Stderr output

<core_client_version>7.23.1</core_client_version>
<![CDATA[
<stderr_txt>
19:54:13 (3228746): wrapper (7.7.26015): starting
19:54:13 (3228746): wrapper: running run_atlas (--nthreads 10)
[2025-12-02 19:54:13] Arguments: --nthreads 10
[2025-12-02 19:54:13] Threads: 10
[2025-12-02 19:54:13] Checking for CVMFS
[2025-12-02 19:54:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-02 19:54:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-02 19:54:13] Running cvmfs_config stat atlas.cern.ch
[2025-12-02 19:54:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-02 19:54:13] 2.13.3.0 4125 2174 69448 153579 0 112 3574041 4096000 12428 130560 0 331818181 99.998 761703 652 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2025-12-02 19:54:13] CVMFS is ok
[2025-12-02 19:54:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-02 19:54:13] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-02 19:54:13] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-02 19:54:13] Further information can be found at the LHC@home message board.
[2025-12-02 19:54:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-02 19:54:13] Checking for apptainer binary...
[2025-12-02 19:54:13] apptainer is not installed, using version from CVMFS
[2025-12-02 19:54:13] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-02 19:54:14] 7950x-linux
[2025-12-02 19:54:14] apptainer works
[2025-12-02 19:54:14] Set ATHENA_PROC_NUMBER=10
[2025-12-02 19:54:14] Set ATHENA_CORE_NUMBER=10
[2025-12-02 19:54:14] Starting ATLAS job with PandaID=6900296032
[2025-12-02 19:54:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc523/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-03 12:38:40]  *** The last 200 lines of the pilot log: ***
[2025-12-03 12:38:40] 2025-12-03 20:38:08,324 | INFO     | monitor loop #4367: job 0:6900296032 is in state 'finished'
[2025-12-03 12:38:40] 2025-12-03 20:38:08,324 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-03 12:38:40] 2025-12-03 20:38:08,729 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-03 12:38:40] 2025-12-03 20:38:08,732 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4000.13328125
[2025-12-03 12:38:40] 2025-12-03 20:38:08,736 | INFO     | using path: /var/lib/multiboinc/boinc523/slots/3/PanDA_Pilot-6900296032/memory_monitor_summary.json (trf name=prmon)
[2025-12-03 12:38:40] 2025-12-03 20:38:08,736 | INFO     | extracted standard info from prmon json
[2025-12-03 12:38:40] 2025-12-03 20:38:08,736 | INFO     | extracted standard memory fields from prmon json
[2025-12-03 12:38:40] 2025-12-03 20:38:08,736 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-03 12:38:40] 2025-12-03 20:38:08,744 | INFO     | fitting pss+swap vs Time
[2025-12-03 12:38:40] 2025-12-03 20:38:08,745 | INFO     | sum of square deviations: 298146308278.0
[2025-12-03 12:38:40] 2025-12-03 20:38:08,757 | INFO     | sum of deviations: 2519886307599.9995
[2025-12-03 12:38:40] 2025-12-03 20:38:08,757 | INFO     | mean x: 1764764175.0
[2025-12-03 12:38:40] 2025-12-03 20:38:08,757 | INFO     | mean y: 3148484.1529888553
[2025-12-03 12:38:40] 2025-12-03 20:38:08,757 | INFO     | intersect: -14912364327.023586
[2025-12-03 12:38:40] 2025-12-03 20:38:08,758 | INFO     | chi2: 6.203922866448913
[2025-12-03 12:38:40] 2025-12-03 20:38:08,758 | INFO     | sum of square deviations: 293638121425.5
[2025-12-03 12:38:40] 2025-12-03 20:38:08,770 | INFO     | sum of deviations: 2805628432560.5005
