Stderr output

<core_client_version>7.23.1</core_client_version>
<![CDATA[
<stderr_txt>
07:58:48 (79436): wrapper (7.7.26015): starting
07:58:48 (79436): wrapper: running run_atlas (--nthreads 10)
[2025-12-01 07:58:48] Arguments: --nthreads 10
[2025-12-01 07:58:48] Threads: 10
[2025-12-01 07:58:48] Checking for CVMFS
[2025-12-01 07:58:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 07:58:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 07:58:49] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 07:58:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 07:58:49] 2.13.3.0 4125 19 51732 153523 0 70 3933289 4096000 3809 130560 0 566459 99.697 224598 753 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2025-12-01 07:58:49] CVMFS is ok
[2025-12-01 07:58:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 07:58:49] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-01 07:58:49] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-01 07:58:49] Further information can be found at the LHC@home message board.
[2025-12-01 07:58:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 07:58:49] Checking for apptainer binary...
[2025-12-01 07:58:49] apptainer is not installed, using version from CVMFS
[2025-12-01 07:58:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 07:58:49] 7950x-linux
[2025-12-01 07:58:49] apptainer works
[2025-12-01 07:58:49] Set ATHENA_PROC_NUMBER=10
[2025-12-01 07:58:49] Set ATHENA_CORE_NUMBER=10
[2025-12-01 07:58:49] Starting ATLAS job with PandaID=6895232645
[2025-12-01 07:58:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc520/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 22:59:48]  *** The last 200 lines of the pilot log: ***
[2025-12-01 22:59:48] 2025-12-02 06:58:47,507 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 22:59:48] 2025-12-02 06:58:48,049 | INFO     | time since job start (53977s) is within the limit (172800.0s)
[2025-12-01 22:59:48] 2025-12-02 06:58:48,928 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-01 22:59:48] 2025-12-02 06:58:48,931 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4000.1382499999995
[2025-12-01 22:59:48] 2025-12-02 06:58:48,935 | INFO     | using path: /var/lib/multiboinc/boinc520/slots/2/PanDA_Pilot-6895232645/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 22:59:48] 2025-12-02 06:58:48,935 | INFO     | extracted standard info from prmon json
[2025-12-01 22:59:48] 2025-12-02 06:58:48,935 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 22:59:48] 2025-12-02 06:58:48,935 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 22:59:48] 2025-12-02 06:58:48,942 | INFO     | fitting pss+swap vs Time
[2025-12-01 22:59:48] 2025-12-02 06:58:48,943 | INFO     | sum of square deviations: 214935267170.0
[2025-12-01 22:59:48] 2025-12-02 06:58:48,951 | INFO     | sum of deviations: 1741770178097.0
[2025-12-01 22:59:48] 2025-12-02 06:58:48,951 | INFO     | mean x: 1764631742.0
[2025-12-01 22:59:48] 2025-12-02 06:58:48,951 | INFO     | mean y: 3734275.7254237286
[2025-12-01 22:59:48] 2025-12-02 06:58:48,952 | INFO     | intersect: -14296305843.367516
[2025-12-01 22:59:48] 2025-12-02 06:58:48,952 | INFO     | chi2: 5.1236208108832955
[2025-12-01 22:59:48] 2025-12-02 06:58:48,952 | INFO     | sum of square deviations: 211312836460.0
[2025-12-01 22:59:48] 2025-12-02 06:58:48,961 | INFO     | sum of deviations: 2056443685159.9998
[2025-12-01 22:59:48] 2025-12-02 06:58:48,961 | INFO     | mean x: 1764631589.5
