Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:54:20 (246817): wrapper (7.7.26015): starting
18:54:20 (246817): wrapper: running run_atlas (--nthreads 4)
[2025-12-06 18:54:20] Arguments: --nthreads 4
[2025-12-06 18:54:20] Threads: 4
[2025-12-06 18:54:20] Checking for CVMFS
[2025-12-06 18:54:20] No cvmfs_config command found, will try listing directly
[2025-12-06 18:54:20] CVMFS is ok
[2025-12-06 18:54:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-06 18:54:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-06 18:54:20] Further information can be found at the LHC@home message board.
[2025-12-06 18:54:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-06 18:54:20] Checking for apptainer binary...
[2025-12-06 18:54:20] which: no apptainer in ((null))
[2025-12-06 18:54:20] apptainer is not installed, using version from CVMFS
[2025-12-06 18:54:20] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-06 18:54:20] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2025-12-06 18:54:20] apptainer works
[2025-12-06 18:54:20] Set ATHENA_PROC_NUMBER=4
[2025-12-06 18:54:20] Set ATHENA_CORE_NUMBER=4
[2025-12-06 18:54:21] Starting ATLAS job with PandaID=6895329900
[2025-12-06 18:54:21] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-07 12:39:13]  *** The last 200 lines of the pilot log: ***
[2025-12-07 12:39:13] 2025-12-07 11:30:33,908 | INFO     | time since job start (63358s) is within the limit (172800.0s)
[2025-12-07 12:39:13] 2025-12-07 11:30:33,979 | INFO     | monitor loop #4554: job 0:6895329900 is in state 'finished'
[2025-12-07 12:39:13] 2025-12-07 11:30:33,979 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-07 12:39:13] 2025-12-07 11:30:34,925 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-07 12:39:13] 2025-12-07 11:30:34,935 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2674.9586875
[2025-12-07 12:39:13] 2025-12-07 11:30:34,948 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6895329900/memory_monitor_summary.json (trf name=prmon)
[2025-12-07 12:39:13] 2025-12-07 11:30:34,948 | INFO     | extracted standard info from prmon json
[2025-12-07 12:39:13] 2025-12-07 11:30:34,949 | INFO     | extracted standard memory fields from prmon json
[2025-12-07 12:39:13] 2025-12-07 11:30:34,949 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-07 12:39:13] 2025-12-07 11:30:34,967 | INFO     | fitting pss+swap vs Time
[2025-12-07 12:39:13] 2025-12-07 11:30:34,968 | INFO     | sum of square deviations: 346792759109.4991
[2025-12-07 12:39:13] 2025-12-07 11:30:34,990 | INFO     | sum of deviations: 1193069510549.1719
[2025-12-07 12:39:13] 2025-12-07 11:30:34,991 | INFO     | mean x: 1765075330.5009634
[2025-12-07 12:39:13] 2025-12-07 11:30:34,991 | INFO     | mean y: 2301433.8285163776
[2025-12-07 12:39:13] 2025-12-07 11:30:34,991 | INFO     | intersect: -6070078987.408256
[2025-12-07 12:39:13] 2025-12-07 11:30:34,992 | INFO     | chi2: 3.6732520269625084
[2025-12-07 12:39:13] 2025-12-07 11:30:34,993 | INFO     | sum of square deviations: 341805400786.9991
[2025-12-07 12:39:13] 2025-12-07 11:30:35,015 | INFO     | sum of deviations: 1377524548039.9414
[2025-12-07 12:39:13] 2025-12-07 11:30:35,015 | INFO     | mean x: 1765075178.000968
[2025-12-07 12:39:13] 2025-12-07 11:30:35,015 | INFO     | mean y: 2307069.060019361
