Stderr output

<core_client_version>7.23.1</core_client_version>
<![CDATA[
<stderr_txt>
02:28:45 (1768000): wrapper (7.7.26015): starting
02:28:45 (1768000): wrapper: running run_atlas (--nthreads 10)
[2025-12-02 02:28:45] Arguments: --nthreads 10
[2025-12-02 02:28:45] Threads: 10
[2025-12-02 02:28:45] Checking for CVMFS
[2025-12-02 02:28:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 02:28:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 02:28:45] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 02:28:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 02:28:45] 2.13.3.0 4125 1129 62952 153552 0 110 2083492 4096001 11675 130560 0 172490040 99.999 268602 736 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2025-12-02 02:28:45] CVMFS is ok
[2025-12-02 02:28:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 02:28:45] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-02 02:28:45] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-02 02:28:45] Further information can be found at the LHC@home message board.
[2025-12-02 02:28:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 02:28:45] Checking for apptainer binary...
[2025-12-02 02:28:45] apptainer is not installed, using version from CVMFS
[2025-12-02 02:28:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 02:28:46] 7950x-linux
[2025-12-02 02:28:46] apptainer works
[2025-12-02 02:28:46] Set ATHENA_PROC_NUMBER=10
[2025-12-02 02:28:46] Set ATHENA_CORE_NUMBER=10
[2025-12-02 02:28:46] Starting ATLAS job with PandaID=6895234485
[2025-12-02 02:28:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc522/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 17:27:34]  *** The last 200 lines of the pilot log: ***
[2025-12-02 17:27:34] 2025-12-03 01:26:44,378 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4000.126468750001
[2025-12-02 17:27:34] 2025-12-03 01:26:44,382 | INFO     | monitor loop #3905: job 0:6895234485 is in state 'finished'
[2025-12-02 17:27:34] 2025-12-03 01:26:44,382 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 17:27:34] 2025-12-03 01:26:44,388 | INFO     | using path: /var/lib/multiboinc/boinc522/slots/3/PanDA_Pilot-6895234485/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 17:27:34] 2025-12-03 01:26:44,388 | INFO     | extracted standard info from prmon json
[2025-12-02 17:27:34] 2025-12-03 01:26:44,388 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 17:27:34] 2025-12-03 01:26:44,389 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 17:27:34] 2025-12-03 01:26:44,398 | INFO     | fitting pss+swap vs Time
[2025-12-02 17:27:34] 2025-12-03 01:26:44,403 | INFO     | sum of square deviations: 213481368282.0
[2025-12-02 17:27:34] 2025-12-03 01:26:44,416 | INFO     | sum of deviations: 1829850003806.0002
[2025-12-02 17:27:34] 2025-12-03 01:26:44,416 | INFO     | mean x: 1764698271.0
[2025-12-02 17:27:34] 2025-12-03 01:26:44,416 | INFO     | mean y: 3715296.648924122
[2025-12-02 17:27:34] 2025-12-03 01:26:44,416 | INFO     | intersect: -15122350101.434162
[2025-12-02 17:27:34] 2025-12-03 01:26:44,417 | INFO     | chi2: 4.715248057195187
[2025-12-02 17:27:34] 2025-12-03 01:26:44,417 | INFO     | sum of square deviations: 209875337879.5
[2025-12-02 17:27:34] 2025-12-03 01:26:44,430 | INFO     | sum of deviations: 2132154525588.5
[2025-12-02 17:27:34] 2025-12-03 01:26:44,430 | INFO     | mean x: 1764698118.5
