Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
20:52:51 (22198): wrapper (7.7.26015): starting
20:52:51 (22198): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 20:52:51] Arguments: --nthreads 8
[2025-12-01 20:52:51] Threads: 8
[2025-12-01 20:52:51] Checking for CVMFS
[2025-12-01 20:52:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 20:52:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 20:52:51] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 20:52:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 20:52:52] 2.11.0.0 4571 73198 106500 153530 3 76 2343078 4096000 1832 130560 1 7849930 99.469 7901586 707 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-12-01 20:52:52] CVMFS is ok
[2025-12-01 20:52:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 20:52:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 20:52:52] Further information can be found at the LHC@home message board.
[2025-12-01 20:52:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 20:52:52] Checking for apptainer binary...
[2025-12-01 20:52:52] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-12-01 20:52:52] apptainer is not installed, using version from CVMFS
[2025-12-01 20:52:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 20:52:52] WARNING: Environment variable TMPDIR already has value [/tmp/job_10941510/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node009
[2025-12-01 20:52:52] apptainer works
[2025-12-01 20:52:52] Set ATHENA_PROC_NUMBER=8
[2025-12-01 20:52:52] Set ATHENA_CORE_NUMBER=8
[2025-12-01 20:52:52] Starting ATLAS job with PandaID=6895334470
[2025-12-01 20:52:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10941510/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 01:29:49]  *** The last 200 lines of the pilot log: ***
[2025-12-02 01:29:49] 2025-12-02 00:29:15,434 | INFO     | monitor loop #1215: job 0:6895334470 is in state 'finished'
[2025-12-02 01:29:49] 2025-12-02 00:29:15,434 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-02 01:29:49] 2025-12-02 00:29:16,044 | INFO     | time since job start (16580s) is within the limit (172800.0s)
[2025-12-02 01:29:49] 2025-12-02 00:29:16,711 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-02 01:29:49] 2025-12-02 00:29:16,715 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2426.316625
[2025-12-02 01:29:49] 2025-12-02 00:29:16,720 | INFO     | using path: /tmp/job_10941510/atlas/pilot/slots/0/PanDA_Pilot-6895334470/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 01:29:49] 2025-12-02 00:29:16,720 | INFO     | extracted standard info from prmon json
[2025-12-02 01:29:49] 2025-12-02 00:29:16,720 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 01:29:49] 2025-12-02 00:29:16,720 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 01:29:49] 2025-12-02 00:29:16,723 | INFO     | fitting pss+swap vs Time
[2025-12-02 01:29:49] 2025-12-02 00:29:16,723 | INFO     | sum of square deviations: 6239923508.0
[2025-12-02 01:29:49] 2025-12-02 00:29:16,724 | INFO     | sum of deviations: 414197293312.50006
[2025-12-02 01:29:49] 2025-12-02 00:29:16,724 | INFO     | mean x: 1764627058.5
[2025-12-02 01:29:49] 2025-12-02 00:29:16,724 | INFO     | mean y: 3084055.7536764704
[2025-12-02 01:29:49] 2025-12-02 00:29:16,724 | INFO     | intersect: -117130363237.25099
[2025-12-02 01:29:49] 2025-12-02 00:29:16,724 | INFO     | chi2: 4.533323696415267
[2025-12-02 01:29:49] 2025-12-02 00:29:16,725 | INFO     | sum of square deviations: 5902093918.0