[2025-12-07 12:39:13] 2025-12-07 11:30:35,015 | INFO     | intersect: -7111197811.886803
[2025-12-07 12:39:13] 2025-12-07 11:30:35,017 | INFO     | chi2: 1.9830150838440113
[2025-12-07 12:39:13] 2025-12-07 11:30:35,017 | INFO     | current chi2=1.9830150838440113 (change=46.014728385413584 %)
[2025-12-07 12:39:13] 2025-12-07 11:30:35,018 | INFO     | sum of square deviations: 336866089876.9982
[2025-12-07 12:39:13] 2025-12-07 11:30:35,039 | INFO     | sum of deviations: 1401510712962.9197
[2025-12-07 12:39:13] 2025-12-07 11:30:35,040 | INFO     | mean x: 1765075025.5009727
[2025-12-07 12:39:13] 2025-12-07 11:30:35,040 | INFO     | mean y: 2307806.5807392998
[2025-12-07 12:39:13] 2025-12-07 11:30:35,040 | INFO     | intersect: -7341178616.54417
[2025-12-07 12:39:13] 2025-12-07 11:30:35,041 | INFO     | chi2: 1.872100468044644
[2025-12-07 12:39:13] 2025-12-07 11:30:35,041 | INFO     | current chi2=1.872100468044644 (change=5.593231070353878 %)
[2025-12-07 12:39:13] 2025-12-07 11:30:35,041 | INFO     | right removable region: 1027
[2025-12-07 12:39:13] 2025-12-07 11:30:35,043 | INFO     | sum of square deviations: 341805400176.9991
[2025-12-07 12:39:13] 2025-12-07 11:30:35,064 | INFO     | sum of deviations: 1000110167027.9205
[2025-12-07 12:39:13] 2025-12-07 11:30:35,064 | INFO     | mean x: 1765075483.000968
[2025-12-07 12:39:13] 2025-12-07 11:30:35,064 | INFO     | mean y: 2307325.079380445
[2025-12-07 12:39:13] 2025-12-07 11:30:35,065 | INFO     | intersect: -5162239329.850196
[2025-12-07 12:39:13] 2025-12-07 11:30:35,066 | INFO     | chi2: 1.8982721654344588
[2025-12-07 12:39:13] 2025-12-07 11:30:35,066 | INFO     | current chi2=1.8982721654344588 (change=48.32175544991992 %)
[2025-12-07 12:39:13] 2025-12-07 11:30:35,067 | INFO     | sum of square deviations: 336866088656.9982
[2025-12-07 12:39:13] 2025-12-07 11:30:35,089 | INFO     | sum of deviations: 968834714603.8087
[2025-12-07 12:39:13] 2025-12-07 11:30:35,089 | INFO     | mean x: 1765075635.5009727
[2025-12-07 12:39:13] 2025-12-07 11:30:35,089 | INFO     | mean y: 2308290.190661479
[2025-12-07 12:39:13] 2025-12-07 11:30:35,089 | INFO     | intersect: -5074090335.721295
[2025-12-07 12:39:13] 2025-12-07 11:30:35,090 | INFO     | chi2: 1.886736998586675
[2025-12-07 12:39:13] 2025-12-07 11:30:35,091 | INFO     | current chi2=1.886736998586675 (change=0.6076666485358069 %)
[2025-12-07 12:39:13] 2025-12-07 11:30:35,091 | INFO     | left removable region: 20
[2025-12-07 12:39:13] 2025-12-07 11:30:35,092 | INFO     | sum of square deviations: 316640410888.9992
[2025-12-07 12:39:13] 2025-12-07 11:30:35,112 | INFO     | sum of deviations: 1137568170574.0918
[2025-12-07 12:39:13] 2025-12-07 11:30:35,112 | INFO     | mean x: 1765075605.000993
[2025-12-07 12:39:13] 2025-12-07 11:30:35,113 | INFO     | mean y: 2315913.908639523
[2025-12-07 12:39:13] 2025-12-07 11:30:35,113 | INFO     | intersect: -6338927205.592683
[2025-12-07 12:39:13] 2025-12-07 11:30:35,114 | INFO     | chi2: 0.07900030590858986
[2025-12-07 12:39:13] 2025-12-07 11:30:35,114 | INFO     | current memory leak: 3.59 B/s (using 1007 data points, chi2=0.08)
[2025-12-07 12:39:13] 2025-12-07 11:30:35,116 | INFO     | could have reported an average CPU frequency of 2665 MHz (38 samples)
[2025-12-07 12:39:13] 2025-12-07 11:30:35,116 | INFO     | ..............................