[2025-12-02 17:27:34] 2025-12-03 01:26:44,430 | INFO     | mean y: 3728066.8097949885
[2025-12-02 17:27:34] 2025-12-03 01:26:44,430 | INFO     | intersect: -17924100508.349377
[2025-12-02 17:27:34] 2025-12-03 01:26:44,430 | INFO     | chi2: 2.3950752605092247
[2025-12-02 17:27:34] 2025-12-03 01:26:44,431 | INFO     | current chi2=2.3950752605092247 (change=49.205742063676105 %)
[2025-12-02 17:27:34] 2025-12-03 01:26:44,431 | INFO     | sum of square deviations: 206310145452.0
[2025-12-02 17:27:34] 2025-12-03 01:26:44,439 | INFO     | sum of deviations: 2144727384947.0
[2025-12-02 17:27:34] 2025-12-03 01:26:44,439 | INFO     | mean x: 1764697966.0
[2025-12-02 17:27:34] 2025-12-03 01:26:44,439 | INFO     | mean y: 3728599.3069873997
[2025-12-02 17:27:34] 2025-12-03 01:26:44,440 | INFO     | intersect: -18341448006.276077
[2025-12-02 17:27:34] 2025-12-03 01:26:44,440 | INFO     | chi2: 2.3263538007299296
[2025-12-02 17:27:34] 2025-12-03 01:26:44,440 | INFO     | current chi2=2.3263538007299296 (change=2.8692818514890432 %)
[2025-12-02 17:27:34] 2025-12-03 01:26:44,440 | INFO     | right removable region: 872
[2025-12-02 17:27:34] 2025-12-03 01:26:44,441 | INFO     | sum of square deviations: 209875337879.5
[2025-12-02 17:27:34] 2025-12-03 01:26:44,457 | INFO     | sum of deviations: 1538918832929.0027
[2025-12-02 17:27:34] 2025-12-03 01:26:44,457 | INFO     | mean x: 1764698423.5
[2025-12-02 17:27:34] 2025-12-03 01:26:44,457 | INFO     | mean y: 3727578.979498861
[2025-12-02 17:27:34] 2025-12-03 01:26:44,457 | INFO     | intersect: -12935990187.7812
[2025-12-02 17:27:34] 2025-12-03 01:26:44,458 | INFO     | chi2: 2.5754966362662133
[2025-12-02 17:27:34] 2025-12-03 01:26:44,458 | INFO     | current chi2=2.5754966362662133 (change=45.379403055239926 %)
[2025-12-02 17:27:34] 2025-12-03 01:26:44,458 | INFO     | sum of square deviations: 206310145452.0
[2025-12-02 17:27:34] 2025-12-03 01:26:44,473 | INFO     | sum of deviations: 1465502376624.9995
[2025-12-02 17:27:34] 2025-12-03 01:26:44,473 | INFO     | mean x: 1764698576.0
[2025-12-02 17:27:34] 2025-12-03 01:26:44,473 | INFO     | mean y: 3730718.2668957617
[2025-12-02 17:27:34] 2025-12-03 01:26:44,473 | INFO     | intersect: -12531619647.023062
[2025-12-02 17:27:34] 2025-12-03 01:26:44,474 | INFO     | chi2: 2.5291286055719215
[2025-12-02 17:27:34] 2025-12-03 01:26:44,474 | INFO     | current chi2=2.5291286055719215 (change=1.8003529898417217 %)
[2025-12-02 17:27:34] 2025-12-03 01:26:44,474 | INFO     | left removable region: 20
[2025-12-02 17:27:34] 2025-12-03 01:26:44,474 | INFO     | sum of square deviations: 191777039473.0
[2025-12-02 17:27:34] 2025-12-03 01:26:44,483 | INFO     | sum of deviations: 1681580593810.4995
[2025-12-02 17:27:34] 2025-12-03 01:26:44,483 | INFO     | mean x: 1764698545.5
[2025-12-02 17:27:34] 2025-12-03 01:26:44,483 | INFO     | mean y: 3748376.693661972
[2025-12-02 17:27:34] 2025-12-03 01:26:44,483 | INFO     | intersect: -15469860123.015202
[2025-12-02 17:27:34] 2025-12-03 01:26:44,487 | INFO     | chi2: 0.11014753108474815
[2025-12-02 17:27:34] 2025-12-03 01:26:44,487 | INFO     | current memory leak: 8.77 B/s (using 852 data points, chi2=0.11)
[2025-12-02 17:27:34] 2025-12-03 01:26:44,488 | INFO     | could have reported an average CPU frequency of 4000 MHz (33 samples)
[2025-12-02 17:27:34] 2025-12-03 01:26:44,488 | INFO     | ..............................
