Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:53:21 (358310): wrapper (7.7.26015): starting
06:53:21 (358310): wrapper: running run_atlas (--nthreads 4)
[2025-12-04 06:53:21] Arguments: --nthreads 4
[2025-12-04 06:53:21] Threads: 4
[2025-12-04 06:53:21] Checking for CVMFS
[2025-12-04 06:53:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-04 06:53:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-04 06:53:21] Running cvmfs_config stat atlas.cern.ch
[2025-12-04 06:53:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-04 06:53:21] 2.9.2.0 1682378 19562 100500 153625 3 81 29294552 36864000 0 130560 0 8268757 99.982 689451 1210 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-04 06:53:21] CVMFS is ok
[2025-12-04 06:53:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-04 06:53:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-04 06:53:21] Further information can be found at the LHC@home message board.
[2025-12-04 06:53:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-04 06:53:21] Checking for apptainer binary...
[2025-12-04 06:53:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-04 06:53:21] Running /usr/bin/apptainer --version
[2025-12-04 06:53:21] apptainer version 1.4.1-1.1
[2025-12-04 06:53:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-04 06:53:21] thA315b
[2025-12-04 06:53:21] apptainer works
[2025-12-04 06:53:21] Set ATHENA_PROC_NUMBER=4
[2025-12-04 06:53:21] Set ATHENA_CORE_NUMBER=4
[2025-12-04 06:53:21] Starting ATLAS job with PandaID=6895336073
[2025-12-04 06:53:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-04 12:50:02]  *** The last 200 lines of the pilot log: ***
[2025-12-04 12:50:02] 2025-12-04 11:49:27,096 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-04 12:50:02] 2025-12-04 11:49:27,096 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-04 12:50:02] 2025-12-04 11:49:27,096 | INFO     | job 6895336073 has completed (purged errors)
[2025-12-04 12:50:02] 2025-12-04 11:49:27,096 | INFO     | overall cleanup function is called
[2025-12-04 12:50:02] 2025-12-04 11:49:28,105 | INFO     | --- collectZombieJob: --- 10, [368685]
[2025-12-04 12:50:02] 2025-12-04 11:49:28,106 | INFO     | zombie collector waiting for pid 368685
[2025-12-04 12:50:02] 2025-12-04 11:49:28,106 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-04 12:50:02] 2025-12-04 11:49:28,106 | INFO     | collected zombie processes
[2025-12-04 12:50:02] 2025-12-04 11:49:28,106 | INFO     | will attempt to kill all subprocesses of pid=368685
[2025-12-04 12:50:02] 2025-12-04 11:49:28,155 | INFO     | process IDs to be killed: [368685] (in reverse order)
[2025-12-04 12:50:02] 2025-12-04 11:49:28,182 | WARNING  | found no corresponding commands to process id(s)
[2025-12-04 12:50:02] 2025-12-04 11:49:28,183 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-04 12:50:02] 2025-12-04 11:49:28,184 | INFO     | did not find any defunct processes belonging to 368685
[2025-12-04 12:50:02] 2025-12-04 11:49:28,185 | INFO     | did not find any defunct processes belonging to 368685
[2025-12-04 12:50:02] 2025-12-04 11:49:28,186 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-04 12:50:02] 2025-12-04 11:49:28,186 | INFO     | ready for new job
[2025-12-04 12:50:02] 2025-12-04 11:49:28,186 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-04 12:50:02] 2025-12-04 11:49:28,187 | INFO     | ***************************************