[2025-12-07 12:39:13] 2025-12-07 11:30:35,116 | INFO     | . Timing measurements:
[2025-12-07 12:39:13] 2025-12-07 11:30:35,116 | INFO     | . get job = 0 s
[2025-12-07 12:39:13] 2025-12-07 11:30:35,116 | INFO     | . initial setup = 1 s
[2025-12-07 12:39:13] 2025-12-07 11:30:35,116 | INFO     | . payload setup = 6 s
[2025-12-07 12:39:13] 2025-12-07 11:30:35,116 | INFO     | . stage-in = 0 s
[2025-12-07 12:39:13] 2025-12-07 11:30:35,116 | INFO     | . payload execution = 63322 s
[2025-12-07 12:39:13] 2025-12-07 11:30:35,117 | INFO     | . stage-out = 2 s
[2025-12-07 12:39:13] 2025-12-07 11:30:35,117 | INFO     | . log creation = 0 s
[2025-12-07 12:39:13] 2025-12-07 11:30:35,117 | INFO     | ..............................
[2025-12-07 12:39:13] 2025-12-07 11:30:35,258 | INFO     | 
[2025-12-07 12:39:13] 2025-12-07 11:30:35,258 | INFO     | job summary report
[2025-12-07 12:39:13] 2025-12-07 11:30:35,258 | INFO     | --------------------------------------------------
[2025-12-07 12:39:13] 2025-12-07 11:30:35,258 | INFO     | PanDA job id: 6895329900
[2025-12-07 12:39:13] 2025-12-07 11:30:35,258 | INFO     | task id: 47556137
[2025-12-07 12:39:13] 2025-12-07 11:30:35,259 | INFO     | errors: (none)
[2025-12-07 12:39:13] 2025-12-07 11:30:35,259 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-07 12:39:13] 2025-12-07 11:30:35,259 | INFO     | pilot state: finished 
[2025-12-07 12:39:13] 2025-12-07 11:30:35,259 | INFO     | transexitcode: 0
[2025-12-07 12:39:13] 2025-12-07 11:30:35,259 | INFO     | exeerrorcode: 0
[2025-12-07 12:39:13] 2025-12-07 11:30:35,259 | INFO     | exeerrordiag: 
[2025-12-07 12:39:13] 2025-12-07 11:30:35,259 | INFO     | exitcode: 0
[2025-12-07 12:39:13] 2025-12-07 11:30:35,259 | INFO     | exitmsg: OK
[2025-12-07 12:39:13] 2025-12-07 11:30:35,259 | INFO     | cpuconsumptiontime: 250786 s
[2025-12-07 12:39:13] 2025-12-07 11:30:35,259 | INFO     | nevents: 1000
[2025-12-07 12:39:13] 2025-12-07 11:30:35,259 | INFO     | neventsw: 0
[2025-12-07 12:39:13] 2025-12-07 11:30:35,260 | INFO     | pid: 258512
[2025-12-07 12:39:13] 2025-12-07 11:30:35,260 | INFO     | pgrp: 258512
[2025-12-07 12:39:13] 2025-12-07 11:30:35,260 | INFO     | corecount: 4
[2025-12-07 12:39:13] 2025-12-07 11:30:35,260 | INFO     | event service: False
[2025-12-07 12:39:13] 2025-12-07 11:30:35,260 | INFO     | sizes: {0: 2284326, 5: 2284588, 11: 2284644, 63332: 2338764, 63336: 2347780, 63337: 2347836, 63344: 2348210}
[2025-12-07 12:39:13] 2025-12-07 11:30:35,260 | INFO     | --------------------------------------------------
[2025-12-07 12:39:13] 2025-12-07 11:30:35,260 | INFO     | 
[2025-12-07 12:39:13] 2025-12-07 11:30:35,260 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2025-12-07 12:39:13] 2025-12-07 11:30:35,285 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-07 12:39:13] 2025-12-07 11:30:35,285 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-07 12:39:13] 2025-12-07 11:30:35,285 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-07 12:39:13] 2025-12-07 11:30:35,285 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-07 12:39:13] 2025-12-07 11:30:35,285 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-07 12:39:13] 2025-12-07 11:30:35,285 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-07 12:39:13] 2025-12-07 11:30:35,286 