/HITS.pool.root.1
[2025-12-03 02:19:15]  *** Contents of shared directory: ***
[2025-12-03 02:19:15] total 1302548
[2025-12-03 02:19:15] -rw-r--r-- 2 root root 409681657 Dec  2 08:01 ATLAS.root_0
[2025-12-03 02:19:15] -rw-r--r-- 2 root root    590100 Dec  2 08:01 input.tar.gz
[2025-12-03 02:19:15] -rw-r--r-- 2 root root     15847 Dec  2 08:01 start_atlas.sh
[2025-12-03 02:19:15] -rw------- 1 root root 912037257 Dec  3 02:16 HITS.pool.root.1
[2025-12-03 02:19:15] -rw------- 1 root root  11468800 Dec  3 02:19 result.tar.gz
02:19:16 (1480005): run_atlas exited; CPU time 204422.273486
02:19:16 (1480005): called boinc_finish(0)

</stderr_txt>
]]>

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