[2025-12-02 01:29:49] 2025-12-02 00:29:16,726 | INFO     | sum of deviations: 448918888744.9999
[2025-12-02 01:29:49] 2025-12-02 00:29:16,726 | INFO     | mean x: 1764626906.0
[2025-12-02 01:29:49] 2025-12-02 00:29:16,726 | INFO     | mean y: 3099466.104868914
[2025-12-02 01:29:49] 2025-12-02 00:29:16,726 | INFO     | intersect: -134216104886.96408
[2025-12-02 01:29:49] 2025-12-02 00:29:16,726 | INFO     | chi2: 3.030923561760349
[2025-12-02 01:29:49] 2025-12-02 00:29:16,726 | INFO     | current chi2=3.030923561760349 (change=33.141249892279774 %)
[2025-12-02 01:29:49] 2025-12-02 00:29:16,726 | INFO     | sum of square deviations: 5576683165.5
[2025-12-02 01:29:49] 2025-12-02 00:29:16,727 | INFO     | sum of deviations: 387400804673.5
[2025-12-02 01:29:49] 2025-12-02 00:29:16,727 | INFO     | mean x: 1764626753.5
[2025-12-02 01:29:49] 2025-12-02 00:29:16,727 | INFO     | mean y: 3070639.5534351147
[2025-12-02 01:29:49] 2025-12-02 00:29:16,727 | INFO     | intersect: -122581950593.76123
[2025-12-02 01:29:49] 2025-12-02 00:29:16,727 | INFO     | chi2: 2.6738588737530753
[2025-12-02 01:29:49] 2025-12-02 00:29:16,727 | INFO     | current chi2=2.6738588737530753 (change=11.780722302343111 %)
[2025-12-02 01:29:49] 2025-12-02 00:29:16,728 | INFO     | right removable region: 261
[2025-12-02 01:29:49] 2025-12-02 00:29:16,728 | INFO     | sum of square deviations: 5902093918.0
[2025-12-02 01:29:49] 2025-12-02 00:29:16,729 | INFO     | sum of deviations: 360898643443.9999
[2025-12-02 01:29:49] 2025-12-02 00:29:16,729 | INFO     | mean x: 1764627211.0
[2025-12-02 01:29:49] 2025-12-02 00:29:16,729 | INFO     | mean y: 3107941.606741573
[2025-12-02 01:29:49] 2025-12-02 00:29:16,729 | INFO     | intersect: -107899540759.39432
[2025-12-02 01:29:49] 2025-12-02 00:29:16,729 | INFO     | chi2: 3.2999249470973537
[2025-12-02 01:29:49] 2025-12-02 00:29:16,729 | INFO     | current chi2=3.2999249470973537 (change=27.207383189804542 %)
[2025-12-02 01:29:49] 2025-12-02 00:29:16,729 | INFO     | sum of square deviations: 5576683165.5
[2025-12-02 01:29:49] 2025-12-02 00:29:16,730 | INFO     | sum of deviations: 344208297200.5
[2025-12-02 01:29:49] 2025-12-02 00:29:16,730 | INFO     | mean x: 1764627363.5
[2025-12-02 01:29:49] 2025-12-02 00:29:16,730 | INFO     | mean y: 3115760.5229007634
[2025-12-02 01:29:49] 2025-12-02 00:29:16,730 | INFO     | intersect: -108914561998.43651
[2025-12-02 01:29:49] 2025-12-02 00:29:16,730 | INFO     | chi2: 3.2941850512507753
[2025-12-02 01:29:49] 2025-12-02 00:29:16,731 | INFO     | current chi2=3.2941850512507753 (change=0.1739401937497785 %)
[2025-12-02 01:29:49] 2025-12-02 00:29:16,731 | INFO     | left removable region: 20
[2025-12-02 01:29:49] 2025-12-02 00:29:16,731 | INFO     | sum of square deviations: 4340323240.0
[2025-12-02 01:29:49] 2025-12-02 00:29:16,732 | INFO     | sum of deviations: 285722523128.99994
[2025-12-02 01:29:49] 2025-12-02 00:29:16,732 | INFO     | mean x: 1764627333.0
[2025-12-02 01:29:49] 2025-12-02 00:29:16,732 | INFO     | mean y: 3110297.44813278
[2025-12-02 01:29:49] 2025-12-02 00:29:16,732 | INFO     | intersect: -116161918454.45605
[2025-12-02 01:29:49] 2025-12-02 00:29:16,732 | INFO     | chi2: 1.3041272748885135
[2025-12-02 01:29:49] 2025-12-02 00:29:16,732 | INFO     | current memory leak: 65.83 B/s (using 241 data points, chi2=1.30)
[2025-12-02 01:29:49] 2025-12-02 00:29:16,732 | INFO     | could have reported an average CPU frequency of 2707 MHz (12 samples)
[2025-12-02 01:29:49] 2025-12-02 00:29:16,732 | INFO     | ..............................
