Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
20:34:58 (13539): wrapper (7.7.26015): starting
20:34:58 (13539): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 20:34:58] Arguments: --nthreads 8
[2025-12-01 20:34:58] Threads: 8
[2025-12-01 20:34:58] Checking for CVMFS
[2025-12-01 20:34:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 20:34:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 20:34:58] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 20:34:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 20:34:58] 2.11.0.0 4571 73180 112488 153530 1 1 2338842 4096000 0 130560 1 7737239 99.462 7900597 707 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-01 20:34:58] CVMFS is ok
[2025-12-01 20:34:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 20:34:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 20:34:58] Further information can be found at the LHC@home message board.
[2025-12-01 20:34:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 20:34:58] Checking for apptainer binary...
[2025-12-01 20:34:58] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-01 20:34:58] apptainer is not installed, using version from CVMFS
[2025-12-01 20:34:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 20:34:59] WARNING: Environment variable TMPDIR already has value [/tmp/job_10941505/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node009
[2025-12-01 20:34:59] apptainer works
[2025-12-01 20:34:59] Set ATHENA_PROC_NUMBER=8
[2025-12-01 20:34:59] Set ATHENA_CORE_NUMBER=8
[2025-12-01 20:34:59] Starting ATLAS job with PandaID=6895232061
[2025-12-01 20:34:59] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10941505/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 00:09:31]  *** The last 200 lines of the pilot log: ***
[2025-12-02 00:09:31] 2025-12-01 23:08:28,410 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 00:09:31] 2025-12-01 23:08:28,414 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2719.58284375
[2025-12-02 00:09:31] 2025-12-01 23:08:28,419 | INFO     | using path: /tmp/job_10941505/atlas/pilot/slots/0/PanDA_Pilot-6895232061/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 00:09:31] 2025-12-01 23:08:28,420 | INFO     | extracted standard info from prmon json
[2025-12-02 00:09:31] 2025-12-01 23:08:28,420 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 00:09:31] 2025-12-01 23:08:28,420 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 00:09:31] 2025-12-01 23:08:28,422 | INFO     | fitting pss+swap vs Time
[2025-12-02 00:09:31] 2025-12-01 23:08:28,422 | INFO     | sum of square deviations: 2871616632.5
[2025-12-02 00:09:31] 2025-12-01 23:08:28,423 | INFO     | sum of deviations: 1306722013350.0
[2025-12-02 00:09:31] 2025-12-01 23:08:28,423 | INFO     | mean x: 1764624098.5
[2025-12-02 00:09:31] 2025-12-01 23:08:28,423 | INFO     | mean y: 5425162.219047619
[2025-12-02 00:09:31] 2025-12-01 23:08:28,423 | INFO     | intersect: -802982386198.373
[2025-12-02 00:09:31] 2025-12-01 23:08:28,423 | INFO     | chi2: 3.969371767408755
[2025-12-02 00:09:31] 2025-12-01 23:08:28,423 | INFO     | sum of square deviations: 2671343110.0
[2025-12-02 00:09:31] 2025-12-01 23:08:28,424 | INFO     | sum of deviations: 1344581352127.9998
[2025-12-02 00:09:31] 2025-12-01 23:08:28,424 | INFO     | mean x: 1764623946.0
[2025-12-02 00:09:31] 2025-12-01 23:08:28,424 | INFO     | mean y: 5453046.604878048
[2025-12-02 00:09:31] 2025-12-01 23:08:28,424 | INFO     | intersect: -888192114097.8593
[2025-12-02 00:09:31] 2025-12-01 23:08:28,424 | INFO     | chi2: 2.408371224424967
[2025-12-02 00:09:31] 2025-12-01 23:08:28,424 | INFO     | current chi2=2.408371224424967 (change=39.326136085328805 %)