[2025-12-04 12:50:02] 2025-12-04 11:49:28,187 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-04 12:50:02] 2025-12-04 11:49:28,187 | INFO     | ***************************************
[2025-12-04 12:50:02] 2025-12-04 11:49:28,187 | INFO     | 
[2025-12-04 12:50:02] 2025-12-04 11:49:28,188 | INFO     | architecture information:
[2025-12-04 12:50:02] 2025-12-04 11:49:28,188 | INFO     | executing command: cat /etc/os-release
[2025-12-04 12:50:02] 2025-12-04 11:49:28,197 | INFO     | cat /etc/os-release:
[2025-12-04 12:50:02] NAME="CentOS Linux"
[2025-12-04 12:50:02] VERSION="7 (Core)"
[2025-12-04 12:50:02] ID="centos"
[2025-12-04 12:50:02] ID_LIKE="rhel fedora"
[2025-12-04 12:50:02] VERSION_ID="7"
[2025-12-04 12:50:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-04 12:50:02] ANSI_COLOR="0;31"
[2025-12-04 12:50:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-04 12:50:02] HOME_URL="https://www.centos.org/"
[2025-12-04 12:50:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-04 12:50:02] 
[2025-12-04 12:50:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-04 12:50:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-04 12:50:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-04 12:50:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-04 12:50:02] 
[2025-12-04 12:50:02] 2025-12-04 11:49:28,198 | INFO     | ***************************************
[2025-12-04 12:50:02] 2025-12-04 11:49:28,701 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-04 12:50:02] 2025-12-04 11:49:28,716 | INFO     | sufficient remaining disk space (329125986304 B)
[2025-12-04 12:50:02] 2025-12-04 11:49:28,716 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-04 12:50:02] 2025-12-04 11:49:28,716 | INFO     | current server update state: UPDATING_FINAL
[2025-12-04 12:50:02] 2025-12-04 11:49:28,716 | INFO     | update_server=False
[2025-12-04 12:50:02] 2025-12-04 11:49:28,716 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-04 12:50:02] 2025-12-04 11:49:28,716 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-04 12:50:02] 2025-12-04 11:49:28,959 | INFO     | all payload control threads have been joined
[2025-12-04 12:50:02] 2025-12-04 11:49:29,071 | INFO     | all data control threads have been joined
[2025-12-04 12:50:02] 2025-12-04 11:49:29,100 | INFO     | all job control threads have been joined
[2025-12-04 12:50:02] 2025-12-04 11:49:29,549 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-04 12:50:02] 2025-12-04 11:49:29,567 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-04 12:50:02] 2025-12-04 11:49:29,567 | INFO     | aborting loop
[2025-12-04 12:50:02] 2025-12-04 11:49:29,720 | INFO     | [job] retrieve thread has finished
[2025-12-04 12:50:02] 2025-12-04 11:49:29,722 | INFO     | [job] queue monitor thread has finished
[2025-12-04 12:50:02] 2025-12-04 11:49:29,823 | INFO     | [payload] validate_post thread has finished
[2025-12-04 12:50:02] 2025-12-04 11:49:29,835 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-04 12:50:02] 2025-12-04 11:49:29,965 | INFO     | [payload] control thread has finished
[2025-12-04 12:50:02] 2025-12-04 11:49:30,077 | INFO     | [data] control thread has finished
[2025-12-04 12:50:02] 2025-12-04 11:49:30,106 | INFO     | [job] control thread has finished
[2025-12-04 12:50:02] 2025-12-04 11:49:30,432 | INFO     | [payload] execute_payloads thread has finished
[2025-12-04 12:50:02] 2025-12-04 11:49:30,573 | INFO     | [job] job monitor thread has finished
[2025-12-04 12:50:02] 2025-12-04 11:49:30,620 | INFO     | [job] validate thread has finished