[2025-12-02 17:27:34] 2025-12-03 01:26:44,488 | INFO     | . Timing measurements:
[2025-12-02 17:27:34] 2025-12-03 01:26:44,488 | INFO     | . get job = 0 s
[2025-12-02 17:27:34] 2025-12-03 01:26:44,488 | INFO     | . initial setup = 3 s
[2025-12-02 17:27:34] 2025-12-03 01:26:44,488 | INFO     | . payload setup = 9 s
[2025-12-02 17:27:34] 2025-12-03 01:26:44,488 | INFO     | . stage-in = 0 s
[2025-12-02 17:27:34] 2025-12-03 01:26:44,488 | INFO     | . payload execution = 53821 s
[2025-12-02 17:27:34] 2025-12-03 01:26:44,488 | INFO     | . stage-out = 5 s
[2025-12-02 17:27:34] 2025-12-03 01:26:44,488 | INFO     | . log creation = 0 s
[2025-12-02 17:27:34] 2025-12-03 01:26:44,488 | INFO     | ..............................
[2025-12-02 17:27:34] 2025-12-03 01:26:44,543 | INFO     | 
[2025-12-02 17:27:34] 2025-12-03 01:26:44,544 | INFO     | job summary report
[2025-12-02 17:27:34] 2025-12-03 01:26:44,544 | INFO     | --------------------------------------------------
[2025-12-02 17:27:34] 2025-12-03 01:26:44,544 | INFO     | PanDA job id: 6895234485
[2025-12-02 17:27:34] 2025-12-03 01:26:44,544 | INFO     | task id: 47530725
[2025-12-02 17:27:34] 2025-12-03 01:26:44,544 | INFO     | errors: (none)
[2025-12-02 17:27:34] 2025-12-03 01:26:44,544 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 17:27:34] 2025-12-03 01:26:44,544 | INFO     | pilot state: finished 
[2025-12-02 17:27:34] 2025-12-03 01:26:44,544 | INFO     | transexitcode: 0
[2025-12-02 17:27:34] 2025-12-03 01:26:44,544 | INFO     | exeerrorcode: 0
[2025-12-02 17:27:34] 2025-12-03 01:26:44,544 | INFO     | exeerrordiag: 
[2025-12-02 17:27:34] 2025-12-03 01:26:44,544 | INFO     | exitcode: 0
[2025-12-02 17:27:34] 2025-12-03 01:26:44,544 | INFO     | exitmsg: OK
[2025-12-02 17:27:34] 2025-12-03 01:26:44,544 | INFO     | cpuconsumptiontime: 117768 s
[2025-12-02 17:27:34] 2025-12-03 01:26:44,544 | INFO     | nevents: 1000
[2025-12-02 17:27:34] 2025-12-03 01:26:44,544 | INFO     | neventsw: 0
[2025-12-02 17:27:34] 2025-12-03 01:26:44,545 | INFO     | pid: 1781322
[2025-12-02 17:27:34] 2025-12-03 01:26:44,545 | INFO     | pgrp: 1781322
[2025-12-02 17:27:34] 2025-12-03 01:26:44,545 | INFO     | corecount: 10
[2025-12-02 17:27:34] 2025-12-03 01:26:44,545 | INFO     | event service: False
[2025-12-02 17:27:34] 2025-12-03 01:26:44,545 | INFO     | sizes: {0: 2284476, 5: 2284738, 11: 2284794, 53835: 2353701, 53842: 2362723, 53844: 2362779, 53850: 2363217}
[2025-12-02 17:27:34] 2025-12-03 01:26:44,545 | INFO     | --------------------------------------------------
[2025-12-02 17:27:34] 2025-12-03 01:26:44,545 | INFO     | 
[2025-12-02 17:27:34] 2025-12-03 01:26:44,545 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc522/slots/3
[2025-12-02 17:27:34] 2025-12-03 01:26:44,568 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 17:27:34] 2025-12-03 01:26:44,568 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 17:27:34] 2025-12-03 01:26:44,568 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 17:27:34] 2025-12-03 01:26:44,568 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 17:27:34] 2025-12-03 01:26:44,568 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 17:27:34] 2025-12-03 01:26:44,568 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 17:27:34] 2025-12-03 01:26:44,568 