[2025-12-02 00:09:31] 2025-12-01 23:08:28,424 | INFO     | sum of square deviations: 2480604650.0
[2025-12-02 00:09:31] 2025-12-01 23:08:28,425 | INFO     | sum of deviations: 1249383106165.0
[2025-12-02 00:09:31] 2025-12-01 23:08:28,425 | INFO     | mean x: 1764623793.5
[2025-12-02 00:09:31] 2025-12-01 23:08:28,425 | INFO     | mean y: 5376918.27
[2025-12-02 00:09:31] 2025-12-01 23:08:28,425 | INFO     | intersect: -888766300719.1542
[2025-12-02 00:09:31] 2025-12-01 23:08:28,425 | INFO     | chi2: 2.4120573117869655
[2025-12-02 00:09:31] 2025-12-01 23:08:28,425 | INFO     | current chi2=2.4120573117869655 (change=-0.15305312256746084 %)
[2025-12-02 00:09:31] 2025-12-01 23:08:28,425 | INFO     | right removable region: 199
[2025-12-02 00:09:31] 2025-12-01 23:08:28,425 | INFO     | sum of square deviations: 2671343110.0
[2025-12-02 00:09:31] 2025-12-01 23:08:28,426 | INFO     | sum of deviations: 1192299697358.0002
[2025-12-02 00:09:31] 2025-12-01 23:08:28,426 | INFO     | mean x: 1764624251.0
[2025-12-02 00:09:31] 2025-12-01 23:08:28,426 | INFO     | mean y: 5511932.478048781
[2025-12-02 00:09:31] 2025-12-01 23:08:28,426 | INFO     | intersect: -787598653381.16
[2025-12-02 00:09:31] 2025-12-01 23:08:28,426 | INFO     | chi2: 2.5306350811072313
[2025-12-02 00:09:31] 2025-12-01 23:08:28,426 | INFO     | current chi2=2.5306350811072313 (change=36.24595453906665 %)
[2025-12-02 00:09:31] 2025-12-01 23:08:28,427 | INFO     | sum of square deviations: 2480604650.0
[2025-12-02 00:09:31] 2025-12-01 23:08:28,427 | INFO     | sum of deviations: 1119976500866.0
[2025-12-02 00:09:31] 2025-12-01 23:08:28,427 | INFO     | mean x: 1764624403.5
[2025-12-02 00:09:31] 2025-12-01 23:08:28,427 | INFO     | mean y: 5569758.06
[2025-12-02 00:09:31] 2025-12-01 23:08:28,427 | INFO     | intersect: -796710611828.8293
[2025-12-02 00:09:31] 2025-12-01 23:08:28,427 | INFO     | chi2: 2.415130669772691
[2025-12-02 00:09:31] 2025-12-01 23:08:28,428 | INFO     | current chi2=2.415130669772691 (change=4.564246034398744 %)
[2025-12-02 00:09:31] 2025-12-01 23:08:28,428 | INFO     | left removable region: 20
[2025-12-02 00:09:31] 2025-12-01 23:08:28,428 | INFO     | sum of square deviations: 1778377530.0
[2025-12-02 00:09:31] 2025-12-01 23:08:28,428 | INFO     | sum of deviations: 929343354193.9999
[2025-12-02 00:09:31] 2025-12-01 23:08:28,428 | INFO     | mean x: 1764624373.0
[2025-12-02 00:09:31] 2025-12-01 23:08:28,428 | INFO     | mean y: 5634992.340782123
[2025-12-02 00:09:31] 2025-12-01 23:08:28,428 | INFO     | intersect: -922150603506.8624
[2025-12-02 00:09:31] 2025-12-01 23:08:28,428 | INFO     | chi2: 0.3196856117046492
[2025-12-02 00:09:31] 2025-12-01 23:08:28,429 | INFO     | current memory leak: 522.58 B/s (using 179 data points, chi2=0.32)
[2025-12-02 00:09:31] 2025-12-01 23:08:28,429 | INFO     | could have reported an average CPU frequency of 2691 MHz (10 samples)
[2025-12-02 00:09:31] 2025-12-01 23:08:28,429 | INFO     | ..............................
[2025-12-02 00:09:31] 2025-12-01 23:08:28,429 | INFO     | . Timing measurements:
[2025-12-02 00:09:31] 2025-12-01 23:08:28,429 | INFO     | . get job = 0 s
[2025-12-02 00:09:31] 2025-12-01 23:08:28,429 | INFO     | . initial setup = 1 s
[2025-12-02 00:09:31] 2025-12-01 23:08:28,429 | INFO     | . payload setup = 4 s
[2025-12-02 00:09:31] 2025-12-01 23:08:28,429 | INFO     | . stage-in = 0 s
[2025-12-02 00:09:31] 2025-12-01 23:08:28,429 | INFO     | . payload execution = 12780 s
[2025-12-02 00:09:31] 2025-12-01 23:08:28,429 | INFO     | . stage-out = 1 s
[2025-12-02 00:09:31] 2025-12-01 23:08:28,429 | INFO     | . log creation = 0 s
[2025-12-02 00:09:31] 2025-12-01 23:08:28,429 | INFO     | ..............................
