Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
20:52:57 (27219): wrapper (7.7.26015): starting
20:52:57 (27219): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 20:52:57] Arguments: --nthreads 8
[2025-12-01 20:52:57] Threads: 8
[2025-12-01 20:52:57] Checking for CVMFS
[2025-12-01 20:52:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 20:52:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 20:52:57] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 20:52:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 20:52:57] 2.11.0.0 15975 72955 120448 153530 3 108 2096743 4096000 5646 130560 4 9355363 99.747 5120923 530 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-01 20:52:57] CVMFS is ok
[2025-12-01 20:52:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 20:52:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 20:52:57] Further information can be found at the LHC@home message board.
[2025-12-01 20:52:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 20:52:57] Checking for apptainer binary...
[2025-12-01 20:52:57] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-01 20:52:57] apptainer is not installed, using version from CVMFS
[2025-12-01 20:52:57] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 20:52:57] WARNING: Environment variable TMPDIR already has value [/tmp/job_10941492/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node050
[2025-12-01 20:52:57] apptainer works
[2025-12-01 20:52:57] Set ATHENA_PROC_NUMBER=8
[2025-12-01 20:52:57] Set ATHENA_CORE_NUMBER=8
[2025-12-01 20:52:57] Starting ATLAS job with PandaID=6893848744
[2025-12-01 20:52:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10941492/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 01:21:33]  *** The last 200 lines of the pilot log: ***
[2025-12-02 01:21:33] 2025-12-02 00:21:01,033 | INFO     | .. there are 2 such processes running
[2025-12-02 01:21:33] 2025-12-02 00:21:01,472 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 01:21:33] 2025-12-02 00:21:01,476 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2394.68584375
[2025-12-02 01:21:33] 2025-12-02 00:21:01,494 | INFO     | using path: /tmp/job_10941492/atlas/pilot/slots/0/PanDA_Pilot-6893848744/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 01:21:33] 2025-12-02 00:21:01,494 | INFO     | extracted standard info from prmon json
[2025-12-02 01:21:33] 2025-12-02 00:21:01,494 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 01:21:33] 2025-12-02 00:21:01,494 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 01:21:33] 2025-12-02 00:21:01,497 | INFO     | fitting pss+swap vs Time
[2025-12-02 01:21:33] 2025-12-02 00:21:01,497 | INFO     | sum of square deviations: 5705372090.0
[2025-12-02 01:21:33] 2025-12-02 00:21:01,498 | INFO     | sum of deviations: 160079141236.99994
[2025-12-02 01:21:33] 2025-12-02 00:21:01,498 | INFO     | mean x: 1764626820.5
[2025-12-02 01:21:33] 2025-12-02 00:21:01,498 | INFO     | mean y: 2914862.303030303
[2025-12-02 01:21:33] 2025-12-02 00:21:01,498 | INFO     | intersect: -49508307468.75752
[2025-12-02 01:21:33] 2025-12-02 00:21:01,498 | INFO     | chi2: 4.263622274388667
[2025-12-02 01:21:33] 2025-12-02 00:21:01,499 | INFO     | sum of square deviations: 5387301010.0
[2025-12-02 01:21:33] 2025-12-02 00:21:01,499 | INFO     | sum of deviations: 221707750690.00003
[2025-12-02 01:21:33] 2025-12-02 00:21:01,499 | INFO     | mean x: 1764626668.0