[2025-12-04 12:50:02] 2025-12-04 11:49:30,622 | INFO     | [payload] validate_pre thread has finished
[2025-12-04 12:50:02] 2025-12-04 11:49:30,622 | INFO     | [job] create_data_payload thread has finished
[2025-12-04 12:50:02] 2025-12-04 11:49:30,718 | INFO     | [data] copytool_in thread has finished
[2025-12-04 12:50:02] 2025-12-04 11:49:30,901 | INFO     | [payload] failed_post thread has finished
[2025-12-04 12:50:02] 2025-12-04 11:49:31,199 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-04 12:50:02] 2025-12-04 11:49:31,841 | INFO     | [data] copytool_out thread has finished
[2025-12-04 12:50:02] 2025-12-04 11:49:33,556 | INFO     | [data] queue_monitor thread has finished
[2025-12-04 12:50:02] 2025-12-04 11:49:56,853 | INFO     | [monitor] cgroup control has ended
[2025-12-04 12:50:02] 2025-12-04 11:49:57,724 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140530085910336)>', '<ExcThread(monitor, started 140529224369920)>']
[2025-12-04 12:50:02] 2025-12-04 11:49:58,359 | INFO     | PID=362104 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-04 12:50:02] 2025-12-04 11:49:58,359 | INFO     | found 0 job(s) in 20 queues
[2025-12-04 12:50:02] 2025-12-04 11:49:58,359 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-04 12:50:02] 2025-12-04 11:49:58,359 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-04 12:50:02] 2025-12-04 11:49:58,359 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-04 12:50:02] 2025-12-04 11:49:58,359 | INFO     | [monitor] control thread has ended
[2025-12-04 12:50:02] 2025-12-04 11:50:02,750 | INFO     | all workflow threads have been joined
[2025-12-04 12:50:02] 2025-12-04 11:50:02,750 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-04 12:50:02] 2025-12-04 11:50:02,751 | INFO     | traces error code: 0
[2025-12-04 12:50:02] 2025-12-04 11:50:02,751 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-04 12:50:02] 2025-12-04 11:50:02,804 [wrapper] ==== pilot stdout END ====
[2025-12-04 12:50:02] 2025-12-04 11:50:02,807 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-04 12:50:02] 2025-12-04 11:50:02,810 [wrapper] pilotpid: 362104
[2025-12-04 12:50:02] 2025-12-04 11:50:02,812 [wrapper] Pilot exit status: 0
[2025-12-04 12:50:02] 2025-12-04 11:50:02,820 [wrapper] pandaids: 6895336073
[2025-12-04 12:50:02] 2025-12-04 11:50:02,839 [wrapper] cleanup supervisor_pilot  407805 362105
[2025-12-04 12:50:02] 2025-12-04 11:50:02,842 [wrapper] Test setup, not cleaning
[2025-12-04 12:50:02] 2025-12-04 11:50:02,844 [wrapper] apfmon messages muted
[2025-12-04 12:50:02] 2025-12-04 11:50:02,847 [wrapper] ==== wrapper stdout END ====
[2025-12-04 12:50:02] 2025-12-04 11:50:02,849 [wrapper] ==== wrapper stderr END ====
[2025-12-04 12:50:02]  *** Error codes and diagnostics ***
[2025-12-04 12:50:02]     "exeErrorCode": 0,
[2025-12-04 12:50:02]     "exeErrorDiag": "",
[2025-12-04 12:50:02]     "pilotErrorCode": 0,
[2025-12-04 12:50:02]     "pilotErrorDiag": "",
[2025-12-04 12:50:02]  *** Listing of results directory ***
[2025-12-04 12:50:02] total 1303520
[2025-12-04 12:50:02] -rw-r--r-- 1 boinc boinc    576529 Nov 22 06:12 pilot3.tar.gz
[2025-12-04 12:50:02] -rw-r--r-- 1 boinc boinc      5112 Nov 22 06:12 queuedata.json
[2025-12-04 12:50:02] -rwx------ 1 boinc boinc     36292 Nov 22 06:12 runpilot2-wrapper.sh
[2025-12-04 12:50:02] -rw-r--r-- 1 boinc boinc       100 Dec  4 06:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-04 12:50:02] -rwxr-xr-x 1 boinc boinc      7986 Dec  4 06:53 run_atlas