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 17:27:34] 2025-12-03 01:26:44,568 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 17:27:34] 2025-12-03 01:26:44,568 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 17:27:34] 2025-12-03 01:26:44,568 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 17:27:34] 2025-12-03 01:26:44,568 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 17:27:34] 2025-12-03 01:26:44,569 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 17:27:34] 2025-12-03 01:26:44,569 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 17:27:34] 2025-12-03 01:26:44,569 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 17:27:34] 2025-12-03 01:26:44,569 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 17:27:34] 2025-12-03 01:26:44,569 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 17:27:34] 2025-12-03 01:26:44,569 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 17:27:34] 2025-12-03 01:26:44,569 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 17:27:34] 2025-12-03 01:26:44,569 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 17:27:34] 2025-12-03 01:26:44,569 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 17:27:34] 2025-12-03 01:26:44,569 | INFO     | job 6895234485 has completed (purged errors)
[2025-12-02 17:27:34] 2025-12-03 01:26:44,569 | INFO     | overall cleanup function is called
[2025-12-02 17:27:34] 2025-12-03 01:26:45,585 | INFO     | --- collectZombieJob: --- 10, [1781322]
[2025-12-02 17:27:34] 2025-12-03 01:26:45,585 | INFO     | zombie collector waiting for pid 1781322
[2025-12-02 17:27:34] 2025-12-03 01:26:45,585 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 17:27:34] 2025-12-03 01:26:45,585 | INFO     | collected zombie processes
[2025-12-02 17:27:34] 2025-12-03 01:26:45,585 | INFO     | will attempt to kill all subprocesses of pid=1781322
[2025-12-02 17:27:34] 2025-12-03 01:26:45,879 | INFO     | process IDs to be killed: [1781322] (in reverse order)
[2025-12-02 17:27:34] 2025-12-03 01:26:46,019 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 17:27:34] 2025-12-03 01:26:46,019 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 17:27:34] 2025-12-03 01:26:46,025 | INFO     | did not find any defunct processes belonging to 1781322
[2025-12-02 17:27:34] 2025-12-03 01:26:46,029 | INFO     | did not find any defunct processes belonging to 1781322
[2025-12-02 17:27:34] 2025-12-03 01:26:46,030 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 17:27:34] 2025-12-03 01:26:46,030 | INFO     | ready for new job
[2025-12-02 17:27:34] 2025-12-03 01:26:46,030 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 17:27:34] 2025-12-03 01:26:46,032 | INFO     | ***************************************
[2025-12-02 17:27:34] 2025-12-03 01:26:46,032 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 17:27:34] 2025-12-03 01:26:46,032 | INFO     | ***************************************
[2025-12-02 17:27:34] 2025-12-03 01:26:46,032 | INFO     | 
[2025-12-02 17:27:34] 2025-12-03 01:26:46,034 | INFO     | architecture information:
[2025-12-02 17:27:34] 2025-12-03 01:26:46,034 | INFO     | executing command: cat /etc/os-release
[2025-12-02 17:27:34] 2025-12-03 01:26:46,050 | INFO     | cat /etc/os-release:
[2025-12-02 17:27:34] NAME="CentOS Linux"