[2025-12-02 01:21:33] 2025-12-02 00:21:01,499 | INFO     | mean y: 2944275.7065637065
[2025-12-02 01:21:33] 2025-12-02 00:21:01,500 | INFO     | intersect: -72618097066.45328
[2025-12-02 01:21:33] 2025-12-02 00:21:01,500 | INFO     | chi2: 2.4113707209268935
[2025-12-02 01:21:33] 2025-12-02 00:21:01,500 | INFO     | current chi2=2.4113707209268935 (change=43.443143746296236 %)
[2025-12-02 01:21:33] 2025-12-02 00:21:01,500 | INFO     | sum of square deviations: 5081276667.5
[2025-12-02 01:21:33] 2025-12-02 00:21:01,501 | INFO     | sum of deviations: 203039579639.00003
[2025-12-02 01:21:33] 2025-12-02 00:21:01,501 | INFO     | mean x: 1764626515.5
[2025-12-02 01:21:33] 2025-12-02 00:21:01,501 | INFO     | mean y: 2934924.228346457
[2025-12-02 01:21:33] 2025-12-02 00:21:01,501 | INFO     | intersect: -70508680437.82837
[2025-12-02 01:21:33] 2025-12-02 00:21:01,501 | INFO     | chi2: 2.337295077892781
[2025-12-02 01:21:33] 2025-12-02 00:21:01,501 | INFO     | current chi2=2.337295077892781 (change=3.071930930870688 %)
[2025-12-02 01:21:33] 2025-12-02 00:21:01,501 | INFO     | right removable region: 253
[2025-12-02 01:21:33] 2025-12-02 00:21:01,501 | INFO     | sum of square deviations: 5387301010.0
[2025-12-02 01:21:33] 2025-12-02 00:21:01,502 | INFO     | sum of deviations: 87555611472.99997
[2025-12-02 01:21:33] 2025-12-02 00:21:01,502 | INFO     | mean x: 1764626973.0
[2025-12-02 01:21:33] 2025-12-02 00:21:01,502 | INFO     | mean y: 2949475.7413127413
[2025-12-02 01:21:33] 2025-12-02 00:21:01,502 | INFO     | intersect: -28676159665.54723
[2025-12-02 01:21:33] 2025-12-02 00:21:01,503 | INFO     | chi2: 2.0763759420964814
[2025-12-02 01:21:33] 2025-12-02 00:21:01,503 | INFO     | current chi2=2.0763759420964814 (change=51.3001901090265 %)
[2025-12-02 01:21:33] 2025-12-02 00:21:01,503 | INFO     | sum of square deviations: 5081276667.5
[2025-12-02 01:21:33] 2025-12-02 00:21:01,504 | INFO     | sum of deviations: 75756410295.49998
[2025-12-02 01:21:33] 2025-12-02 00:21:01,504 | INFO     | mean x: 1764627125.5
[2025-12-02 01:21:33] 2025-12-02 00:21:01,504 | INFO     | mean y: 2955344.224409449
[2025-12-02 01:21:33] 2025-12-02 00:21:01,504 | INFO     | intersect: -26305751165.10221
[2025-12-02 01:21:33] 2025-12-02 00:21:01,504 | INFO     | chi2: 2.0638571931068914
[2025-12-02 01:21:33] 2025-12-02 00:21:01,504 | INFO     | current chi2=2.0638571931068914 (change=0.6029134096472899 %)
[2025-12-02 01:21:33] 2025-12-02 00:21:01,504 | INFO     | left removable region: 20
[2025-12-02 01:21:33] 2025-12-02 00:21:01,504 | INFO     | sum of square deviations: 3922276332.0
[2025-12-02 01:21:33] 2025-12-02 00:21:01,505 | INFO     | sum of deviations: 101463463670.00003
[2025-12-02 01:21:33] 2025-12-02 00:21:01,505 | INFO     | mean x: 1764627095.0
[2025-12-02 01:21:33] 2025-12-02 00:21:01,505 | INFO     | mean y: 2984101.356223176
[2025-12-02 01:21:33] 2025-12-02 00:21:01,505 | INFO     | intersect: -45645298168.78501
[2025-12-02 01:21:33] 2025-12-02 00:21:01,505 | INFO     | chi2: 0.07329107707004215
[2025-12-02 01:21:33] 2025-12-02 00:21:01,505 | INFO     | current memory leak: 25.87 B/s (using 233 data points, chi2=0.07)
[2025-12-02 01:21:33] 2025-12-02 00:21:01,506 | INFO     | could have reported an average CPU frequency of 3048 MHz (12 samples)
[2025-12-02 01:21:33] 2025-12-02 00:21:01,506 | INFO     | ..............................