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-07 12:39:13] 2025-12-07 11:30:35,286 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-07 12:39:13] 2025-12-07 11:30:35,286 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-07 12:39:13] 2025-12-07 11:30:35,286 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-07 12:39:13] 2025-12-07 11:30:35,286 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-07 12:39:13] 2025-12-07 11:30:35,286 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-07 12:39:13] 2025-12-07 11:30:35,286 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-07 12:39:13] 2025-12-07 11:30:35,286 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-07 12:39:13] 2025-12-07 11:30:35,286 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-07 12:39:13] 2025-12-07 11:30:35,286 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-07 12:39:13] 2025-12-07 11:30:35,286 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-07 12:39:13] 2025-12-07 11:30:35,287 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-07 12:39:13] 2025-12-07 11:30:35,287 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-07 12:39:13] 2025-12-07 11:30:35,287 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-07 12:39:13] 2025-12-07 11:30:35,287 | INFO     | job 6895329900 has completed (purged errors)
[2025-12-07 12:39:13] 2025-12-07 11:30:35,287 | INFO     | overall cleanup function is called
[2025-12-07 12:39:13] 2025-12-07 11:30:36,301 | INFO     | --- collectZombieJob: --- 10, [258512]
[2025-12-07 12:39:13] 2025-12-07 11:30:36,301 | INFO     | zombie collector waiting for pid 258512
[2025-12-07 12:39:13] 2025-12-07 11:30:36,301 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-07 12:39:13] 2025-12-07 11:30:36,301 | INFO     | collected zombie processes
[2025-12-07 12:39:13] 2025-12-07 11:30:36,301 | INFO     | will attempt to kill all subprocesses of pid=258512
[2025-12-07 12:39:13] 2025-12-07 11:30:36,699 | INFO     | process IDs to be killed: [258512] (in reverse order)
[2025-12-07 12:39:13] 2025-12-07 11:30:36,816 | WARNING  | found no corresponding commands to process id(s)
[2025-12-07 12:39:13] 2025-12-07 11:30:36,817 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-07 12:39:13] 2025-12-07 11:30:36,830 | INFO     | did not find any defunct processes belonging to 258512
[2025-12-07 12:39:13] 2025-12-07 11:30:36,844 | INFO     | did not find any defunct processes belonging to 258512
[2025-12-07 12:39:13] 2025-12-07 11:30:36,845 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-07 12:39:13] 2025-12-07 11:30:36,845 | INFO     | ready for new job
[2025-12-07 12:39:13] 2025-12-07 11:30:36,846 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-07 12:39:13] 2025-12-07 11:30:36,851 | INFO     | ***************************************
[2025-12-07 12:39:13] 2025-12-07 11:30:36,852 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-07 12:39:13] 2025-12-07 11:30:36,852 | INFO     | ***************************************
[2025-12-07 12:39:13] 2025-12-07 11:30:36,852 | INFO     | 
[2025-12-07 12:39:13] 2025-12-07 11:30:36,856 | INFO     | architecture information:
[2025-12-07 12:39:13] 2025-12-07 11:30:36,856 | INFO     | executing command: cat /etc/os-release
[2025-12-07 12:39:13] 2025-12-07 11:30:36,873 | INFO     | cat /etc/os-release:
[2025-12-07 12:39:13] NAME="CentOS Linux"
[2025-12-07 12:39:13] VERSION="7 (Core)"
[2025-12-07 12:39:13] ID="centos"
[2025-12-07 12:39:13] ID_LIKE="rhel fedora"
[2025-12-07 12:39:13] VERSION_ID="7"
[2025-12-07 12:39:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-07 12:39:13] ANSI_COLOR="0;31"
[2025-12-07 12:39:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-07 12:39:13] HOME_URL="https://www.centos.org/"
[2025-12-07 12:39:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-07 12:39:13] 
[2025-12-07 12:39:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-07 12:39:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-07 12:39:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-07 12:39:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-07 12:39:13] 
[2025-12-07 12:39:13] 2025-12-07 11:30:36,873 | INFO     | ***************************************
[2025-12-07 12:39:13] 2025-12-07 11:30:37,376 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2025-12-07 12:39:13] 2025-12-07 11:30:37,392 | INFO     | sufficient remaining disk space (687651946496 B)
[2025-12-07 12:39:13] 2025-12-07 11:30:37,393 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-07 12:39:13] 2025-12-07 11:30:37,393 | INFO     | current server update state: UPDATING_FINAL
[2025-12-07 12:39:13] 2025-12-07 11:30:37,393 | INFO     | update_server=False
[2025-12-07 12:39:13] 2025-12-07 11:30:37,393 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-07 12:39:13] 2025-12-07 11:30:37,394 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-07 12:39:13] 2025-12-07 11:30:37,493 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-07 12:39:13] 2025-12-07 11:30:37,493 | INFO     | aborting loop
[2025-12-07 12:39:13] 2025-12-07 11:30:38,126 | INFO     | all payload control threads have been joined
[2025-12-07 12:39:13] 2025-12-07 11:30:38,245 | INFO     | all data control threads have been joined
[2025-12-07 12:39:13] 2025-12-07 11:30:38,333 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-07 12:39:13] 2025-12-07 11:30:38,399 | INFO     | [job] retrieve thread has finished
[2025-12-07 12:39:13] 2025-12-07 11:30:38,477 | INFO     | [payload] validate_pre thread has finished
[2025-12-07 12:39:13] 2025-12-07 11:30:38,498 | INFO     | [job] job monitor thread has finished
[2025-12-07 12:39:13] 2025-12-07 11:30:38,805 | INFO     | all job control threads have been joined
[2025-12-07 12:39:13] 2025-12-07 11:30:38,935 | INFO     | [payload] execute_payloads thread has finished
[2025-12-07 12:39:13] 2025-12-07 11:30:39,008 | INFO     | [job] validate thread has finished
[2025-12-07 12:39:13] 2025-12-07 11:30:39,011 | INFO     | [data] copytool_in thread has finished
[2025-12-07 12:39:13] 2025-12-07 11:30:39,132 | INFO     | [payload] control thread has finished
[2025-12-07 12:39:13] 2025-12-07 11:30:39,250 | INFO     | [data] control thread has finished
[2025-12-07 12:39:13] 2025-12-07 11:30:39,383 | INFO     | [payload] failed_post thread has finished
[2025-12-07 12:39:13] 2025-12-07 11:30:39,399 | INFO     | [data] copytool_out thread has finished
[2025-12-07 12:39:13] 2025-12-07 11:30:39,438 | INFO     | [job] create_data_payload thread has finished
[2025-12-07 12:39:13] 2025-12-07 11:30:39,693 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-07 12:39:13] 2025-12-07 11:30:39,811 | INFO     | [job] control thread has finished