[2025-12-02 01:29:49] 2025-12-02 00:29:16,732 | INFO     | . Timing measurements:
[2025-12-02 01:29:49] 2025-12-02 00:29:16,732 | INFO     | . get job = 0 s
[2025-12-02 01:29:49] 2025-12-02 00:29:16,732 | INFO     | . initial setup = 1 s
[2025-12-02 01:29:49] 2025-12-02 00:29:16,732 | INFO     | . payload setup = 2 s
[2025-12-02 01:29:49] 2025-12-02 00:29:16,732 | INFO     | . stage-in = 0 s
[2025-12-02 01:29:49] 2025-12-02 00:29:16,732 | INFO     | . payload execution = 16556 s
[2025-12-02 01:29:49] 2025-12-02 00:29:16,732 | INFO     | . stage-out = 1 s
[2025-12-02 01:29:49] 2025-12-02 00:29:16,732 | INFO     | . log creation = 0 s
[2025-12-02 01:29:49] 2025-12-02 00:29:16,732 | INFO     | ..............................
[2025-12-02 01:29:49] 2025-12-02 00:29:16,946 | INFO     | 
[2025-12-02 01:29:49] 2025-12-02 00:29:16,946 | INFO     | job summary report
[2025-12-02 01:29:49] 2025-12-02 00:29:16,947 | INFO     | --------------------------------------------------
[2025-12-02 01:29:49] 2025-12-02 00:29:16,947 | INFO     | PanDA job id: 6895334470
[2025-12-02 01:29:49] 2025-12-02 00:29:16,947 | INFO     | task id: 47556137
[2025-12-02 01:29:49] 2025-12-02 00:29:16,947 | INFO     | errors: (none)
[2025-12-02 01:29:49] 2025-12-02 00:29:16,947 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 01:29:49] 2025-12-02 00:29:16,947 | INFO     | pilot state: finished 
[2025-12-02 01:29:49] 2025-12-02 00:29:16,947 | INFO     | transexitcode: 0
[2025-12-02 01:29:49] 2025-12-02 00:29:16,947 | INFO     | exeerrorcode: 0
[2025-12-02 01:29:49] 2025-12-02 00:29:16,947 | INFO     | exeerrordiag: 
[2025-12-02 01:29:49] 2025-12-02 00:29:16,947 | INFO     | exitcode: 0
[2025-12-02 01:29:49] 2025-12-02 00:29:16,947 | INFO     | exitmsg: OK
[2025-12-02 01:29:49] 2025-12-02 00:29:16,947 | INFO     | cpuconsumptiontime: 121194 s
[2025-12-02 01:29:49] 2025-12-02 00:29:16,947 | INFO     | nevents: 1000
[2025-12-02 01:29:49] 2025-12-02 00:29:16,947 | INFO     | neventsw: 0
[2025-12-02 01:29:49] 2025-12-02 00:29:16,947 | INFO     | pid: 32551
[2025-12-02 01:29:49] 2025-12-02 00:29:16,947 | INFO     | pgrp: 32551
[2025-12-02 01:29:49] 2025-12-02 00:29:16,947 | INFO     | corecount: 8
[2025-12-02 01:29:49] 2025-12-02 00:29:16,947 | INFO     | event service: False
[2025-12-02 01:29:49] 2025-12-02 00:29:16,947 | INFO     | sizes: {0: 2284441, 1: 2284441, 2: 2284731, 11: 2284759, 16561: 2317628, 16562: 2326652, 16565: 2326836, 16567: 2327082}
[2025-12-02 01:29:49] 2025-12-02 00:29:16,947 | INFO     | --------------------------------------------------
[2025-12-02 01:29:49] 2025-12-02 00:29:16,947 | INFO     | 
[2025-12-02 01:29:49] 2025-12-02 00:29:16,947 | INFO     | executing command: ls -lF /tmp/job_10941510/atlas/pilot/slots/0
[2025-12-02 01:29:49] 2025-12-02 00:29:16,956 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 01:29:49] 2025-12-02 00:29:16,956 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 01:29:49] 2025-12-02 00:29:16,956 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 01:29:49] 2025-12-02 00:29:16,956 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 01:29:49] 2025-12-02 00:29:16,956 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 01:29:49] 2025-12-02 00:29:16,956 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 01:29:49] 2025-12-02 00:29:16,956 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 01:29:49] 2025-12-02 00:29:16,957 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 01:29:49] 2025-12-02 00:29:16,957 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 01:29:49] 2025-12-02 00:29:16,957 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 01:29:49] 2025-12-02 00:29:16,957 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 01:29:49] 2025-12-02 00:29:16,957 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 01:29:49] 2025-12-02 00:29:16,957 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 01:29:49] 2025-12-02 00:29:16,957 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 01:29:49] 2025-12-02 00:29:16,957 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 01:29:49] 2025-12-02 00:29:16,957 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 01:29:49] 2025-12-02 00:29:16,957 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 01:29:49] 2025-12-02 00:29:16,957 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 01:29:49] 2025-12-02 00:29:16,957 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 01:29:49] 2025-12-02 00:29:16,957 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 01:29:49] 2025-12-02 00:29:16,957 | INFO     | job 6895334470 has completed (purged errors)