[2025-12-02 01:21:33] 2025-12-02 00:21:01,506 | INFO     | . Timing measurements:
[2025-12-02 01:21:33] 2025-12-02 00:21:01,506 | INFO     | . get job = 0 s
[2025-12-02 01:21:33] 2025-12-02 00:21:01,506 | INFO     | . initial setup = 1 s
[2025-12-02 01:21:33] 2025-12-02 00:21:01,506 | INFO     | . payload setup = 2 s
[2025-12-02 01:21:33] 2025-12-02 00:21:01,506 | INFO     | . stage-in = 0 s
[2025-12-02 01:21:33] 2025-12-02 00:21:01,506 | INFO     | . payload execution = 16055 s
[2025-12-02 01:21:33] 2025-12-02 00:21:01,506 | INFO     | . stage-out = 1 s
[2025-12-02 01:21:33] 2025-12-02 00:21:01,506 | INFO     | . log creation = 0 s
[2025-12-02 01:21:33] 2025-12-02 00:21:01,506 | INFO     | ..............................
[2025-12-02 01:21:33] 2025-12-02 00:21:01,554 | INFO     | 
[2025-12-02 01:21:33] 2025-12-02 00:21:01,554 | INFO     | job summary report
[2025-12-02 01:21:33] 2025-12-02 00:21:01,554 | INFO     | --------------------------------------------------
[2025-12-02 01:21:33] 2025-12-02 00:21:01,554 | INFO     | PanDA job id: 6893848744
[2025-12-02 01:21:33] 2025-12-02 00:21:01,554 | INFO     | task id: 47523449
[2025-12-02 01:21:33] 2025-12-02 00:21:01,554 | INFO     | errors: (none)
[2025-12-02 01:21:33] 2025-12-02 00:21:01,554 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 01:21:33] 2025-12-02 00:21:01,554 | INFO     | pilot state: finished 
[2025-12-02 01:21:33] 2025-12-02 00:21:01,554 | INFO     | transexitcode: 0
[2025-12-02 01:21:33] 2025-12-02 00:21:01,554 | INFO     | exeerrorcode: 0
[2025-12-02 01:21:33] 2025-12-02 00:21:01,554 | INFO     | exeerrordiag: 
[2025-12-02 01:21:33] 2025-12-02 00:21:01,554 | INFO     | exitcode: 0
[2025-12-02 01:21:33] 2025-12-02 00:21:01,554 | INFO     | exitmsg: OK
[2025-12-02 01:21:33] 2025-12-02 00:21:01,554 | INFO     | cpuconsumptiontime: 120611 s
[2025-12-02 01:21:33] 2025-12-02 00:21:01,554 | INFO     | nevents: 1000
[2025-12-02 01:21:33] 2025-12-02 00:21:01,555 | INFO     | neventsw: 0
[2025-12-02 01:21:33] 2025-12-02 00:21:01,555 | INFO     | pid: 5678
[2025-12-02 01:21:33] 2025-12-02 00:21:01,555 | INFO     | pgrp: 5678
[2025-12-02 01:21:33] 2025-12-02 00:21:01,555 | INFO     | corecount: 8
[2025-12-02 01:21:33] 2025-12-02 00:21:01,555 | INFO     | event service: False
[2025-12-02 01:21:33] 2025-12-02 00:21:01,555 | INFO     | sizes: {0: 2284441, 2: 2284703, 11: 2284731, 16060: 2316939, 16063: 2325963, 16065: 2326019, 16066: 2326393}
[2025-12-02 01:21:33] 2025-12-02 00:21:01,555 | INFO     | --------------------------------------------------
[2025-12-02 01:21:33] 2025-12-02 00:21:01,555 | INFO     | 
[2025-12-02 01:21:33] 2025-12-02 00:21:01,555 | INFO     | executing command: ls -lF /tmp/job_10941492/atlas/pilot/slots/0
[2025-12-02 01:21:33] 2025-12-02 00:21:01,564 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 01:21:33] 2025-12-02 00:21:01,564 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 01:21:33] 2025-12-02 00:21:01,564 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 01:21:33] 2025-12-02 00:21:01,564 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 01:21:33] 2025-12-02 00:21:01,564 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 01:21:33] 2025-12-02 00:21:01,564 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 01:21:33] 2025-12-02 00:21:01,564 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 01:21:33] 2025-12-02 00:21:01,564 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 01:21:33] 2025-12-02 00:21:01,564 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 01:21:33] 2025-12-02 00:21:01,564 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 01:21:33] 2025-12-02 00:21:01,564 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 01:21:33] 2025-12-02 00:21:01,565 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 01:21:33] 2025-12-02 00:21:01,565 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 01:21:33] 2025-12-02 00:21:01,565 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 01:21:33] 2025-12-02 00:21:01,565 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 01:21:33] 2025-12-02 00:21:01,565 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 01:21:33] 2025-12-02 00:21:01,565 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 01:21:33] 2025-12-02 00:21:01,565 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 01:21:33] 2025-12-02 00:21:01,565 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 01:21:33] 2025-12-02 00:21:01,565 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 01:21:33] 2025-12-02 00:21:01,565 | INFO     | job 6893848744 has completed (purged errors)