[2025-12-02 00:09:31] 2025-12-01 23:08:28,875 | INFO     | 
[2025-12-02 00:09:31] 2025-12-01 23:08:28,875 | INFO     | job summary report
[2025-12-02 00:09:31] 2025-12-01 23:08:28,875 | INFO     | --------------------------------------------------
[2025-12-02 00:09:31] 2025-12-01 23:08:28,875 | INFO     | PanDA job id: 6895232061
[2025-12-02 00:09:31] 2025-12-01 23:08:28,875 | INFO     | task id: 47538113
[2025-12-02 00:09:31] 2025-12-01 23:08:28,875 | INFO     | errors: (none)
[2025-12-02 00:09:31] 2025-12-01 23:08:28,875 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 00:09:31] 2025-12-01 23:08:28,875 | INFO     | pilot state: finished 
[2025-12-02 00:09:31] 2025-12-01 23:08:28,875 | INFO     | transexitcode: 0
[2025-12-02 00:09:31] 2025-12-01 23:08:28,875 | INFO     | exeerrorcode: 0
[2025-12-02 00:09:31] 2025-12-01 23:08:28,875 | INFO     | exeerrordiag: 
[2025-12-02 00:09:31] 2025-12-01 23:08:28,875 | INFO     | exitcode: 0
[2025-12-02 00:09:31] 2025-12-01 23:08:28,875 | INFO     | exitmsg: OK
[2025-12-02 00:09:31] 2025-12-01 23:08:28,875 | INFO     | cpuconsumptiontime: 97366 s
[2025-12-02 00:09:31] 2025-12-01 23:08:28,875 | INFO     | nevents: 1000
[2025-12-02 00:09:31] 2025-12-01 23:08:28,875 | INFO     | neventsw: 0
[2025-12-02 00:09:31] 2025-12-01 23:08:28,875 | INFO     | pid: 24622
[2025-12-02 00:09:31] 2025-12-01 23:08:28,875 | INFO     | pgrp: 24622
[2025-12-02 00:09:31] 2025-12-01 23:08:28,875 | INFO     | corecount: 8
[2025-12-02 00:09:31] 2025-12-01 23:08:28,875 | INFO     | event service: False
[2025-12-02 00:09:31] 2025-12-01 23:08:28,875 | INFO     | sizes: {0: 2284581, 2: 2284843, 11: 2284871, 12789: 2334805, 12790: 2343885, 12792: 2344075}
[2025-12-02 00:09:31] 2025-12-01 23:08:28,875 | INFO     | --------------------------------------------------
[2025-12-02 00:09:31] 2025-12-01 23:08:28,875 | INFO     | 
[2025-12-02 00:09:31] 2025-12-01 23:08:28,876 | INFO     | executing command: ls -lF /tmp/job_10941505/atlas/pilot/slots/0
[2025-12-02 00:09:31] 2025-12-01 23:08:28,885 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 00:09:31] 2025-12-01 23:08:28,885 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 00:09:31] 2025-12-01 23:08:28,885 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 00:09:31] 2025-12-01 23:08:28,885 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 00:09:31] 2025-12-01 23:08:28,885 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 00:09:31] 2025-12-01 23:08:28,885 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 00:09:31] 2025-12-01 23:08:28,885 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 00:09:31] 2025-12-01 23:08:28,885 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 00:09:31] 2025-12-01 23:08:28,885 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 00:09:31] 2025-12-01 23:08:28,885 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 00:09:31] 2025-12-01 23:08:28,885 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 00:09:31] 2025-12-01 23:08:28,885 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 00:09:31] 2025-12-01 23:08:28,885 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 00:09:31] 2025-12-01 23:08:28,886 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 00:09:31] 2025-12-01 23:08:28,886 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 00:09:31] 2025-12-01 23:08:28,886 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 00:09:31] 2025-12-01 23:08:28,886 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 00:09:31] 2025-12-01 23:08:28,886 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 00:09:31] 2025-12-01 23:08:28,886 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 00:09:31] 2025-12-01 23:08:28,886 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 00:09:31] 2025-12-01 23:08:28,886 | INFO     | job 6895232061 has completed (purged errors)
[2025-12-02 00:09:31] 2025-12-01 23:08:28,886 | INFO     | overall cleanup function is called
[2025-12-02 00:09:31] 2025-12-01 23:08:29,893 | INFO     | --- collectZombieJob: --- 10, [24622]