[2025-12-02 17:27:34] VERSION="7 (Core)"
[2025-12-02 17:27:34] ID="centos"
[2025-12-02 17:27:34] ID_LIKE="rhel fedora"
[2025-12-02 17:27:34] VERSION_ID="7"
[2025-12-02 17:27:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 17:27:34] ANSI_COLOR="0;31"
[2025-12-02 17:27:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 17:27:34] HOME_URL="https://www.centos.org/"
[2025-12-02 17:27:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 17:27:34] 
[2025-12-02 17:27:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 17:27:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 17:27:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 17:27:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 17:27:34] 
[2025-12-02 17:27:34] 2025-12-03 01:26:46,050 | INFO     | ***************************************
[2025-12-02 17:27:34] 2025-12-03 01:26:46,552 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc522/slots/3
[2025-12-02 17:27:34] 2025-12-03 01:26:46,571 | INFO     | sufficient remaining disk space (171603656704 B)
[2025-12-02 17:27:34] 2025-12-03 01:26:46,571 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 17:27:34] 2025-12-03 01:26:46,571 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 17:27:34] 2025-12-03 01:26:46,571 | INFO     | update_server=False
[2025-12-02 17:27:34] 2025-12-03 01:26:46,571 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 17:27:34] 2025-12-03 01:26:46,644 | INFO     | all job control threads have been joined
[2025-12-02 17:27:34] 2025-12-03 01:26:46,695 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 17:27:34] 2025-12-03 01:26:46,885 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-02 17:27:34] 2025-12-03 01:26:46,885 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-02 17:27:34] 2025-12-03 01:26:46,885 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 17:27:34] 2025-12-03 01:26:46,885 | INFO     | will abort loop
[2025-12-02 17:27:34] 2025-12-03 01:26:47,454 | INFO     | all data control threads have been joined
[2025-12-02 17:27:34] 2025-12-03 01:26:47,576 | INFO     | [job] retrieve thread has finished
[2025-12-02 17:27:34] 2025-12-03 01:26:47,649 | INFO     | [job] control thread has finished
[2025-12-02 17:27:34] 2025-12-03 01:26:47,870 | INFO     | all payload control threads have been joined
[2025-12-02 17:27:34] 2025-12-03 01:26:47,890 | INFO     | [job] job monitor thread has finished
[2025-12-02 17:27:34] 2025-12-03 01:26:47,949 | INFO     | [payload] validate_post thread has finished
[2025-12-02 17:27:34] 2025-12-03 01:26:48,252 | INFO     | [payload] failed_post thread has finished
[2025-12-02 17:27:34] 2025-12-03 01:26:48,263 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 17:27:34] 2025-12-03 01:26:48,274 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 17:27:34] 2025-12-03 01:26:48,378 | INFO     | [job] validate thread has finished
[2025-12-02 17:27:34] 2025-12-03 01:26:48,381 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 17:27:34] 2025-12-03 01:26:48,459 | INFO     | [data] control thread has finished
[2025-12-02 17:27:34] 2025-12-03 01:26:48,534 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 17:27:34] 2025-12-03 01:26:48,688 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 17:27:34] 2025-12-03 01:26:48,700 | INFO     | [data] copytool_out thread has finished