[2025-12-02 01:21:33] 2025-12-02 00:21:01,565 | INFO     | overall cleanup function is called
[2025-12-02 01:21:33] 2025-12-02 00:21:02,572 | INFO     | --- collectZombieJob: --- 10, [5678]
[2025-12-02 01:21:33] 2025-12-02 00:21:02,572 | INFO     | zombie collector waiting for pid 5678
[2025-12-02 01:21:33] 2025-12-02 00:21:02,572 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 01:21:33] 2025-12-02 00:21:02,572 | INFO     | collected zombie processes
[2025-12-02 01:21:33] 2025-12-02 00:21:02,572 | INFO     | will attempt to kill all subprocesses of pid=5678
[2025-12-02 01:21:33] 2025-12-02 00:21:02,670 | INFO     | process IDs to be killed: [5678] (in reverse order)
[2025-12-02 01:21:33] 2025-12-02 00:21:02,703 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 01:21:33] 2025-12-02 00:21:02,704 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 01:21:33] 2025-12-02 00:21:02,707 | INFO     | did not find any defunct processes belonging to 5678
[2025-12-02 01:21:33] 2025-12-02 00:21:02,710 | INFO     | did not find any defunct processes belonging to 5678
[2025-12-02 01:21:33] 2025-12-02 00:21:02,711 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 01:21:33] 2025-12-02 00:21:02,711 | INFO     | ready for new job
[2025-12-02 01:21:33] 2025-12-02 00:21:02,711 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 01:21:33] 2025-12-02 00:21:02,712 | INFO     | ***************************************
[2025-12-02 01:21:33] 2025-12-02 00:21:02,712 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 01:21:33] 2025-12-02 00:21:02,712 | INFO     | ***************************************
[2025-12-02 01:21:33] 2025-12-02 00:21:02,712 | INFO     | 
[2025-12-02 01:21:33] 2025-12-02 00:21:02,726 | INFO     | architecture information:
[2025-12-02 01:21:33] 2025-12-02 00:21:02,726 | INFO     | executing command: cat /etc/os-release
[2025-12-02 01:21:33] 2025-12-02 00:21:02,732 | INFO     | cat /etc/os-release:
[2025-12-02 01:21:33] NAME="CentOS Linux"
[2025-12-02 01:21:33] VERSION="7 (Core)"
[2025-12-02 01:21:33] ID="centos"
[2025-12-02 01:21:33] ID_LIKE="rhel fedora"
[2025-12-02 01:21:33] VERSION_ID="7"
[2025-12-02 01:21:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 01:21:33] ANSI_COLOR="0;31"
[2025-12-02 01:21:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 01:21:33] HOME_URL="https://www.centos.org/"
[2025-12-02 01:21:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 01:21:33] 
[2025-12-02 01:21:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 01:21:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 01:21:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 01:21:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 01:21:33] 
[2025-12-02 01:21:33] 2025-12-02 00:21:02,732 | INFO     | ***************************************
[2025-12-02 01:21:33] 2025-12-02 00:21:03,235 | INFO     | executing command: df -mP /tmp/job_10941492/atlas/pilot/slots/0
[2025-12-02 01:21:33] 2025-12-02 00:21:03,241 | INFO     | sufficient remaining disk space (223902433280 B)
[2025-12-02 01:21:33] 2025-12-02 00:21:03,241 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 01:21:33] 2025-12-02 00:21:03,241 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 01:21:33] 2025-12-02 00:21:03,241 | INFO     | update_server=False
[2025-12-02 01:21:33] 2025-12-02 00:21:03,241 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 01:21:33] 2025-12-02 00:21:03,241 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 01:21:33] 2025-12-02 00:21:03,323 | INFO     | all payload control threads have been joined
[2025-12-02 01:21:33] 2025-12-02 00:21:03,384 | INFO     | all data control threads have been joined
[2025-12-02 01:21:33] 2025-12-02 00:21:03,396 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 01:21:33] 2025-12-02 00:21:03,702 | INFO     | all job control threads have been joined