[2025-12-07 12:39:13] 2025-12-07 11:30:39,999 | INFO     | [payload] validate_post thread has finished
[2025-12-07 12:39:13] 2025-12-07 11:30:40,224 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-07 12:39:13] 2025-12-07 11:30:41,229 | INFO     | [job] queue monitor thread has finished
[2025-12-07 12:39:13] 2025-12-07 11:30:42,339 | INFO     | [data] queue_monitor thread has finished
[2025-12-07 12:39:13] 2025-12-07 11:31:07,495 | INFO     | PID=251045 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-07 12:39:13] 2025-12-07 11:31:07,496 | INFO     | .. there are 3 such processes running
[2025-12-07 12:39:13] 2025-12-07 11:31:07,496 | INFO     | found 0 job(s) in 20 queues
[2025-12-07 12:39:13] 2025-12-07 11:31:07,497 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-07 12:39:13] 2025-12-07 11:31:07,497 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-07 12:39:13] 2025-12-07 11:31:18,684 | INFO     | [monitor] cgroup control has ended
[2025-12-07 12:39:13] 2025-12-07 11:31:19,372 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22748115400512)>', '<ExcThread(monitor, started 22747874813696)>']
[2025-12-07 12:39:13] 2025-12-07 11:31:19,557 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-07 12:39:13] 2025-12-07 11:31:19,558 | INFO     | [monitor] control thread has ended
[2025-12-07 12:39:13] 2025-12-07 11:31:24,388 | INFO     | all workflow threads have been joined
[2025-12-07 12:39:13] 2025-12-07 11:31:24,390 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-07 12:39:13] 2025-12-07 11:31:24,391 | INFO     | traces error code: 0
[2025-12-07 12:39:13] 2025-12-07 11:31:24,391 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-07 12:39:13] 2025-12-07 11:31:24,589 [wrapper] ==== pilot stdout END ====
[2025-12-07 12:39:13] 2025-12-07 11:31:24,592 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-07 12:39:13] 2025-12-07 11:31:24,594 [wrapper] pilotpid: 251045
[2025-12-07 12:39:13] 2025-12-07 11:31:24,597 [wrapper] Pilot exit status: 0
[2025-12-07 12:39:13] 2025-12-07 11:31:24,608 [wrapper] pandaids: 6895329900
[2025-12-07 12:39:13] 2025-12-07 11:31:24,689 [wrapper] cleanup supervisor_pilot 1011478 251046
[2025-12-07 12:39:13] 2025-12-07 11:31:24,692 [wrapper] Test setup, not cleaning
[2025-12-07 12:39:13] 2025-12-07 11:31:24,695 [wrapper] apfmon messages muted
[2025-12-07 12:39:13] 2025-12-07 11:31:24,699 [wrapper] ==== wrapper stdout END ====
[2025-12-07 12:39:13] 2025-12-07 11:31:24,702 [wrapper] ==== wrapper stderr END ====
[2025-12-07 12:39:13]  *** Error codes and diagnostics ***
[2025-12-07 12:39:13]     "exeErrorCode": 0,
[2025-12-07 12:39:13]     "exeErrorDiag": "",
[2025-12-07 12:39:13]     "pilotErrorCode": 0,
[2025-12-07 12:39:13]     "pilotErrorDiag": "",
[2025-12-07 12:39:13]  *** Listing of results directory ***
[2025-12-07 12:39:13] total 1322972
[2025-12-07 12:39:13] -rw-r--r-- 1 boinc boinc    576529 Nov 21 20:48 pilot3.tar.gz
[2025-12-07 12:39:13] -rwx------ 1 boinc boinc     36292 Nov 21 20:58 runpilot2-wrapper.sh
[2025-12-07 12:39:13] -rw-r--r-- 1 boinc boinc      5112 Nov 21 20:58 queuedata.json
[2025-12-07 12:39:13] -rw-r--r-- 1 boinc boinc       100 Dec  6 18:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-07 12:39:13] -rwxr-xr-x 1 boinc boinc      7986 Dec  6 18:54 run_atlas