[2025-12-02 17:27:34] 2025-12-03 01:26:48,706 | INFO     | [data] copytool_in thread has finished
[2025-12-02 17:27:34] 2025-12-03 01:26:48,875 | INFO     | [payload] control thread has finished
[2025-12-02 17:27:34] 2025-12-03 01:26:49,553 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 17:27:34] 2025-12-03 01:26:50,558 | INFO     | [job] queue monitor thread has finished
[2025-12-02 17:27:34] 2025-12-03 01:26:52,542 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 17:27:34] 2025-12-03 01:27:17,488 | INFO     | PID=1771854 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 17:27:34] 2025-12-03 01:27:17,488 | INFO     | .. there are 13 such processes running
[2025-12-02 17:27:34] 2025-12-03 01:27:17,488 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 17:27:34] 2025-12-03 01:27:17,489 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 17:27:34] 2025-12-03 01:27:17,489 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 17:27:34] 2025-12-03 01:27:28,310 | INFO     | [monitor] cgroup control has ended
[2025-12-02 17:27:34] 2025-12-03 01:27:29,581 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123143305324352)>', '<ExcThread(monitor, started 123142550845184)>']
[2025-12-02 17:27:34] 2025-12-03 01:27:30,559 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 17:27:34] 2025-12-03 01:27:30,559 | INFO     | [monitor] control thread has ended
[2025-12-02 17:27:34] 2025-12-03 01:27:34,606 | INFO     | all workflow threads have been joined
[2025-12-02 17:27:34] 2025-12-03 01:27:34,606 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 17:27:34] 2025-12-03 01:27:34,606 | INFO     | traces error code: 0
[2025-12-02 17:27:34] 2025-12-03 01:27:34,606 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 17:27:34] 2025-12-03 01:27:34,710 [wrapper] ==== pilot stdout END ====
[2025-12-02 17:27:34] 2025-12-03 01:27:34,713 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 17:27:34] 2025-12-03 01:27:34,715 [wrapper] pilotpid: 1771854
[2025-12-02 17:27:34] 2025-12-03 01:27:34,717 [wrapper] Pilot exit status: 0
[2025-12-02 17:27:34] 2025-12-03 01:27:34,730 [wrapper] pandaids: 6895234485
[2025-12-02 17:27:34] 2025-12-03 01:27:34,783 [wrapper] cleanup supervisor_pilot 2902218 1771855
[2025-12-02 17:27:34] 2025-12-03 01:27:34,785 [wrapper] Test setup, not cleaning
[2025-12-02 17:27:34] 2025-12-03 01:27:34,787 [wrapper] apfmon messages muted
[2025-12-02 17:27:34] 2025-12-03 01:27:34,788 [wrapper] ==== wrapper stdout END ====
[2025-12-02 17:27:34] 2025-12-03 01:27:34,790 [wrapper] ==== wrapper stderr END ====
[2025-12-02 17:27:34]  *** Error codes and diagnostics ***
[2025-12-02 17:27:34]     "exeErrorCode": 0,
[2025-12-02 17:27:34]     "exeErrorDiag": "",
[2025-12-02 17:27:34]     "pilotErrorCode": 0,
[2025-12-02 17:27:34]     "pilotErrorDiag": "",
[2025-12-02 17:27:34]  *** Listing of results directory ***
[2025-12-02 17:27:34] total 1075408
[2025-12-02 17:27:34] -rw-r--r-- 1 root root    576529 Nov 28 02:28 pilot3.tar.gz
[2025-12-02 17:27:34] -rwx------ 1 4871 1028     36292 Nov 28 02:31 runpilot2-wrapper.sh
[2025-12-02 17:27:34] -rw-r--r-- 1 root root      5112 Nov 28 02:33 queuedata.json
[2025-12-02 17:27:34] -rw-r--r-- 1 root root       100 Dec  2 02:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 17:27:34] -rwxr-xr-x 1 root root      7986 Dec  2 02:28 run_atlas