[2025-12-02 01:21:33] 2025-12-02 00:21:03,725 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 01:21:33] 2025-12-02 00:21:03,725 | INFO     | aborting loop
[2025-12-02 01:21:33] 2025-12-02 00:21:04,245 | INFO     | [job] queue monitor thread has finished
[2025-12-02 01:21:33] 2025-12-02 00:21:04,246 | INFO     | [job] retrieve thread has finished
[2025-12-02 01:21:33] 2025-12-02 00:21:04,329 | INFO     | [payload] control thread has finished
[2025-12-02 01:21:33] 2025-12-02 00:21:04,389 | INFO     | [data] control thread has finished
[2025-12-02 01:21:33] 2025-12-02 00:21:04,458 | INFO     | [payload] validate_post thread has finished
[2025-12-02 01:21:33] 2025-12-02 00:21:04,707 | INFO     | [job] control thread has finished
[2025-12-02 01:21:33] 2025-12-02 00:21:04,730 | INFO     | [job] job monitor thread has finished
[2025-12-02 01:21:33] 2025-12-02 00:21:04,965 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 01:21:33] 2025-12-02 00:21:05,078 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 01:21:33] 2025-12-02 00:21:05,199 | INFO     | [job] validate thread has finished
[2025-12-02 01:21:33] 2025-12-02 00:21:05,401 | INFO     | [data] copytool_out thread has finished
[2025-12-02 01:21:33] 2025-12-02 00:21:05,415 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 01:21:33] 2025-12-02 00:21:05,415 | INFO     | [data] copytool_in thread has finished
[2025-12-02 01:21:33] 2025-12-02 00:21:05,525 | INFO     | [payload] failed_post thread has finished
[2025-12-02 01:21:33] 2025-12-02 00:21:05,629 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 01:21:33] 2025-12-02 00:21:09,631 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 01:21:33] 2025-12-02 00:21:13,501 | INFO     | job.realtimelogging is not enabled
[2025-12-02 01:21:33] 2025-12-02 00:21:14,506 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 01:21:33] 2025-12-02 00:21:28,567 | INFO     | [monitor] cgroup control has ended
[2025-12-02 01:21:33] 2025-12-02 00:21:28,612 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-12-02 01:21:33] 2025-12-02 00:21:32,085 | INFO     | 16081s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-02 01:21:33] 2025-12-02 00:21:33,216 | INFO     | PID=31093 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 01:21:33] 2025-12-02 00:21:33,216 | INFO     | .. there are 2 such processes running
[2025-12-02 01:21:33] 2025-12-02 00:21:33,217 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 01:21:33] 2025-12-02 00:21:33,217 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 01:21:33] 2025-12-02 00:21:33,217 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 01:21:33] 2025-12-02 00:21:33,217 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 01:21:33] 2025-12-02 00:21:33,217 | INFO     | [monitor] control thread has ended
[2025-12-02 01:21:33] 2025-12-02 00:21:33,638 | INFO     | all workflow threads have been joined
[2025-12-02 01:21:33] 2025-12-02 00:21:33,638 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 01:21:33] 2025-12-02 00:21:33,638 | INFO     | traces error code: 0
[2025-12-02 01:21:33] 2025-12-02 00:21:33,638 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 01:21:33] 2025-12-02 00:21:33,693 [wrapper] ==== pilot stdout END ====
[2025-12-02 01:21:33] 2025-12-02 00:21:33,694 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 01:21:33] 2025-12-02 00:21:33,696 [wrapper] pilotpid: 31093
[2025-12-02 01:21:33] 2025-12-02 00:21:33,697 [wrapper] Pilot exit status: 0
[2025-12-02 01:21:33] 2025-12-02 00:21:33,702 [wrapper] pandaids: 6893848744
[2025-12-02 01:21:33] 2025-12-02 00:21:33,723 [wrapper] cleanup supervisor_pilot 18509 31094
[2025-12-02 01:21:33] 2025-12-02 00:21:33,724 [wrapper] Test setup, not cleaning
[2025-12-02 01:21:33] 2025-12-02 00:21:33,725 [wrapper] apfmon messages muted
[2025-12-02 01:21:33] 2025-12-02 00:21:33,726 [wrapper] ==== wrapper stdout END ====
[2025-12-02 01:21:33] 2025-12-02 00:21:33,727 [wrapper] ==== wrapper stderr END ====
[2025-12-02 01:21:33]  *** Error codes and diagnostics ***
[2025-12-02 01:21:33]     "exeErrorCode": 0,
[2025-12-02 01:21:33]     "exeErrorDiag": "",