[2025-12-02 00:09:31] 2025-12-01 23:08:29,893 | INFO     | zombie collector waiting for pid 24622
[2025-12-02 00:09:31] 2025-12-01 23:08:29,893 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 00:09:31] 2025-12-01 23:08:29,894 | INFO     | collected zombie processes
[2025-12-02 00:09:31] 2025-12-01 23:08:29,894 | INFO     | will attempt to kill all subprocesses of pid=24622
[2025-12-02 00:09:31] 2025-12-01 23:08:29,999 | INFO     | process IDs to be killed: [24622] (in reverse order)
[2025-12-02 00:09:31] 2025-12-01 23:08:30,036 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 00:09:31] 2025-12-01 23:08:30,037 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 00:09:31] 2025-12-01 23:08:30,041 | INFO     | did not find any defunct processes belonging to 24622
[2025-12-02 00:09:31] 2025-12-01 23:08:30,044 | INFO     | did not find any defunct processes belonging to 24622
[2025-12-02 00:09:31] 2025-12-01 23:08:30,044 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 00:09:31] 2025-12-01 23:08:30,044 | INFO     | ready for new job
[2025-12-02 00:09:31] 2025-12-01 23:08:30,044 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 00:09:31] 2025-12-01 23:08:30,045 | INFO     | ***************************************
[2025-12-02 00:09:31] 2025-12-01 23:08:30,045 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 00:09:31] 2025-12-01 23:08:30,045 | INFO     | ***************************************
[2025-12-02 00:09:31] 2025-12-01 23:08:30,045 | INFO     | 
[2025-12-02 00:09:31] 2025-12-01 23:08:30,059 | INFO     | architecture information:
[2025-12-02 00:09:31] 2025-12-01 23:08:30,059 | INFO     | executing command: cat /etc/os-release
[2025-12-02 00:09:31] 2025-12-01 23:08:30,065 | INFO     | cat /etc/os-release:
[2025-12-02 00:09:31] NAME="CentOS Linux"
[2025-12-02 00:09:31] VERSION="7 (Core)"
[2025-12-02 00:09:31] ID="centos"
[2025-12-02 00:09:31] ID_LIKE="rhel fedora"
[2025-12-02 00:09:31] VERSION_ID="7"
[2025-12-02 00:09:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 00:09:31] ANSI_COLOR="0;31"
[2025-12-02 00:09:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 00:09:31] HOME_URL="https://www.centos.org/"
[2025-12-02 00:09:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 00:09:31] 
[2025-12-02 00:09:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 00:09:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 00:09:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 00:09:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 00:09:31] 
[2025-12-02 00:09:31] 2025-12-01 23:08:30,065 | INFO     | ***************************************
[2025-12-02 00:09:31] 2025-12-01 23:08:30,568 | INFO     | executing command: df -mP /tmp/job_10941505/atlas/pilot/slots/0
[2025-12-02 00:09:31] 2025-12-01 23:08:30,573 | INFO     | sufficient remaining disk space (223465177088 B)
[2025-12-02 00:09:31] 2025-12-01 23:08:30,573 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 00:09:31] 2025-12-01 23:08:30,574 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 00:09:31] 2025-12-01 23:08:30,574 | INFO     | update_server=False
[2025-12-02 00:09:31] 2025-12-01 23:08:30,574 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 00:09:31] 2025-12-01 23:08:30,574 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 00:09:31] 2025-12-01 23:08:30,787 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-02 00:09:31] 2025-12-01 23:08:30,787 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-02 00:09:31] 2025-12-01 23:08:30,787 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 00:09:31] 2025-12-01 23:08:30,787 | INFO     | will abort loop
[2025-12-02 00:09:31] 2025-12-01 23:08:31,003 | INFO     | all data control threads have been joined
[2025-12-02 00:09:31] 2025-12-01 23:08:31,315 | INFO     | all payload control threads have been joined
[2025-12-02 00:09:31] 2025-12-01 23:08:31,579 | INFO     | [job] retrieve thread has finished
[2025-12-02 00:09:31] 2025-12-01 23:08:31,792 | INFO     | [job] job monitor thread has finished