[2025-12-01 22:59:48] 2025-12-02 06:58:48,961 | INFO     | mean y: 3747505.481818182
[2025-12-01 22:59:48] 2025-12-02 06:58:48,961 | INFO     | intersect: -17169205873.278236
[2025-12-01 22:59:48] 2025-12-02 06:58:48,962 | INFO     | chi2: 2.663463527801301
[2025-12-01 22:59:48] 2025-12-02 06:58:48,962 | INFO     | current chi2=2.663463527801301 (change=48.01599052483104 %)
[2025-12-01 22:59:48] 2025-12-02 06:58:48,962 | INFO     | sum of square deviations: 207731336750.0
[2025-12-01 22:59:48] 2025-12-02 06:58:48,974 | INFO     | sum of deviations: 2058525640536.0012
[2025-12-01 22:59:48] 2025-12-02 06:58:48,974 | INFO     | mean x: 1764631437.0
[2025-12-01 22:59:48] 2025-12-02 06:58:48,974 | INFO     | mean y: 3747588.931428571
[2025-12-01 22:59:48] 2025-12-02 06:58:48,974 | INFO     | intersect: -17482969225.16229
[2025-12-01 22:59:48] 2025-12-02 06:58:48,974 | INFO     | chi2: 2.610156404703053
[2025-12-01 22:59:48] 2025-12-02 06:58:48,974 | INFO     | current chi2=2.610156404703053 (change=2.0014211774190516 %)
[2025-12-01 22:59:48] 2025-12-02 06:58:48,974 | INFO     | right removable region: 874
[2025-12-01 22:59:48] 2025-12-02 06:58:48,975 | INFO     | sum of square deviations: 211312836460.0
[2025-12-01 22:59:48] 2025-12-02 06:58:48,983 | INFO     | sum of deviations: 1408825648199.5002
[2025-12-01 22:59:48] 2025-12-02 06:58:48,983 | INFO     | mean x: 1764631894.5
[2025-12-01 22:59:48] 2025-12-02 06:58:48,984 | INFO     | mean y: 3748274.6375
[2025-12-01 22:59:48] 2025-12-02 06:58:48,984 | INFO     | intersect: -11761077347.174963
[2025-12-01 22:59:48] 2025-12-02 06:58:48,984 | INFO     | chi2: 2.6536183969045157
[2025-12-01 22:59:48] 2025-12-02 06:58:48,984 | INFO     | current chi2=2.6536183969045157 (change=48.208142349881655 %)
[2025-12-01 22:59:48] 2025-12-02 06:58:48,985 | INFO     | sum of square deviations: 207731336750.0
[2025-12-01 22:59:48] 2025-12-02 06:58:48,993 | INFO     | sum of deviations: 1353104441402.9995
[2025-12-01 22:59:48] 2025-12-02 06:58:48,993 | INFO     | mean x: 1764632047.0
[2025-12-01 22:59:48] 2025-12-02 06:58:48,993 | INFO     | mean y: 3750645.2422857145
[2025-12-01 22:59:48] 2025-12-02 06:58:48,993 | INFO     | intersect: -11490574176.396677
[2025-12-01 22:59:48] 2025-12-02 06:58:48,993 | INFO     | chi2: 2.630348887364144
[2025-12-01 22:59:48] 2025-12-02 06:58:48,994 | INFO     | current chi2=2.630348887364144 (change=0.8768973552307248 %)
[2025-12-01 22:59:48] 2025-12-02 06:58:48,994 | INFO     | left removable region: 20
[2025-12-01 22:59:48] 2025-12-02 06:58:48,994 | INFO     | sum of square deviations: 193130756017.5
[2025-12-01 22:59:48] 2025-12-02 06:58:49,004 | INFO     | sum of deviations: 1569936648569.9998
[2025-12-01 22:59:48] 2025-12-02 06:58:49,004 | INFO     | mean x: 1764632016.5
[2025-12-01 22:59:48] 2025-12-02 06:58:49,004 | INFO     | mean y: 3768299.4847775176
[2025-12-01 22:59:48] 2025-12-02 06:58:49,004 | INFO     | intersect: -14340712771.631113
[2025-12-01 22:59:48] 2025-12-02 06:58:49,005 | INFO     | chi2: 0.07737033048984766
[2025-12-01 22:59:48] 2025-12-02 06:58:49,005 | INFO     | current memory leak: 8.13 B/s (using 854 data points, chi2=0.08)
[2025-12-01 22:59:48] 2025-12-02 06:58:49,005 | INFO     | could have reported an average CPU frequency of 4000 MHz (33 samples)
[2025-12-01 22:59:48] 2025-12-02 06:58:49,006 | INFO     | ..............................