[2025-12-03 12:38:40] 2025-12-03 20:38:08,770 | INFO     | mean x: 1764764022.5
[2025-12-03 12:38:40] 2025-12-03 20:38:08,770 | INFO     | mean y: 3158141.3757637474
[2025-12-03 12:38:40] 2025-12-03 20:38:08,770 | INFO     | intersect: -16858658349.784578
[2025-12-03 12:38:40] 2025-12-03 20:38:08,771 | INFO     | chi2: 3.890471174288865
[2025-12-03 12:38:40] 2025-12-03 20:38:08,771 | INFO     | current chi2=3.890471174288865 (change=37.290142736482046 %)
[2025-12-03 12:38:40] 2025-12-03 20:38:08,772 | INFO     | sum of square deviations: 289175609848.0
[2025-12-03 12:38:40] 2025-12-03 20:38:08,785 | INFO     | sum of deviations: 2814355498241.0005
[2025-12-03 12:38:40] 2025-12-03 20:38:08,785 | INFO     | mean x: 1764763870.0
[2025-12-03 12:38:40] 2025-12-03 20:38:08,785 | INFO     | mean y: 3158435.927328557
[2025-12-03 12:38:40] 2025-12-03 20:38:08,785 | INFO     | intersect: -17172124442.328585
[2025-12-03 12:38:40] 2025-12-03 20:38:08,786 | INFO     | chi2: 3.813918981798534
[2025-12-03 12:38:40] 2025-12-03 20:38:08,786 | INFO     | current chi2=3.813918981798534 (change=1.9676843513517006 %)
[2025-12-03 12:38:40] 2025-12-03 20:38:08,786 | INFO     | right removable region: 976
[2025-12-03 12:38:40] 2025-12-03 20:38:08,787 | INFO     | sum of square deviations: 293638121425.5
[2025-12-03 12:38:40] 2025-12-03 20:38:08,797 | INFO     | sum of deviations: 2144194690552.0007
[2025-12-03 12:38:40] 2025-12-03 20:38:08,797 | INFO     | mean x: 1764764327.5
[2025-12-03 12:38:40] 2025-12-03 20:38:08,797 | INFO     | mean y: 3161188.4887983706
[2025-12-03 12:38:40] 2025-12-03 20:38:08,797 | INFO     | intersect: -12883443189.482351
[2025-12-03 12:38:40] 2025-12-03 20:38:08,798 | INFO     | chi2: 3.116621699773196
[2025-12-03 12:38:40] 2025-12-03 20:38:08,798 | INFO     | current chi2=3.116621699773196 (change=49.763693603799894 %)
[2025-12-03 12:38:40] 2025-12-03 20:38:08,798 | INFO     | sum of square deviations: 289175609848.0
[2025-12-03 12:38:40] 2025-12-03 20:38:08,809 | INFO     | sum of deviations: 2007122006023.0002
[2025-12-03 12:38:40] 2025-12-03 20:38:08,809 | INFO     | mean x: 1764764480.0
[2025-12-03 12:38:40] 2025-12-03 20:38:08,809 | INFO     | mean y: 3165867.9938587514
[2025-12-03 12:38:40] 2025-12-03 20:38:08,809 | INFO     | intersect: -12245784259.984007
[2025-12-03 12:38:40] 2025-12-03 20:38:08,810 | INFO     | chi2: 2.7357087785971816
[2025-12-03 12:38:40] 2025-12-03 20:38:08,810 | INFO     | current chi2=2.7357087785971816 (change=12.221981294801818 %)
[2025-12-03 12:38:40] 2025-12-03 20:38:08,810 | INFO     | left removable region: 20
[2025-12-03 12:38:40] 2025-12-03 20:38:08,810 | INFO     | sum of square deviations: 270926586755.0
[2025-12-03 12:38:40] 2025-12-03 20:38:08,820 | INFO     | sum of deviations: 2140220107604.5
[2025-12-03 12:38:40] 2025-12-03 20:38:08,820 | INFO     | mean x: 1764764449.5
[2025-12-03 12:38:40] 2025-12-03 20:38:08,820 | INFO     | mean y: 3181536.580543933
[2025-12-03 12:38:40] 2025-12-03 20:38:08,820 | INFO     | intersect: -13937806703.975664
[2025-12-03 12:38:40] 2025-12-03 20:38:08,821 | INFO     | chi2: 0.21750470114312212
[2025-12-03 12:38:40] 2025-12-03 20:38:08,821 | INFO     | current memory leak: 7.90 B/s (using 956 data points, chi2=0.22)
[2025-12-03 12:38:40] 2025-12-03 20:38:08,822 | INFO     | could have reported an average CPU frequency of 4000 MHz (37 samples)
[2025-12-03 12:38:40] 2025-12-03 20:38:08,822 | INFO     | ..............................