[2025-12-02 01:29:49] 2025-12-02 00:29:16,957 | INFO     | overall cleanup function is called
[2025-12-02 01:29:49] 2025-12-02 00:29:17,965 | INFO     | --- collectZombieJob: --- 10, [32551]
[2025-12-02 01:29:49] 2025-12-02 00:29:17,965 | INFO     | zombie collector waiting for pid 32551
[2025-12-02 01:29:49] 2025-12-02 00:29:17,965 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 01:29:49] 2025-12-02 00:29:17,965 | INFO     | collected zombie processes
[2025-12-02 01:29:49] 2025-12-02 00:29:17,965 | INFO     | will attempt to kill all subprocesses of pid=32551
[2025-12-02 01:29:49] 2025-12-02 00:29:18,064 | INFO     | process IDs to be killed: [32551] (in reverse order)
[2025-12-02 01:29:49] 2025-12-02 00:29:18,098 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 01:29:49] 2025-12-02 00:29:18,098 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 01:29:49] 2025-12-02 00:29:18,102 | INFO     | did not find any defunct processes belonging to 32551
[2025-12-02 01:29:49] 2025-12-02 00:29:18,105 | INFO     | did not find any defunct processes belonging to 32551
[2025-12-02 01:29:49] 2025-12-02 00:29:18,105 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 01:29:49] 2025-12-02 00:29:18,106 | INFO     | ready for new job
[2025-12-02 01:29:49] 2025-12-02 00:29:18,106 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 01:29:49] 2025-12-02 00:29:18,107 | INFO     | ***************************************
[2025-12-02 01:29:49] 2025-12-02 00:29:18,107 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 01:29:49] 2025-12-02 00:29:18,107 | INFO     | ***************************************
[2025-12-02 01:29:49] 2025-12-02 00:29:18,107 | INFO     | 
[2025-12-02 01:29:49] 2025-12-02 00:29:18,121 | INFO     | architecture information:
[2025-12-02 01:29:49] 2025-12-02 00:29:18,121 | INFO     | executing command: cat /etc/os-release
[2025-12-02 01:29:49] 2025-12-02 00:29:18,127 | INFO     | cat /etc/os-release:
[2025-12-02 01:29:49] NAME="CentOS Linux"
[2025-12-02 01:29:49] VERSION="7 (Core)"
[2025-12-02 01:29:49] ID="centos"
[2025-12-02 01:29:49] ID_LIKE="rhel fedora"
[2025-12-02 01:29:49] VERSION_ID="7"
[2025-12-02 01:29:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 01:29:49] ANSI_COLOR="0;31"
[2025-12-02 01:29:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 01:29:49] HOME_URL="https://www.centos.org/"
[2025-12-02 01:29:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 01:29:49] 
[2025-12-02 01:29:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 01:29:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 01:29:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 01:29:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 01:29:49] 
[2025-12-02 01:29:49] 2025-12-02 00:29:18,127 | INFO     | ***************************************
[2025-12-02 01:29:49] 2025-12-02 00:29:18,630 | INFO     | executing command: df -mP /tmp/job_10941510/atlas/pilot/slots/0
[2025-12-02 01:29:49] 2025-12-02 00:29:18,636 | INFO     | sufficient remaining disk space (225818181632 B)
[2025-12-02 01:29:49] 2025-12-02 00:29:18,636 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 01:29:49] 2025-12-02 00:29:18,636 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 01:29:49] 2025-12-02 00:29:18,636 | INFO     | update_server=False
[2025-12-02 01:29:49] 2025-12-02 00:29:18,636 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 01:29:49] 2025-12-02 00:29:18,636 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 01:29:49] 2025-12-02 00:29:18,942 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 01:29:49] 2025-12-02 00:29:18,942 | INFO     | aborting loop
[2025-12-02 01:29:49] 2025-12-02 00:29:19,058 | INFO     | all job control threads have been joined
[2025-12-02 01:29:49] 2025-12-02 00:29:19,410 | INFO     | all payload control threads have been joined
[2025-12-02 01:29:49] 2025-12-02 00:29:19,641 | INFO     | [job] retrieve thread has finished
[2025-12-02 01:29:49] 2025-12-02 00:29:19,641 | INFO     | [data] copytool_in thread has finished
[2025-12-02 01:29:49] 2025-12-02 00:29:19,642 | INFO     | [job] queue monitor thread has finished
[2025-12-02 01:29:49] 2025-12-02 00:29:19,665 | INFO     | all data control threads have been joined
[2025-12-02 01:29:49] 2025-12-02 00:29:19,691 | INFO     | [payload] validate_post thread has finished
[2025-12-02 01:29:49] 2025-12-02 00:29:19,945 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 01:29:49] 2025-12-02 00:29:19,947 | INFO     | [job] job monitor thread has finished
[2025-12-02 01:29:49] 2025-12-02 00:29:20,063 | INFO     | [job] control thread has finished
[2025-12-02 01:29:49] 2025-12-02 00:29:20,194 | INFO     | [payload] failed_post thread has finished
[2025-12-02 01:29:49] 2025-12-02 00:29:20,415 | INFO     | [payload] control thread has finished
[2025-12-02 01:29:49] 2025-12-02 00:29:20,480 | INFO     | [job] validate thread has finished
[2025-12-02 01:29:49] 2025-12-02 00:29:20,646 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 01:29:49] 2025-12-02 00:29:20,670 | INFO     | [data] control thread has finished
[2025-12-02 01:29:49] 2025-12-02 00:29:20,764 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 01:29:49] 2025-12-02 00:29:20,773 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 01:29:49] 2025-12-02 00:29:20,973 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 01:29:49] 2025-12-02 00:29:20,986 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 01:29:49] 2025-12-02 00:29:21,950 | INFO     | [data] copytool_out thread has finished
[2025-12-02 01:29:49] 2025-12-02 00:29:23,098 | INFO     | [monitor] cgroup control has ended
[2025-12-02 01:29:49] 2025-12-02 00:29:24,769 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 01:29:49] 2025-12-02 00:29:25,715 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-12-02 01:29:49] 2025-12-02 00:29:30,740 | INFO     | all workflow threads have been joined
[2025-12-02 01:29:49] 2025-12-02 00:29:30,741 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 01:29:49] 2025-12-02 00:29:30,741 | INFO     | traces error code: 0
[2025-12-02 01:29:49] 2025-12-02 00:29:30,741 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 01:29:49] 2025-12-02 00:29:49,248 | INFO     | PID=25956 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 01:29:49] 2025-12-02 00:29:49,249 | INFO     | .. there are 2 such processes running
[2025-12-02 01:29:49] 2025-12-02 00:29:49,249 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 01:29:49] 2025-12-02 00:29:49,249 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 01:29:49] 2025-12-02 00:29:49,249 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 01:29:49] 2025-12-02 00:29:49,249 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 01:29:49] 2025-12-02 00:29:49,249 | INFO     | [monitor] control thread has ended
[2025-12-02 01:29:49] 2025-12-02 00:29:49,297 [wrapper] ==== pilot stdout END ====
[2025-12-02 01:29:49] 2025-12-02 00:29:49,298 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 01:29:49] 2025-12-02 00:29:49,299 [wrapper] pilotpid: 25956
[2025-12-02 01:29:49] 2025-12-02 00:29:49,300 [wrapper] Pilot exit status: 0
[2025-12-02 01:29:49] 2025-12-02 00:29:49,305 [wrapper] pandaids: 6895334470
[2025-12-02 01:29:49] 2025-12-02 00:29:49,326 [wrapper] cleanup supervisor_pilot 21881 25957
[2025-12-02 01:29:49] 2025-12-02 00:29:49,327 [wrapper] Test setup, not cleaning
[2025-12-02 01:29:49] 2025-12-02 00:29:49,328 [wrapper] apfmon messages muted
[2025-12-02 01:29:49] 2025-12-02 00:29:49,330 [wrapper] ==== wrapper stdout END ====
[2025-12-02 01:29:49] 2025-12-02 00:29:49,331 [wrapper] ==== wrapper stderr END ====
[2025-12-02 01:29:49]  *** Error codes and diagnostics ***
[2025-12-02 01:29:49]     "exeErrorCode": 0,
[2025-12-02 01:29:49]     "exeErrorDiag": "",
[2025-12-02 01:29:49]     "pilotErrorCode": 0,
[2025-12-02 01:29:49]     "pilotErrorDiag": "",
[2025-12-02 01:29:49]  *** Listing of results directory ***
[2025-12-02 01:29:49] total 1313060
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user    576529 Nov 22 04:44 pilot3.tar.gz
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user      5112 Nov 22 04:47 queuedata.json
[2025-12-02 01:29:49] -rwx------ 1 mf493845 unix-user     36292 Nov 22 04:48 runpilot2-wrapper.sh
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user       100 Dec  1 19:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 01:29:49] -rwxr-xr-x 1 mf493845 unix-user      7986 Dec  1 19:08 run_atlas
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user       105 Dec  1 19:08 job.xml
[2025-12-02 01:29:49] -rw-r--r-- 2 mf493845 unix-user 410569996 Dec  1 20:52 EVNT.47483658._000237.pool.root.1
[2025-12-02 01:29:49] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  1 20:52 start_atlas.sh
[2025-12-02 01:29:49] drwxrwx--x 2 mf493845 unix-user       100 Dec  1 20:52 shared
[2025-12-02 01:29:49] -rw-r--r-- 2 mf493845 unix-user    590098 Dec  1 20:52 input.tar.gz
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user      6390 Dec  1 20:52 init_data.xml
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user         0 Dec  1 20:52 boinc_setup_complete
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user      8192 Dec  1 20:52 boinc_mmap_file
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user         0 Dec  1 20:52 boinc_lockfile
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user      2786 Dec  1 20:52 pandaJob.out
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user    992004 Dec  1 20:52 agis_schedconf.cvmfs.json
[2025-12-02 01:29:49] drwx------ 5 mf493845 unix-user       440 Dec  1 20:52 pilot3
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user 922212321 Dec  2 01:28 HITS.47556137._002332.pool.root.1
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user      1027 Dec  2 01:29 memory_monitor_summary.json
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user   1516240 Dec  2 01:29 agis_ddmendpoints.agis.ALL.json
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user   1567679 Dec  2 01:29 log.47556137._002332.job.log.tgz.1
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user      8585 Dec  2 01:29 heartbeat.json
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user       820 Dec  2 01:29 pilotlog.txt
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user        95 Dec  2 01:29 pilot_heartbeat.json
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user   2387068 Dec  2 01:29 log.47556137._002332.job.log.1
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user       353 Dec  2 01:29 output.list
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user       620 Dec  2 01:29 runtime_log
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user   3973120 Dec  2 01:29 result.tar.gz
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user      9221 Dec  2 01:29 runtime_log.err
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user       651 Dec  2 01:29 o6jMDm5mtg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtvHKDmuuegjm.diag
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user     21723 Dec  2 01:29 stderr.txt
[2025-12-02 01:29:49] HITS file was successfully produced:
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user 922212321 Dec  2 01:28 shared/HITS.pool.root.1
[2025-12-02 01:29:49]  *** Contents of shared directory: ***
[2025-12-02 01:29:49] total 1306024
[2025-12-02 01:29:49] -rw-r--r-- 2 mf493845 unix-user 410569996 Dec  1 20:52 ATLAS.root_0
[2025-12-02 01:29:49] -rw-r--r-- 2 mf493845 unix-user     15847 Dec  1 20:52 start_atlas.sh
[2025-12-02 01:29:49] -rw-r--r-- 2 mf493845 unix-user    590098 Dec  1 20:52 input.tar.gz
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user 922212321 Dec  2 01:28 HITS.pool.root.1
[2025-12-02 01:29:49] -rw------- 1 mf493845 unix-user   3973120 Dec  2 01:29 result.tar.gz
01:29:51 (22198): run_atlas exited; CPU time 121369.930000
01:29:51 (22198): called boinc_finish(0)

</stderr_txt>
]]>

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