[2025-12-01 22:59:48] 2025-12-02 06:58:49,006 | INFO     | . Timing measurements:
[2025-12-01 22:59:48] 2025-12-02 06:58:49,006 | INFO     | . get job = 0 s
[2025-12-01 22:59:48] 2025-12-02 06:58:49,006 | INFO     | . initial setup = 3 s
[2025-12-01 22:59:48] 2025-12-02 06:58:49,006 | INFO     | . payload setup = 9 s
[2025-12-01 22:59:48] 2025-12-02 06:58:49,006 | INFO     | . stage-in = 0 s
[2025-12-01 22:59:48] 2025-12-02 06:58:49,006 | INFO     | . payload execution = 53935 s
[2025-12-01 22:59:48] 2025-12-02 06:58:49,006 | INFO     | . stage-out = 3 s
[2025-12-01 22:59:48] 2025-12-02 06:58:49,006 | INFO     | . log creation = 0 s
[2025-12-01 22:59:48] 2025-12-02 06:58:49,006 | INFO     | ..............................
[2025-12-01 22:59:48] 2025-12-02 06:58:49,066 | INFO     | 
[2025-12-01 22:59:48] 2025-12-02 06:58:49,066 | INFO     | job summary report
[2025-12-01 22:59:48] 2025-12-02 06:58:49,066 | INFO     | --------------------------------------------------
[2025-12-01 22:59:48] 2025-12-02 06:58:49,066 | INFO     | PanDA job id: 6895232645
[2025-12-01 22:59:48] 2025-12-02 06:58:49,066 | INFO     | task id: 47538113
[2025-12-01 22:59:48] 2025-12-02 06:58:49,066 | INFO     | errors: (none)
[2025-12-01 22:59:48] 2025-12-02 06:58:49,066 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 22:59:48] 2025-12-02 06:58:49,066 | INFO     | pilot state: finished 
[2025-12-01 22:59:48] 2025-12-02 06:58:49,066 | INFO     | transexitcode: 0
[2025-12-01 22:59:48] 2025-12-02 06:58:49,066 | INFO     | exeerrorcode: 0
[2025-12-01 22:59:48] 2025-12-02 06:58:49,066 | INFO     | exeerrordiag: 
[2025-12-01 22:59:48] 2025-12-02 06:58:49,066 | INFO     | exitcode: 0
[2025-12-01 22:59:48] 2025-12-02 06:58:49,066 | INFO     | exitmsg: OK
[2025-12-01 22:59:48] 2025-12-02 06:58:49,066 | INFO     | cpuconsumptiontime: 116436 s
[2025-12-01 22:59:48] 2025-12-02 06:58:49,066 | INFO     | nevents: 1000
[2025-12-01 22:59:48] 2025-12-02 06:58:49,066 | INFO     | neventsw: 0
[2025-12-01 22:59:48] 2025-12-02 06:58:49,066 | INFO     | pid: 105502
[2025-12-01 22:59:48] 2025-12-02 06:58:49,067 | INFO     | pgrp: 105502
[2025-12-01 22:59:48] 2025-12-02 06:58:49,067 | INFO     | corecount: 10
[2025-12-01 22:59:48] 2025-12-02 06:58:49,067 | INFO     | event service: False
[2025-12-01 22:59:48] 2025-12-02 06:58:49,067 | INFO     | sizes: {0: 2284469, 4: 2284731, 11: 2284759, 53949: 2353445, 53952: 2362467, 53954: 2362523, 53963: 2362961}
[2025-12-01 22:59:48] 2025-12-02 06:58:49,067 | INFO     | --------------------------------------------------
[2025-12-01 22:59:48] 2025-12-02 06:58:49,067 | INFO     | 
[2025-12-01 22:59:48] 2025-12-02 06:58:49,067 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc520/slots/2
[2025-12-01 22:59:48] 2025-12-02 06:58:49,107 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 22:59:48] 2025-12-02 06:58:49,107 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 22:59:48] 2025-12-02 06:58:49,107 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 22:59:48] 2025-12-02 06:58:49,107 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 22:59:48] 2025-12-02 06:58:49,107 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 22:59:48] 2025-12-02 06:58:49,107 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 22:59:48] 