[2025-12-02 17:27:34] -rw-r--r-- 1 root root       105 Dec  2 02:28 job.xml
[2025-12-02 17:27:34] -rw-r--r-- 2 root root 373437716 Dec  2 02:28 EVNT.47530720._000135.pool.root.1
[2025-12-02 17:27:34] -rw-r--r-- 1 root root      7073 Dec  2 02:28 init_data.xml
[2025-12-02 17:27:34] drwxrwx--x 2 root root      4096 Dec  2 02:28 shared
[2025-12-02 17:27:34] -rw-r--r-- 2 root root    590117 Dec  2 02:28 input.tar.gz
[2025-12-02 17:27:34] -rw-r--r-- 2 root root     15847 Dec  2 02:28 start_atlas.sh
[2025-12-02 17:27:34] -rw-r--r-- 1 root root         0 Dec  2 02:28 boinc_lockfile
[2025-12-02 17:27:34] -rw-r--r-- 1 root root      2889 Dec  2 02:28 pandaJob.out
[2025-12-02 17:27:34] -rw------- 1 root root    986775 Dec  2 02:28 agis_schedconf.cvmfs.json
[2025-12-02 17:27:34] drwxr-xr-x 5  320  320      4096 Dec  2 02:28 pilot3
[2025-12-02 17:27:34] -rw-r--r-- 1 root root       533 Dec  2 17:18 boinc_task_state.xml
[2025-12-02 17:27:34] -rw------- 1 root root 703798550 Dec  2 17:26 HITS.47530725._001346.pool.root.1
[2025-12-02 17:27:34] -rw------- 1 root root      1050 Dec  2 17:26 memory_monitor_summary.json
[2025-12-02 17:27:34] -rw------- 1 root root   1516240 Dec  2 17:26 agis_ddmendpoints.agis.ALL.json
[2025-12-02 17:27:34] -rw------- 1 root root   2371453 Dec  2 17:26 log.47530725._001346.job.log.tgz.1
[2025-12-02 17:27:34] -rw------- 1 root root     28289 Dec  2 17:26 heartbeat.json
[2025-12-02 17:27:34] -rw------- 1 root root        95 Dec  2 17:27 pilot_heartbeat.json
[2025-12-02 17:27:34] -rw-r--r-- 1 root root        29 Dec  2 17:27 wrapper_checkpoint.txt
[2025-12-02 17:27:34] -rw-r--r-- 1 root root      8192 Dec  2 17:27 boinc_mmap_file
[2025-12-02 17:27:34] -rw------- 1 root root      5025 Dec  2 17:27 pilotlog.txt
[2025-12-02 17:27:34] -rw------- 1 root root   7648016 Dec  2 17:27 log.47530725._001346.job.log.1
[2025-12-02 17:27:34] -rw------- 1 root root       353 Dec  2 17:27 output.list
[2025-12-02 17:27:34] -rw-r--r-- 1 root root       620 Dec  2 17:27 runtime_log
[2025-12-02 17:27:34] -rw------- 1 root root  10055680 Dec  2 17:27 result.tar.gz
[2025-12-02 17:27:34] -rw-r--r-- 1 root root      9021 Dec  2 17:27 runtime_log.err
[2025-12-02 17:27:34] -rw------- 1 root root       662 Dec  2 17:27 fDxNDm9vAj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmDMLKDmvURbTm.diag
[2025-12-02 17:27:34] -rw-r--r-- 1 root root     21430 Dec  2 17:27 stderr.txt
[2025-12-02 17:27:34] HITS file was successfully produced:
[2025-12-02 17:27:34] -rw------- 1 root root 703798550 Dec  2 17:26 shared/HITS.pool.root.1
[2025-12-02 17:27:34]  *** Contents of shared directory: ***
[2025-12-02 17:27:34] total 1062416
[2025-12-02 17:27:34] -rw-r--r-- 2 root root 373437716 Dec  2 02:28 ATLAS.root_0
[2025-12-02 17:27:34] -rw-r--r-- 2 root root    590117 Dec  2 02:28 input.tar.gz
[2025-12-02 17:27:34] -rw-r--r-- 2 root root     15847 Dec  2 02:28 start_atlas.sh
[2025-12-02 17:27:34] -rw------- 1 root root 703798550 Dec  2 17:26 HITS.pool.root.1
[2025-12-02 17:27:34] -rw------- 1 root root  10055680 Dec  2 17:27 result.tar.gz
17:27:36 (1768000): run_atlas exited; CPU time 118042.414761
17:27:36 (1768000): called boinc_finish(0)

</stderr_txt>
]]>

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