[2025-12-02 00:09:31] 2025-12-01 23:08:31,822 | INFO     | [data] copytool_in thread has finished
[2025-12-02 00:09:31] 2025-12-01 23:08:32,008 | INFO     | [data] control thread has finished
[2025-12-02 00:09:31] 2025-12-01 23:08:32,031 | INFO     | [job] validate thread has finished
[2025-12-02 00:09:31] 2025-12-01 23:08:32,078 | INFO     | all job control threads have been joined
[2025-12-02 00:09:31] 2025-12-01 23:08:32,304 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 00:09:31] 2025-12-01 23:08:32,320 | INFO     | [payload] control thread has finished
[2025-12-02 00:09:31] 2025-12-01 23:08:32,551 | INFO     | [payload] failed_post thread has finished
[2025-12-02 00:09:31] 2025-12-01 23:08:32,563 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 00:09:31] 2025-12-01 23:08:32,579 | INFO     | [data] copytool_out thread has finished
[2025-12-02 00:09:31] 2025-12-01 23:08:32,641 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 00:09:31] 2025-12-01 23:08:32,905 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 00:09:31] 2025-12-01 23:08:32,927 | INFO     | [payload] validate_post thread has finished
[2025-12-02 00:09:31] 2025-12-01 23:08:33,084 | INFO     | [job] control thread has finished
[2025-12-02 00:09:31] 2025-12-01 23:08:33,488 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 00:09:31] 2025-12-01 23:08:34,493 | INFO     | [job] queue monitor thread has finished
[2025-12-02 00:09:31] 2025-12-01 23:08:36,910 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 00:09:31] 2025-12-01 23:08:41,330 | INFO     | job.realtimelogging is not enabled
[2025-12-02 00:09:31] 2025-12-01 23:08:42,335 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 00:09:31] 2025-12-01 23:09:00,304 | INFO     | PID=17326 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 00:09:31] 2025-12-01 23:09:00,304 | INFO     | .. there are 4 such processes running
[2025-12-02 00:09:31] 2025-12-01 23:09:00,304 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 00:09:31] 2025-12-01 23:09:00,304 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 00:09:31] 2025-12-01 23:09:00,304 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 00:09:31] 2025-12-01 23:09:25,021 | INFO     | [monitor] cgroup control has ended
[2025-12-02 00:09:31] 2025-12-01 23:09:26,026 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-12-02 00:09:31] 2025-12-01 23:09:26,433 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 00:09:31] 2025-12-01 23:09:26,433 | INFO     | [monitor] control thread has ended
[2025-12-02 00:09:31] 2025-12-01 23:09:31,051 | INFO     | all workflow threads have been joined
[2025-12-02 00:09:31] 2025-12-01 23:09:31,051 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 00:09:31] 2025-12-01 23:09:31,051 | INFO     | traces error code: 0
[2025-12-02 00:09:31] 2025-12-01 23:09:31,052 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 00:09:31] 2025-12-01 23:09:31,105 [wrapper] ==== pilot stdout END ====
[2025-12-02 00:09:31] 2025-12-01 23:09:31,106 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 00:09:31] 2025-12-01 23:09:31,107 [wrapper] pilotpid: 17326
[2025-12-02 00:09:31] 2025-12-01 23:09:31,108 [wrapper] Pilot exit status: 0
[2025-12-02 00:09:31] 2025-12-01 23:09:31,112 [wrapper] pandaids: 6895232061
[2025-12-02 00:09:31] 2025-12-01 23:09:31,137 [wrapper] cleanup supervisor_pilot 22167 17327
[2025-12-02 00:09:31] 2025-12-01 23:09:31,138 [wrapper] Test setup, not cleaning
[2025-12-02 00:09:31] 2025-12-01 23:09:31,139 [wrapper] apfmon messages muted
[2025-12-02 00:09:31] 2025-12-01 23:09:31,140 [wrapper] ==== wrapper stdout END ====
[2025-12-02 00:09:31] 2025-12-01 23:09:31,140 [wrapper] ==== wrapper stderr END ====
[2025-12-02 00:09:31]  *** Error codes and diagnostics ***
[2025-12-02 00:09:31]     "exeErrorCode": 0,
[2025-12-02 00:09:31]     "exeErrorDiag": "",
[2025-12-02 00:09:31]     "pilotErrorCode": 0,
[2025-12-02 00:09:31]     "pilotErrorDiag": "",
[2025-12-02 00:09:31]  *** Listing of results directory ***
[2025-12-02 00:09:31] total 1040672