[2025-12-03 12:38:40] 2025-12-03 20:38:08,822 | INFO     | . Timing measurements:
[2025-12-03 12:38:40] 2025-12-03 20:38:08,822 | INFO     | . get job = 0 s
[2025-12-03 12:38:40] 2025-12-03 20:38:08,822 | INFO     | . initial setup = 6 s
[2025-12-03 12:38:40] 2025-12-03 20:38:08,822 | INFO     | . payload setup = 7 s
[2025-12-03 12:38:40] 2025-12-03 20:38:08,822 | INFO     | . stage-in = 0 s
[2025-12-03 12:38:40] 2025-12-03 20:38:08,822 | INFO     | . payload execution = 60181 s
[2025-12-03 12:38:40] 2025-12-03 20:38:08,822 | INFO     | . stage-out = 3 s
[2025-12-03 12:38:40] 2025-12-03 20:38:08,822 | INFO     | . log creation = 0 s
[2025-12-03 12:38:40] 2025-12-03 20:38:08,822 | INFO     | ..............................
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | 
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | job summary report
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | --------------------------------------------------
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | PanDA job id: 6900296032
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | task id: 47556173
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | errors: (none)
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | pilot state: finished 
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | transexitcode: 0
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | exeerrorcode: 0
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | exeerrordiag: 
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | exitcode: 0
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | exitmsg: OK
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | cpuconsumptiontime: 138725 s
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | nevents: 1000
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | neventsw: 0
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | pid: 3241397
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | pgrp: 3241397
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | corecount: 10
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | event service: False
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | sizes: {0: 2284330, 5: 2284592, 11: 2284648, 60192: 2337160, 60196: 2346238, 60201: 2346428}
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | --------------------------------------------------
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | 
[2025-12-03 12:38:40] 2025-12-03 20:38:08,876 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc523/slots/3
[2025-12-03 12:38:40] 2025-12-03 20:38:08,922 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-03 12:38:40] 2025-12-03 20:38:08,922 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-03 12:38:40] 2025-12-03 20:38:08,922 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-03 12:38:40] 2025-12-03 20:38:08,922 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-03 12:38:40] 2025-12-03 20:38:08,922 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-03 12:38:40] 2025-12-03 20:38:08,922 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-03 12:38:40] 2025-12-03 20:38:08,922 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-03 12:38:40] 2025-12-03 20:38:08,922 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-03 12:38:40] 2025-12-03 20:38:08,922 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-03 12:38:40] 2025-12-03 20:38:08,923 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-03 12:38:40] 2025-12-03 20:38:08,923 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-03 12:38:40] 2025-12-03 20:38:08,923 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-03 12:38:40] 2025-12-03 20:38:08,923 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-03 12:38:40] 2025-12-03 20:38:08,923 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-03 12:38:40] 2025-12-03 20:38:08,923 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-03 12:38:40] 2025-12-03 20:38:08,923 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-03 12:38:40] 2025-12-03 20:38:08,923 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-03 12:38:40] 2025-12-03 20:38:08,923 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-03 12:38:40] 2025-12-03 20:38:08,923 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-03 12:38:40] 2025-12-03 20:38:08,923 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-03 12:38:40] 2025-12-03 20:38:08,923 | INFO     | job 6900296032 has completed (purged errors)