2025-12-02 06:58:49,107 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 22:59:48] 2025-12-02 06:58:49,107 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 22:59:48] 2025-12-02 06:58:49,107 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 22:59:48] 2025-12-02 06:58:49,107 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 22:59:48] 2025-12-02 06:58:49,107 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 22:59:48] 2025-12-02 06:58:49,107 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 22:59:48] 2025-12-02 06:58:49,107 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 22:59:48] 2025-12-02 06:58:49,107 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 22:59:48] 2025-12-02 06:58:49,107 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 22:59:48] 2025-12-02 06:58:49,107 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 22:59:48] 2025-12-02 06:58:49,108 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 22:59:48] 2025-12-02 06:58:49,108 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 22:59:48] 2025-12-02 06:58:49,108 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 22:59:48] 2025-12-02 06:58:49,108 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 22:59:48] 2025-12-02 06:58:49,108 | INFO     | job 6895232645 has completed (purged errors)
[2025-12-01 22:59:48] 2025-12-02 06:58:49,108 | INFO     | overall cleanup function is called
[2025-12-01 22:59:48] 2025-12-02 06:58:50,124 | INFO     | --- collectZombieJob: --- 10, [105502]
[2025-12-01 22:59:48] 2025-12-02 06:58:50,124 | INFO     | zombie collector waiting for pid 105502
[2025-12-01 22:59:48] 2025-12-02 06:58:50,124 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 22:59:48] 2025-12-02 06:58:50,124 | INFO     | collected zombie processes
[2025-12-01 22:59:48] 2025-12-02 06:58:50,124 | INFO     | will attempt to kill all subprocesses of pid=105502
[2025-12-01 22:59:48] 2025-12-02 06:58:50,388 | INFO     | process IDs to be killed: [105502] (in reverse order)
[2025-12-01 22:59:48] 2025-12-02 06:58:50,507 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 22:59:48] 2025-12-02 06:58:50,508 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 22:59:48] 2025-12-02 06:58:50,517 | INFO     | did not find any defunct processes belonging to 105502
[2025-12-01 22:59:48] 2025-12-02 06:58:50,521 | INFO     | did not find any defunct processes belonging to 105502
[2025-12-01 22:59:48] 2025-12-02 06:58:50,525 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 22:59:48] 2025-12-02 06:58:50,525 | INFO     | ready for new job
[2025-12-01 22:59:48] 2025-12-02 06:58:50,525 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 22:59:48] 2025-12-02 06:58:50,527 | INFO     | ***************************************
[2025-12-01 22:59:48] 2025-12-02 06:58:50,527 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 22:59:48] 2025-12-02 06:58:50,527 | INFO     | ***************************************
[2025-12-01 22:59:48] 2025-12-02 06:58:50,527 | INFO     | 
[2025-12-01 22:59:48] 2025-12-02 06:58:50,529 | INFO     | architecture information:
[2025-12-01 22:59:48] 2025-12-02 06:58:50,530 | INFO     | executing command: cat /etc/os-release
[2025-12-01 22:59:48] 2025-12-02 06:58:50,545 | INFO     | cat /etc/os-release:
[2025-12-01 22:59:48] NAME="CentOS Linux"
[2025-12-01 22:59:48] VERSION="7 (Core)"
[2025-12-01 22:59:48] ID="centos"
[2025-12-01 22:59:48] ID_LIKE="rhel fedora"
[2025-12-01 22:59:48] VERSION_ID="7"
[2025-12-01 22:59:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 22:59:48] ANSI_COLOR="0;31"
[2025-12-01 22:59:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 22:59:48] HOME_URL="https://www.centos.org/"
[2025-12-01 22:59:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 22:59:48] 
[2025-12-01 22:59:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 22:59:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 22:59:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 22:59:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 22:59:48] 
[2025-12-01 22:59:48] 2025-12-02 06:58:50,546 | INFO     | ***************************************
[2025-12-01 22:59:48] 2025-12-02 06:58:51,048 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc520/slots/2
[2025-12-01 22:59:48] 2025-12-02 06:58:51,066 | INFO     | sufficient remaining disk space (170382065664 B)
[2025-12-01 22:59:48] 2025-12-02 06:58:51,066 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 22:59:48] 2025-12-02 06:58:51,067 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 22:59:48] 2025-12-02 06:58:51,067 | INFO     | update_server=False
[2025-12-01 22:59:48] 2025-12-02 06:58:51,067 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 22:59:48] 2025-12-02 06:58:51,067 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 22:59:48] 2025-12-02 06:58:51,067 | INFO     | aborting loop
[2025-12-01 22:59:48] 2025-12-02 06:58:51,070 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 22:59:48] 2025-12-02 06:58:51,299 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 22:59:48] 2025-12-02 06:58:51,469 | INFO     | all job control threads have been joined
[2025-12-01 22:59:48] 2025-12-02 06:58:51,593 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 22:59:48] 2025-12-02 06:58:51,778 | INFO     | all data control threads have been joined
[2025-12-01 22:59:48] 2025-12-02 06:58:52,072 | INFO     | [job] retrieve thread has finished
[2025-12-01 22:59:48] 2025-12-02 06:58:52,072 | INFO     | [job] job monitor thread has finished
[2025-12-01 22:59:48] 2025-12-02 06:58:52,075 | INFO     | [job] queue monitor thread has finished
[2025-12-01 22:59:48] 2025-12-02 06:58:52,221 | INFO     | [data] copytool_in thread has finished
[2025-12-01 22:59:48] 2025-12-02 06:58:52,253 | INFO     | all payload control threads have been joined
[2025-12-01 22:59:48] 2025-12-02 06:58:52,474 | INFO     | [job] control thread has finished
[2025-12-01 22:59:48] 2025-12-02 06:58:52,526 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 22:59:48] 2025-12-02 06:58:52,616 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 22:59:48] 2025-12-02 06:58:52,783 | INFO     | [data] control thread has finished
[2025-12-01 22:59:48] 2025-12-02 06:58:52,905 | INFO     | [payload] failed_post thread has finished
[2025-12-01 22:59:48] 2025-12-02 06:58:53,076 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 22:59:48] 2025-12-02 06:58:53,258 | INFO     | [payload] control thread has finished
[2025-12-01 22:59:48] 2025-12-02 06:58:53,350 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 22:59:48] 2025-12-02 06:58:53,439 | INFO     | [job] validate thread has finished