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user    576529 Nov 28 11:28 pilot3.tar.gz
[2025-12-02 00:09:31] -rwx------ 1 mf493845 unix-user     36292 Nov 28 11:31 runpilot2-wrapper.sh
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user      5112 Nov 28 11:33 queuedata.json
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user       100 Dec  1 18:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 00:09:31] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  1 18:59 run_atlas
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user       105 Dec  1 18:59 job.xml
[2025-12-02 00:09:31] -rw-r--r-- 2 mf493845 unix-user 376324053 Dec  1 20:34 EVNT.47528871._000133.pool.root.1
[2025-12-02 00:09:31] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  1 20:34 start_atlas.sh
[2025-12-02 00:09:31] drwxrwx--x 2 mf493845 unix-user       100 Dec  1 20:34 shared
[2025-12-02 00:09:31] -rw-r--r-- 2 mf493845 unix-user    590124 Dec  1 20:34 input.tar.gz
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user      6390 Dec  1 20:34 init_data.xml
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user         0 Dec  1 20:34 boinc_setup_complete
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user      8192 Dec  1 20:34 boinc_mmap_file
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user         0 Dec  1 20:34 boinc_lockfile
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user      2882 Dec  1 20:34 pandaJob.out
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user    992004 Dec  1 20:35 agis_schedconf.cvmfs.json
[2025-12-02 00:09:31] drwx------ 5 mf493845 unix-user       440 Dec  1 20:35 pilot3
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user 678472611 Dec  2 00:08 HITS.47538113._001322.pool.root.1
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user      1024 Dec  2 00:08 memory_monitor_summary.json
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user        95 Dec  2 00:08 pilot_heartbeat.json
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user   1516240 Dec  2 00:08 agis_ddmendpoints.agis.ALL.json
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user   1617156 Dec  2 00:08 log.47538113._001322.job.log.tgz.1
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user     27720 Dec  2 00:08 heartbeat.json
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user      5093 Dec  2 00:09 pilotlog.txt
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user   1848982 Dec  2 00:09 log.47538113._001322.job.log.1
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user       353 Dec  2 00:09 output.list
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user       620 Dec  2 00:09 runtime_log
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user   3502080 Dec  2 00:09 result.tar.gz
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user      9221 Dec  2 00:09 runtime_log.err
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user       650 Dec  2 00:09 DcGLDmKwAj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBdOKDmbTiRKm.diag
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user     21611 Dec  2 00:09 stderr.txt
[2025-12-02 00:09:31] HITS file was successfully produced:
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user 678472611 Dec  2 00:08 shared/HITS.pool.root.1
[2025-12-02 00:09:31]  *** Contents of shared directory: ***
[2025-12-02 00:09:31] total 1034092
[2025-12-02 00:09:31] -rw-r--r-- 2 mf493845 unix-user 376324053 Dec  1 20:34 ATLAS.root_0
[2025-12-02 00:09:31] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  1 20:34 start_atlas.sh
[2025-12-02 00:09:31] -rw-r--r-- 2 mf493845 unix-user    590124 Dec  1 20:34 input.tar.gz
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user 678472611 Dec  2 00:08 HITS.pool.root.1
[2025-12-02 00:09:31] -rw------- 1 mf493845 unix-user   3502080 Dec  2 00:09 result.tar.gz
00:09:33 (13539): run_atlas exited; CPU time 97484.212475
00:09:33 (13539): called boinc_finish(0)

</stderr_txt>
]]>

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