[2025-12-03 12:38:40] 2025-12-03 20:38:08,923 | INFO     | overall cleanup function is called
[2025-12-03 12:38:40] 2025-12-03 20:38:09,937 | INFO     | --- collectZombieJob: --- 10, [3241397]
[2025-12-03 12:38:40] 2025-12-03 20:38:09,937 | INFO     | zombie collector waiting for pid 3241397
[2025-12-03 12:38:40] 2025-12-03 20:38:09,937 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-03 12:38:40] 2025-12-03 20:38:09,937 | INFO     | collected zombie processes
[2025-12-03 12:38:40] 2025-12-03 20:38:09,937 | INFO     | will attempt to kill all subprocesses of pid=3241397
[2025-12-03 12:38:40] 2025-12-03 20:38:10,191 | INFO     | process IDs to be killed: [3241397] (in reverse order)
[2025-12-03 12:38:40] 2025-12-03 20:38:10,306 | WARNING  | found no corresponding commands to process id(s)
[2025-12-03 12:38:40] 2025-12-03 20:38:10,307 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-03 12:38:40] 2025-12-03 20:38:10,312 | INFO     | did not find any defunct processes belonging to 3241397
[2025-12-03 12:38:40] 2025-12-03 20:38:10,316 | INFO     | did not find any defunct processes belonging to 3241397
[2025-12-03 12:38:40] 2025-12-03 20:38:10,317 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-03 12:38:40] 2025-12-03 20:38:10,317 | INFO     | ready for new job
[2025-12-03 12:38:40] 2025-12-03 20:38:10,317 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-03 12:38:40] 2025-12-03 20:38:10,321 | INFO     | ***************************************
[2025-12-03 12:38:40] 2025-12-03 20:38:10,321 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-03 12:38:40] 2025-12-03 20:38:10,321 | INFO     | ***************************************
[2025-12-03 12:38:40] 2025-12-03 20:38:10,321 | INFO     | 
[2025-12-03 12:38:40] 2025-12-03 20:38:10,322 | INFO     | architecture information:
[2025-12-03 12:38:40] 2025-12-03 20:38:10,323 | INFO     | executing command: cat /etc/os-release
[2025-12-03 12:38:40] 2025-12-03 20:38:10,339 | INFO     | cat /etc/os-release:
[2025-12-03 12:38:40] NAME="CentOS Linux"
[2025-12-03 12:38:40] VERSION="7 (Core)"
[2025-12-03 12:38:40] ID="centos"
[2025-12-03 12:38:40] ID_LIKE="rhel fedora"
[2025-12-03 12:38:40] VERSION_ID="7"
[2025-12-03 12:38:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-03 12:38:40] ANSI_COLOR="0;31"
[2025-12-03 12:38:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-03 12:38:40] HOME_URL="https://www.centos.org/"
[2025-12-03 12:38:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-03 12:38:40] 
[2025-12-03 12:38:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-03 12:38:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-03 12:38:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-03 12:38:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-03 12:38:40] 
[2025-12-03 12:38:40] 2025-12-03 20:38:10,339 | INFO     | ***************************************
[2025-12-03 12:38:40] 2025-12-03 20:38:10,842 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc523/slots/3
[2025-12-03 12:38:40] 2025-12-03 20:38:10,859 | INFO     | sufficient remaining disk space (164330733568 B)
[2025-12-03 12:38:40] 2025-12-03 20:38:10,859 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-03 12:38:40] 2025-12-03 20:38:10,859 | INFO     | current server update state: UPDATING_FINAL
[2025-12-03 12:38:40] 2025-12-03 20:38:10,859 | INFO     | update_server=False
[2025-12-03 12:38:40] 2025-12-03 20:38:10,859 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-03 12:38:40] 2025-12-03 20:38:10,860 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-03 12:38:40] 2025-12-03 20:38:10,864 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-03 12:38:40] 2025-12-03 20:38:10,860 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-03 12:38:40] 2025-12-03 20:38:11,287 | INFO     | all payload control threads have been joined