[2025-12-01 22:59:48] 2025-12-02 06:58:53,598 | INFO     | [data] copytool_out thread has finished
[2025-12-01 22:59:48] 2025-12-02 06:58:53,661 | INFO     | [payload] validate_post thread has finished
[2025-12-01 22:59:48] 2025-12-02 06:58:55,304 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 22:59:48] 2025-12-02 06:59:08,541 [wrapper] supervise_pilot (15 min periods counter: 61)
[2025-12-01 22:59:48] 2025-12-02 06:59:21,395 | INFO     | PID=86388 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 22:59:48] 2025-12-02 06:59:21,395 | INFO     | .. there are 12 such processes running
[2025-12-01 22:59:48] 2025-12-02 06:59:21,396 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 22:59:48] 2025-12-02 06:59:21,396 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 22:59:48] 2025-12-02 06:59:21,396 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 22:59:48] 2025-12-02 06:59:41,455 | INFO     | [monitor] cgroup control has ended
[2025-12-01 22:59:48] 2025-12-02 06:59:42,986 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135388786751296)>', '<ExcThread(monitor, started 135388140123904)>']
[2025-12-01 22:59:48] 2025-12-02 06:59:43,523 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 22:59:48] 2025-12-02 06:59:43,523 | INFO     | [monitor] control thread has ended
[2025-12-01 22:59:48] 2025-12-02 06:59:48,011 | INFO     | all workflow threads have been joined
[2025-12-01 22:59:48] 2025-12-02 06:59:48,011 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 22:59:48] 2025-12-02 06:59:48,011 | INFO     | traces error code: 0
[2025-12-01 22:59:48] 2025-12-02 06:59:48,011 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 22:59:48] 2025-12-02 06:59:48,101 [wrapper] ==== pilot stdout END ====
[2025-12-01 22:59:48] 2025-12-02 06:59:48,103 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 22:59:48] 2025-12-02 06:59:48,110 [wrapper] pilotpid: 86388
[2025-12-01 22:59:48] 2025-12-02 06:59:48,112 [wrapper] Pilot exit status: 0
[2025-12-01 22:59:48] 2025-12-02 06:59:48,122 [wrapper] pandaids: 6895232645
[2025-12-01 22:59:48] 2025-12-02 06:59:48,190 [wrapper] cleanup supervisor_pilot 1318962 86389
[2025-12-01 22:59:48] 2025-12-02 06:59:48,194 [wrapper] Test setup, not cleaning
[2025-12-01 22:59:48] 2025-12-02 06:59:48,203 [wrapper] apfmon messages muted
[2025-12-01 22:59:48] 2025-12-02 06:59:48,205 [wrapper] ==== wrapper stdout END ====
[2025-12-01 22:59:48] 2025-12-02 06:59:48,210 [wrapper] ==== wrapper stderr END ====
[2025-12-01 22:59:48]  *** Error codes and diagnostics ***
[2025-12-01 22:59:48]     "exeErrorCode": 0,
[2025-12-01 22:59:48]     "exeErrorDiag": "",
[2025-12-01 22:59:48]     "pilotErrorCode": 0,
[2025-12-01 22:59:48]     "pilotErrorDiag": "",
[2025-12-01 22:59:48]  *** Listing of results directory ***
[2025-12-01 22:59:48] total 1075044
[2025-12-01 22:59:48] -rw-r--r-- 1 root root    576529 Nov 28 02:28 pilot3.tar.gz
[2025-12-01 22:59:48] -rwx------ 1 4871 1028     36292 Nov 28 02:31 runpilot2-wrapper.sh
[2025-12-01 22:59:48] -rw-r--r-- 1 root root      5112 Nov 28 02:33 queuedata.json
[2025-12-01 22:59:48] -rw-r--r-- 1 root root       100 Dec  1 07:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 22:59:48] -rwxr-xr-x 1 root root      7986 Dec  1 07:58 run_atlas