[2025-12-04 12:50:02] -rw-r--r-- 1 boinc boinc       105 Dec  4 06:53 job.xml
[2025-12-04 12:50:02] -rw-r--r-- 2 boinc boinc 409949334 Dec  4 06:53 EVNT.47483658._000267.pool.root.1
[2025-12-04 12:50:02] drwxrwx--x 2 boinc boinc      4096 Dec  4 06:53 shared
[2025-12-04 12:50:02] -rw-r--r-- 2 boinc boinc    590100 Dec  4 06:53 input.tar.gz
[2025-12-04 12:50:02] -rw-r--r-- 2 boinc boinc     15847 Dec  4 06:53 start_atlas.sh
[2025-12-04 12:50:02] -rw-r--r-- 1 boinc boinc         0 Dec  4 06:53 boinc_setup_complete
[2025-12-04 12:50:02] -rw-r--r-- 1 boinc boinc      6444 Dec  4 06:53 init_data.xml
[2025-12-04 12:50:02] -rw-r--r-- 1 boinc boinc         0 Dec  4 06:53 boinc_lockfile
[2025-12-04 12:50:02] -rw-r--r-- 1 boinc boinc      2786 Dec  4 06:53 pandaJob.out
[2025-12-04 12:50:02] -rw------- 1 boinc boinc    985548 Dec  4 06:53 agis_schedconf.cvmfs.json
[2025-12-04 12:50:02] drwx------ 5 boinc boinc      4096 Dec  4 06:53 pilot3
[2025-12-04 12:50:02] -rw-r--r-- 1 boinc boinc       531 Dec  4 12:45 boinc_task_state.xml
[2025-12-04 12:50:02] -rw------- 1 boinc boinc 912515412 Dec  4 12:49 HITS.47556137._002639.pool.root.1
[2025-12-04 12:50:02] -rw------- 1 boinc boinc      1025 Dec  4 12:49 memory_monitor_summary.json
[2025-12-04 12:50:02] -rw------- 1 boinc boinc   1516240 Dec  4 12:49 agis_ddmendpoints.agis.ALL.json
[2025-12-04 12:50:02] -rw------- 1 boinc boinc   1207882 Dec  4 12:49 log.47556137._002639.job.log.tgz.1
[2025-12-04 12:50:02] -rw------- 1 boinc boinc        95 Dec  4 12:49 pilot_heartbeat.json
[2025-12-04 12:50:02] -rw------- 1 boinc boinc      8564 Dec  4 12:49 heartbeat.json
[2025-12-04 12:50:02] -rw-r--r-- 1 boinc boinc      8192 Dec  4 12:49 boinc_mmap_file
[2025-12-04 12:50:02] -rw-r--r-- 1 boinc boinc        28 Dec  4 12:49 wrapper_checkpoint.txt
[2025-12-04 12:50:02] -rw------- 1 boinc boinc      4751 Dec  4 12:50 pilotlog.txt
[2025-12-04 12:50:02] -rw------- 1 boinc boinc   3014614 Dec  4 12:50 log.47556137._002639.job.log.1
[2025-12-04 12:50:02] -rw------- 1 boinc boinc       353 Dec  4 12:50 output.list
[2025-12-04 12:50:02] -rw-r--r-- 1 boinc boinc       620 Dec  4 12:50 runtime_log
[2025-12-04 12:50:02] -rw------- 1 boinc boinc   4239360 Dec  4 12:50 result.tar.gz
[2025-12-04 12:50:02] -rw-r--r-- 1 boinc boinc      8903 Dec  4 12:50 runtime_log.err
[2025-12-04 12:50:02] -rw------- 1 boinc boinc       666 Dec  4 12:50 ETqLDmi6ug8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWyJKDmlWoKWm.diag
[2025-12-04 12:50:02] -rw-r--r-- 1 boinc boinc     11232 Dec  4 12:50 stderr.txt
[2025-12-04 12:50:02] HITS file was successfully produced:
[2025-12-04 12:50:02] -rw------- 1 boinc boinc 912515412 Dec  4 12:49 shared/HITS.pool.root.1
[2025-12-04 12:50:02]  *** Contents of shared directory: ***
[2025-12-04 12:50:02] total 1296220
[2025-12-04 12:50:02] -rw-r--r-- 2 boinc boinc 409949334 Dec  4 06:53 ATLAS.root_0
[2025-12-04 12:50:02] -rw-r--r-- 2 boinc boinc    590100 Dec  4 06:53 input.tar.gz
[2025-12-04 12:50:02] -rw-r--r-- 2 boinc boinc     15847 Dec  4 06:53 start_atlas.sh
[2025-12-04 12:50:02] -rw------- 1 boinc boinc 912515412 Dec  4 12:49 HITS.pool.root.1
[2025-12-04 12:50:02] -rw------- 1 boinc boinc   4239360 Dec  4 12:50 result.tar.gz
12:50:04 (358310): run_atlas exited; CPU time 83428.520149
12:50:04 (358310): called boinc_finish(0)

</stderr_txt>
]]>

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