[2025-12-03 12:38:40] 2025-12-03 20:38:11,651 | INFO     | [monitor] cgroup control has ended
[2025-12-03 12:38:40] 2025-12-03 20:38:11,837 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-03 12:38:40] 2025-12-03 20:38:11,837 | INFO     | aborting loop
[2025-12-03 12:38:40] 2025-12-03 20:38:11,865 | INFO     | [job] retrieve thread has finished
[2025-12-03 12:38:40] 2025-12-03 20:38:11,869 | INFO     | [job] queue monitor thread has finished
[2025-12-03 12:38:40] 2025-12-03 20:38:11,891 | INFO     | all data control threads have been joined
[2025-12-03 12:38:40] 2025-12-03 20:38:11,939 | INFO     | [job] validate thread has finished
[2025-12-03 12:38:40] 2025-12-03 20:38:12,173 | INFO     | all job control threads have been joined
[2025-12-03 12:38:40] 2025-12-03 20:38:12,198 | INFO     | [job] create_data_payload thread has finished
[2025-12-03 12:38:40] 2025-12-03 20:38:12,201 | INFO     | [payload] execute_payloads thread has finished
[2025-12-03 12:38:40] 2025-12-03 20:38:12,247 | INFO     | [payload] validate_pre thread has finished
[2025-12-03 12:38:40] 2025-12-03 20:38:12,292 | INFO     | [payload] control thread has finished
[2025-12-03 12:38:40] 2025-12-03 20:38:12,668 | INFO     | [payload] failed_post thread has finished
[2025-12-03 12:38:40] 2025-12-03 20:38:12,842 | INFO     | [job] job monitor thread has finished
[2025-12-03 12:38:40] 2025-12-03 20:38:12,869 | INFO     | [data] copytool_out thread has finished
[2025-12-03 12:38:40] 2025-12-03 20:38:12,896 | INFO     | [data] control thread has finished
[2025-12-03 12:38:40] 2025-12-03 20:38:12,983 | INFO     | [payload] validate_post thread has finished
[2025-12-03 12:38:40] 2025-12-03 20:38:13,178 | INFO     | [job] control thread has finished
[2025-12-03 12:38:40] 2025-12-03 20:38:13,300 | INFO     | [data] copytool_in thread has finished
[2025-12-03 12:38:40] 2025-12-03 20:38:14,869 | INFO     | [data] queue_monitor thread has finished
[2025-12-03 12:38:40] 2025-12-03 20:38:21,727 | INFO     | job.realtimelogging is not enabled
[2025-12-03 12:38:40] 2025-12-03 20:38:22,732 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-03 12:38:40] 2025-12-03 20:38:24,835 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123759940720448)>', '<ExcThread(monitor, started 123759583278848)>']
[2025-12-03 12:38:40] 2025-12-03 20:38:29,860 | INFO     | all workflow threads have been joined
[2025-12-03 12:38:40] 2025-12-03 20:38:29,860 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-03 12:38:40] 2025-12-03 20:38:29,860 | INFO     | traces error code: 0
[2025-12-03 12:38:40] 2025-12-03 20:38:29,860 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-03 12:38:40] 2025-12-03 20:38:40,499 | INFO     | PID=3232591 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-03 12:38:40] 2025-12-03 20:38:40,499 | INFO     | .. there are 10 such processes running
[2025-12-03 12:38:40] 2025-12-03 20:38:40,500 | INFO     | found 0 job(s) in 20 queues
[2025-12-03 12:38:40] 2025-12-03 20:38:40,500 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-03 12:38:40] 2025-12-03 20:38:40,500 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-03 12:38:40] 2025-12-03 20:38:40,500 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-03 12:38:40] 2025-12-03 20:38:40,500 | INFO     | [monitor] control thread has ended
[2025-12-03 12:38:40] 2025-12-03 20:38:40,583 [wrapper] ==== pilot stdout END ====
[2025-12-03 12:38:40] 2025-12-03 20:38:40,585 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-03 12:38:40] 2025-12-03 20:38:40,589 [wrapper] pilotpid: 3232591
[2025-12-03 12:38:40] 2025-12-03 20:38:40,591 [wrapper] Pilot exit status: 0
[2025-12-03 12:38:40] 2025-12-03 20:38:40,602 [wrapper] pandaids: 6900296032
[2025-12-03 12:38:40] 2025-12-03 20:38:40,640 [wrapper] cleanup supervisor_pilot  296024 3232592
[2025-12-03 12:38:40] 2025-12-03 20:38:40,646 [wrapper] Test setup, not cleaning
[2025-12-03 12:38:40] 2025-12-03 20:38:40,648 [wrapper] apfmon messages muted
[2025-12-03 12:38:40] 2025-12-03 20:38:40,649 [wrapper] ==== wrapper stdout END ====