[2025-12-01 22:59:48] -rw-r--r-- 1 root root       105 Dec  1 07:58 job.xml
[2025-12-01 22:59:48] -rw-r--r-- 1 root root      7071 Dec  1 07:58 init_data.xml
[2025-12-01 22:59:48] -rw-r--r-- 2 root root 377708247 Dec  1 07:58 EVNT.47528871._000138.pool.root.1
[2025-12-01 22:59:48] -rw-r--r-- 2 root root     15847 Dec  1 07:58 start_atlas.sh
[2025-12-01 22:59:48] drwxrwx--x 2 root root      4096 Dec  1 07:58 shared
[2025-12-01 22:59:48] -rw-r--r-- 2 root root    590120 Dec  1 07:58 input.tar.gz
[2025-12-01 22:59:48] -rw-r--r-- 1 root root         0 Dec  1 07:58 boinc_lockfile
[2025-12-01 22:59:48] -rw-r--r-- 1 root root      2882 Dec  1 07:58 pandaJob.out
[2025-12-01 22:59:48] -rw------- 1 root root    992142 Dec  1 07:59 agis_schedconf.cvmfs.json
[2025-12-01 22:59:48] drwxr-xr-x 5  320  320      4096 Dec  1 07:59 pilot3
[2025-12-01 22:59:48] -rw-r--r-- 1 root root       532 Dec  1 22:51 boinc_task_state.xml
[2025-12-01 22:59:48] -rw------- 1 root root 699153201 Dec  1 22:58 HITS.47538113._001375.pool.root.1
[2025-12-01 22:59:48] -rw------- 1 root root      1052 Dec  1 22:58 memory_monitor_summary.json
[2025-12-01 22:59:48] -rw------- 1 root root   1516240 Dec  1 22:58 agis_ddmendpoints.agis.ALL.json
[2025-12-01 22:59:48] -rw------- 1 root root   2367526 Dec  1 22:58 log.47538113._001375.job.log.tgz.1
[2025-12-01 22:59:48] -rw------- 1 root root        95 Dec  1 22:58 pilot_heartbeat.json
[2025-12-01 22:59:48] -rw------- 1 root root     27991 Dec  1 22:58 heartbeat.json
[2025-12-01 22:59:48] -rw------- 1 root root      4837 Dec  1 22:59 pilotlog.txt
[2025-12-01 22:59:48] -rw-r--r-- 1 root root        29 Dec  1 22:59 wrapper_checkpoint.txt
[2025-12-01 22:59:48] -rw-r--r-- 1 root root      8192 Dec  1 22:59 boinc_mmap_file
[2025-12-01 22:59:48] -rw------- 1 root root   7643970 Dec  1 22:59 log.47538113._001375.job.log.1
[2025-12-01 22:59:48] -rw------- 1 root root       353 Dec  1 22:59 output.list
[2025-12-01 22:59:48] -rw-r--r-- 1 root root       620 Dec  1 22:59 runtime_log
[2025-12-01 22:59:48] -rw------- 1 root root  10055680 Dec  1 22:59 result.tar.gz
[2025-12-01 22:59:48] -rw------- 1 root root       664 Dec  1 22:59 Tw7KDmMwAj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgNLKDmGeDlBn.diag
[2025-12-01 22:59:48] -rw-r--r-- 1 root root      9021 Dec  1 22:59 runtime_log.err
[2025-12-01 22:59:48] -rw-r--r-- 1 root root     21369 Dec  1 22:59 stderr.txt
[2025-12-01 22:59:48] HITS file was successfully produced:
[2025-12-01 22:59:48] -rw------- 1 root root 699153201 Dec  1 22:58 shared/HITS.pool.root.1
[2025-12-01 22:59:48]  *** Contents of shared directory: ***
[2025-12-01 22:59:48] total 1062048
[2025-12-01 22:59:48] -rw-r--r-- 2 root root 377708247 Dec  1 07:58 ATLAS.root_0
[2025-12-01 22:59:48] -rw-r--r-- 2 root root     15847 Dec  1 07:58 start_atlas.sh
[2025-12-01 22:59:48] -rw-r--r-- 2 root root    590120 Dec  1 07:58 input.tar.gz
[2025-12-01 22:59:48] -rw------- 1 root root 699153201 Dec  1 22:58 HITS.pool.root.1
[2025-12-01 22:59:48] -rw------- 1 root root  10055680 Dec  1 22:59 result.tar.gz
22:59:50 (79436): run_atlas exited; CPU time 116843.713011
22:59:50 (79436): called boinc_finish(0)

</stderr_txt>
]]>

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