[2025-12-07 12:39:13] -rw-r--r-- 1 boinc boinc       105 Dec  6 18:54 job.xml
[2025-12-07 12:39:13] -rw-r--r-- 1 boinc boinc      6639 Dec  6 18:54 init_data.xml
[2025-12-07 12:39:13] -rw-r--r-- 2 boinc boinc 412035855 Dec  6 18:54 EVNT.47483658._000127.pool.root.1
[2025-12-07 12:39:13] drwxrwx--x 2 boinc boinc      4096 Dec  6 18:54 shared
[2025-12-07 12:39:13] -rw-r--r-- 2 boinc boinc    590099 Dec  6 18:54 input.tar.gz
[2025-12-07 12:39:13] -rw-r--r-- 2 boinc boinc     15847 Dec  6 18:54 start_atlas.sh
[2025-12-07 12:39:13] -rw-r--r-- 1 boinc boinc         0 Dec  6 18:54 boinc_lockfile
[2025-12-07 12:39:13] -rw-r--r-- 1 boinc boinc      2786 Dec  6 18:54 pandaJob.out
[2025-12-07 12:39:13] -rw------- 1 boinc boinc    985902 Dec  6 18:54 agis_schedconf.cvmfs.json
[2025-12-07 12:39:13] drwx------ 5 boinc boinc      4096 Dec  6 18:54 pilot3
[2025-12-07 12:39:13] -rw-r--r-- 1 boinc boinc       531 Dec  7 12:21 boinc_task_state.xml
[2025-12-07 12:39:13] -rw------- 1 boinc boinc 917514000 Dec  7 12:29 HITS.47556137._001266.pool.root.1
[2025-12-07 12:39:13] -rw------- 1 boinc boinc      1043 Dec  7 12:30 memory_monitor_summary.json
[2025-12-07 12:39:13] -rw------- 1 boinc boinc   1516240 Dec  7 12:30 agis_ddmendpoints.agis.ALL.json
[2025-12-07 12:39:13] -rw------- 1 boinc boinc   1763017 Dec  7 12:30 log.47556137._001266.job.log.tgz.1
[2025-12-07 12:39:13] -rw------- 1 boinc boinc      8624 Dec  7 12:30 heartbeat.json
[2025-12-07 12:39:13] -rw------- 1 boinc boinc        95 Dec  7 12:31 pilot_heartbeat.json
[2025-12-07 12:39:13] -rw------- 1 boinc boinc      4832 Dec  7 12:31 pilotlog.txt
[2025-12-07 12:39:13] -rw------- 1 boinc boinc   8869038 Dec  7 12:31 log.47556137._001266.job.log.1
[2025-12-07 12:39:13] -rw------- 1 boinc boinc       353 Dec  7 12:31 output.list
[2025-12-07 12:39:13] -rw-r--r-- 1 boinc boinc       620 Dec  7 12:31 runtime_log
[2025-12-07 12:39:13] -rw------- 1 boinc boinc  10649600 Dec  7 12:31 result.tar.gz
[2025-12-07 12:39:13] -rw-r--r-- 1 boinc boinc      9206 Dec  7 12:31 runtime_log.err
[2025-12-07 12:39:13] -rw------- 1 boinc boinc       670 Dec  7 12:31 VsrKDmtRmg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAhJKDmFuJEzm.diag
[2025-12-07 12:39:13] -rw-r--r-- 1 boinc boinc        28 Dec  7 12:39 wrapper_checkpoint.txt
[2025-12-07 12:39:13] -rw-r--r-- 1 boinc boinc      8192 Dec  7 12:39 boinc_mmap_file
[2025-12-07 12:39:13] -rw-r--r-- 1 boinc boinc     21091 Dec  7 12:39 stderr.txt
[2025-12-07 12:39:13] HITS file was successfully produced:
[2025-12-07 12:39:13] -rw------- 1 boinc boinc 917514000 Dec  7 12:29 shared/HITS.pool.root.1
[2025-12-07 12:39:13]  *** Contents of shared directory: ***
[2025-12-07 12:39:13] total 1309396
[2025-12-07 12:39:13] -rw-r--r-- 2 boinc boinc 412035855 Dec  6 18:54 ATLAS.root_0
[2025-12-07 12:39:13] -rw-r--r-- 2 boinc boinc    590099 Dec  6 18:54 input.tar.gz
[2025-12-07 12:39:13] -rw-r--r-- 2 boinc boinc     15847 Dec  6 18:54 start_atlas.sh
[2025-12-07 12:39:13] -rw------- 1 boinc boinc 917514000 Dec  7 12:29 HITS.pool.root.1
[2025-12-07 12:39:13] -rw------- 1 boinc boinc  10649600 Dec  7 12:31 result.tar.gz
12:39:15 (246817): run_atlas exited; CPU time 253145.860014
12:39:15 (246817): called boinc_finish(0)

</stderr_txt>
]]>

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