[2025-12-03 12:38:40] 2025-12-03 20:38:40,651 [wrapper] ==== wrapper stderr END ====
[2025-12-03 12:38:40]  *** Error codes and diagnostics ***
[2025-12-03 12:38:40]     "exeErrorCode": 0,
[2025-12-03 12:38:40]     "exeErrorDiag": "",
[2025-12-03 12:38:40]     "pilotErrorCode": 0,
[2025-12-03 12:38:40]     "pilotErrorDiag": "",
[2025-12-03 12:38:40]  *** Listing of results directory ***
[2025-12-03 12:38:40] total 1331144
[2025-12-03 12:38:40] -rw-r--r-- 1 root root    576529 Nov 27 08:16 pilot3.tar.gz
[2025-12-03 12:38:40] -rwx------ 1 4871 1028     36292 Nov 27 08:20 runpilot2-wrapper.sh
[2025-12-03 12:38:40] -rw-r--r-- 1 root root      5112 Nov 27 08:22 queuedata.json
[2025-12-03 12:38:40] -rw-r--r-- 1 root root       100 Dec  2 19:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-03 12:38:40] -rwxr-xr-x 1 root root      7986 Dec  2 19:54 run_atlas
[2025-12-03 12:38:40] -rw-r--r-- 1 root root       105 Dec  2 19:54 job.xml
[2025-12-03 12:38:40] -rw-r--r-- 1 root root      7072 Dec  2 19:54 init_data.xml
[2025-12-03 12:38:40] -rw-r--r-- 2 root root 409533339 Dec  2 19:54 EVNT.47483658._003438.pool.root.1
[2025-12-03 12:38:40] drwxrwx--x 2 root root      4096 Dec  2 19:54 shared
[2025-12-03 12:38:40] -rw-r--r-- 2 root root    590101 Dec  2 19:54 input.tar.gz
[2025-12-03 12:38:40] -rw-r--r-- 2 root root     15847 Dec  2 19:54 start_atlas.sh
[2025-12-03 12:38:40] -rw-r--r-- 1 root root         0 Dec  2 19:54 boinc_lockfile
[2025-12-03 12:38:40] -rw-r--r-- 1 root root      2787 Dec  2 19:54 pandaJob.out
[2025-12-03 12:38:40] -rw------- 1 root root    989300 Dec  2 19:54 agis_schedconf.cvmfs.json
[2025-12-03 12:38:40] drwxr-xr-x 5  320  320      4096 Dec  2 19:54 pilot3
[2025-12-03 12:38:40] -rw-r--r-- 1 root root       533 Dec  3 12:30 boinc_task_state.xml
[2025-12-03 12:38:40] -rw------- 1 root root 927788697 Dec  3 12:37 HITS.47556173._003942.pool.root.1
[2025-12-03 12:38:40] -rw------- 1 root root      1051 Dec  3 12:37 memory_monitor_summary.json
[2025-12-03 12:38:40] -rw------- 1 root root   1516240 Dec  3 12:38 agis_ddmendpoints.agis.ALL.json
[2025-12-03 12:38:40] -rw------- 1 root root   2359649 Dec  3 12:38 log.47556173._003942.job.log.tgz.1
[2025-12-03 12:38:40] -rw------- 1 root root      8612 Dec  3 12:38 heartbeat.json
[2025-12-03 12:38:40] -rw------- 1 root root       823 Dec  3 12:38 pilotlog.txt
[2025-12-03 12:38:40] -rw------- 1 root root        95 Dec  3 12:38 pilot_heartbeat.json
[2025-12-03 12:38:40] -rw-r--r-- 1 root root      8192 Dec  3 12:38 boinc_mmap_file
[2025-12-03 12:38:40] -rw-r--r-- 1 root root        29 Dec  3 12:38 wrapper_checkpoint.txt
[2025-12-03 12:38:40] -rw------- 1 root root   8572151 Dec  3 12:38 log.47556173._003942.job.log.1
[2025-12-03 12:38:40] -rw------- 1 root root       353 Dec  3 12:38 output.list
[2025-12-03 12:38:40] -rw-r--r-- 1 root root       620 Dec  3 12:38 runtime_log
[2025-12-03 12:38:40] -rw------- 1 root root  10946560 Dec  3 12:38 result.tar.gz
[2025-12-03 12:38:40] -rw------- 1 root root       662 Dec  3 12:38 saILDmMuti8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmTtKKDmNS8zWm.diag
[2025-12-03 12:38:40] -rw-r--r-- 1 root root      9021 Dec  3 12:38 runtime_log.err
[2025-12-03 12:38:40] -rw-r--r-- 1 root root     21369 Dec  3 12:38 stderr.txt
[2025-12-03 12:38:40] HITS file was successfully produced:
[2025-12-03 12:38:40] -rw------- 1 root root 927788697 Dec  3 12:37 shared/HITS.pool.root.1
[2025-12-03 12:38:40]  *** Contents of shared directory: ***
[2025-12-03 12:38:40] total 1317276
[2025-12-03 12:38:40] -rw-r--r-- 2 root root 409533339 Dec  2 19:54 ATLAS.root_0
[2025-12-03 12:38:40] -rw-r--r-- 2 root root    590101 Dec  2 19:54 input.tar.gz
[2025-12-03 12:38:40] -rw-r--r-- 2 root root     15847 Dec  2 19:54 start_atlas.sh
[2025-12-03 12:38:40] -rw------- 1 root root 927788697 Dec  3 12:37 HITS.pool.root.1
[2025-12-03 12:38:40] -rw------- 1 root root  10946560 Dec  3 12:38 result.tar.gz
12:38:42 (3228746): run_atlas exited; CPU time 138828.974698
12:38:42 (3228746): called boinc_finish(0)

</stderr_txt>
]]>

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