[2025-12-02 01:21:33]     "pilotErrorCode": 0,
[2025-12-02 01:21:33]     "pilotErrorDiag": "",
[2025-12-02 01:21:33]  *** Listing of results directory ***
[2025-12-02 01:21:33] total 1304448
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user    576529 Nov 20 11:06 pilot3.tar.gz
[2025-12-02 01:21:33] -rwx------ 1 mf493845 unix-user     36292 Nov 20 11:54 runpilot2-wrapper.sh
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user      5112 Nov 20 11:54 queuedata.json
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user       100 Dec  1 19:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 01:21:33] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  1 19:07 run_atlas
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user       105 Dec  1 19:07 job.xml
[2025-12-02 01:21:33] -rw-r--r-- 2 mf493845 unix-user 412503205 Dec  1 20:52 EVNT.47493127._000291.pool.root.1
[2025-12-02 01:21:33] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  1 20:52 start_atlas.sh
[2025-12-02 01:21:33] drwxrwx--x 2 mf493845 unix-user       100 Dec  1 20:52 shared
[2025-12-02 01:21:33] -rw-r--r-- 2 mf493845 unix-user    590100 Dec  1 20:52 input.tar.gz
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user      6391 Dec  1 20:52 init_data.xml
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user         0 Dec  1 20:52 boinc_setup_complete
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user      8192 Dec  1 20:52 boinc_mmap_file
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user         0 Dec  1 20:52 boinc_lockfile
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user      2786 Dec  1 20:52 pandaJob.out
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user    992004 Dec  1 20:53 agis_schedconf.cvmfs.json
[2025-12-02 01:21:33] drwx------ 5 mf493845 unix-user       440 Dec  1 20:53 pilot3
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user 911592364 Dec  2 01:20 HITS.47523449._002907.pool.root.1
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user      1031 Dec  2 01:20 memory_monitor_summary.json
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user   1516240 Dec  2 01:20 agis_ddmendpoints.agis.ALL.json
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user   1565259 Dec  2 01:20 log.47523449._002907.job.log.tgz.1
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user        95 Dec  2 01:21 pilot_heartbeat.json
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user      8590 Dec  2 01:21 heartbeat.json
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user      5023 Dec  2 01:21 pilotlog.txt
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user   2319425 Dec  2 01:21 log.47523449._002907.job.log.1
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user       353 Dec  2 01:21 output.list
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user       620 Dec  2 01:21 runtime_log
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user   3901440 Dec  2 01:21 result.tar.gz
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user       651 Dec  2 01:21 VFJKDmgUHg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzYHKDmWaTX0m.diag
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user      9221 Dec  2 01:21 runtime_log.err
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user     21657 Dec  2 01:21 stderr.txt
[2025-12-02 01:21:33] HITS file was successfully produced:
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user 911592364 Dec  2 01:20 shared/HITS.pool.root.1
[2025-12-02 01:21:33]  *** Contents of shared directory: ***
[2025-12-02 01:21:33] total 1297472
[2025-12-02 01:21:33] -rw-r--r-- 2 mf493845 unix-user 412503205 Dec  1 20:52 ATLAS.root_0
[2025-12-02 01:21:33] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  1 20:52 start_atlas.sh
[2025-12-02 01:21:33] -rw-r--r-- 2 mf493845 unix-user    590100 Dec  1 20:52 input.tar.gz
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user 911592364 Dec  2 01:20 HITS.pool.root.1
[2025-12-02 01:21:33] -rw------- 1 mf493845 unix-user   3901440 Dec  2 01:21 result.tar.gz
01:21:35 (27219): run_atlas exited; CPU time 120813.991705
01:21:35 (27219): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN