Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:32:19 (6586): wrapper (7.7.26015): starting
09:32:19 (6586): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 09:32:19] Arguments: --nthreads 8
[2025-12-01 09:32:19] Threads: 8
[2025-12-01 09:32:19] Checking for CVMFS
[2025-12-01 09:32:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 09:32:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 09:32:19] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 09:32:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 09:32:19] 2.11.2.0 17210 124990 144720 153520 1 116 11837241 18432001 1858 130560 0 93091291 99.976 5273734 29624 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-01 09:32:19] CVMFS is ok
[2025-12-01 09:32:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 09:32:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 09:32:19] Further information can be found at the LHC@home message board.
[2025-12-01 09:32:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 09:32:19] Checking for apptainer binary...
[2025-12-01 09:32:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 09:32:19] Running /usr/bin/apptainer --version
[2025-12-01 09:32:19] apptainer version 1.3.2-1.el7
[2025-12-01 09:32:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 09:32:20] c-206-14.aglt2.org
[2025-12-01 09:32:20] apptainer works
[2025-12-01 09:32:20] Set ATHENA_PROC_NUMBER=8
[2025-12-01 09:32:20] Set ATHENA_CORE_NUMBER=8
[2025-12-01 09:32:20] Starting ATLAS job with PandaID=6901272983
[2025-12-01 09:32:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 02:19:28]  *** The last 200 lines of the pilot log: ***
[2025-12-02 02:19:28] 2025-12-02 07:18:55,217 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-02 02:19:28] 2025-12-02 07:18:55,221 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2550.0
[2025-12-02 02:19:28] 2025-12-02 07:18:55,224 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6901272983/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 02:19:28] 2025-12-02 07:18:55,224 | INFO     | extracted standard info from prmon json
[2025-12-02 02:19:28] 2025-12-02 07:18:55,225 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 02:19:28] 2025-12-02 07:18:55,225 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 02:19:28] 2025-12-02 07:18:55,240 | INFO     | fitting pss+swap vs Time
[2025-12-02 02:19:28] 2025-12-02 07:18:55,242 | INFO     | sum of square deviations: 300873982542.70874
[2025-12-02 02:19:28] 2025-12-02 07:18:55,260 | INFO     | sum of deviations: 1672563465809.948
[2025-12-02 02:19:28] 2025-12-02 07:18:55,260 | INFO     | mean x: 1764629746.0171716
[2025-12-02 02:19:28] 2025-12-02 07:18:55,260 | INFO     | mean y: 3368980.061616162
[2025-12-02 02:19:28] 2025-12-02 07:18:55,260 | INFO     | intersect: -9806237084.66634
[2025-12-02 02:19:28] 2025-12-02 07:18:55,261 | INFO     | chi2: 6.3449757943265395
[2025-12-02 02:19:28] 2025-12-02 07:18:55,262 | INFO     | sum of square deviations: 296338435053.8638
[2025-12-02 02:19:28] 2025-12-02 07:18:55,279 | INFO     | sum of deviations: 2043821243907.434
[2025-12-02 02:19:28] 2025-12-02 07:18:55,280 | INFO     | mean x: 1764629593.5197968
[2025-12-02 02:19:28] 2025-12-02 07:18:55,280 | INFO     | mean y: 3381455.387817259
[2025-12-02 02:19:28] 2025-12-02 07:18:55,280 | INFO     | intersect: -12167120323.120771
[2025-12-02 02:19:28] 2025-12-02 07:18:55,281 | INFO     | chi2: 3.3740611138854084
[2025-12-02 02:19:28] 2025-12-02 07:18:55,281 | INFO     | current chi2=3.3740611138854084 (change=46.823105032136155 %)
[2025-12-02 02:19:28] 2025-12-02 07:18:55,282 | INFO     | sum of square deviations: 291848702377.5063
[2025-12-02 02:19:28] 2025-12-02 07:18:55,303 | INFO     | sum of deviations: 2205409886104.691
[2025-12-02 02:19:28] 2025-12-02 07:18:55,303 | INFO     | mean x: 1764629441.022449
[2025-12-02 02:19:28] 2025-12-02 07:18:55,303 | INFO     | mean y: 3386940.6959183672
[2025-12-02 02:19:28] 2025-12-02 07:18:55,303 | INFO     | intersect: -13331368988.793701
[2025-12-02 02:19:28] 2025-12-02 07:18:55,305 | INFO     | chi2: 2.710632336571722
[2025-12-02 02:19:28] 2025-12-02 07:18:55,305 | INFO     | current chi2=2.710632336571722 (change=19.662618871467725 %)
[2025-12-02 02:19:28] 2025-12-02 07:18:55,305 | INFO     | right removable region: 979
[2025-12-02 02:19:28] 2025-12-02 07:18:55,306 | INFO     | sum of square deviations: 296338182879.9009
[2025-12-02 02:19:28] 2025-12-02 07:18:55,335 | INFO     | sum of deviations: 1348766227608.2012
[2025-12-02 02:19:28] 2025-12-02 07:18:55,335 | INFO     | mean x: 1764629898.5187817
[2025-12-02 02:19:28] 2025-12-02 07:18:55,335 | INFO     | mean y: 3379852.3675126904
[2025-12-02 02:19:28] 2025-12-02 07:18:55,336 | INFO     | intersect: -8028231829.325257
[2025-12-02 02:19:28] 2025-12-02 07:18:55,337 | INFO     | chi2: 3.9609565036074557
[2025-12-02 02:19:28] 2025-12-02 07:18:55,337 | INFO     | current chi2=3.9609565036074557 (change=37.57333941054263 %)
[2025-12-02 02:19:28] 2025-12-02 07:18:55,339 | INFO     | sum of square deviations: 291848318199.6691
[2025-12-02 02:19:28] 2025-12-02 07:18:55,366 | INFO     | sum of deviations: 1282140475810.3115
[2025-12-02 02:19:28] 2025-12-02 07:18:55,366 | INFO     | mean x: 1764630051.0183673
[2025-12-02 02:19:28] 2025-12-02 07:18:55,367 | INFO     | mean y: 3382114.4826530614
[2025-12-02 02:19:28] 2025-12-02 07:18:55,367 | INFO     | intersect: -7748944940.881646
[2025-12-02 02:19:28] 2025-12-02 07:18:55,368 | INFO     | chi2: 3.9210952976119415
[2025-12-02 02:19:28] 2025-12-02 07:18:55,368 | INFO     | current chi2=3.9210952976119415 (change=1.00635303516235 %)
[2025-12-02 02:19:28] 2025-12-02 07:18:55,368 | INFO     | left removable region: 20
[2025-12-02 02:19:28] 2025-12-02 07:18:55,370 | INFO     | sum of square deviations: 273486161695.17444
[2025-12-02 02:19:28] 2025-12-02 07:18:55,393 | INFO     | sum of deviations: 1755093531704.9333
[2025-12-02 02:19:28] 2025-12-02 07:18:55,394 | INFO     | mean x: 1764630020.5245047
[2025-12-02 02:19:28] 2025-12-02 07:18:55,394 | INFO     | mean y: 3403874.811261731
[2025-12-02 02:19:28] 2025-12-02 07:18:55,394 | INFO     | intersect: -11321084046.909967
[2025-12-02 02:19:28] 2025-12-02 07:18:55,395 | INFO     | chi2: 0.198100599686822
[2025-12-02 02:19:28] 2025-12-02 07:18:55,395 | INFO     | current memory leak: 6.42 B/s (using 959 data points, chi2=0.20)
[2025-12-02 02:19:28] 2025-12-02 07:18:55,396 | INFO     | could have reported an average CPU frequency of 2624 MHz (36 samples)
[2025-12-02 02:19:28] 2025-12-02 07:18:55,396 | INFO     | ..............................
[2025-12-02 02:19:28] 2025-12-02 07:18:55,397 | INFO     | . Timing measurements:
[2025-12-02 02:19:28] 2025-12-02 07:18:55,397 | INFO     | . get job = 0 s
[2025-12-02 02:19:28] 2025-12-02 07:18:55,397 | INFO     | . initial setup = 2 s
[2025-12-02 02:19:28] 2025-12-02 07:18:55,397 | INFO     | . payload setup = 9 s
[2025-12-02 02:19:28] 2025-12-02 07:18:55,397 | INFO     | . stage-in = 0 s
[2025-12-02 02:19:28] 2025-12-02 07:18:55,397 | INFO     | . payload execution = 60342 s
[2025-12-02 02:19:28] 2025-12-02 07:18:55,397 | INFO     | . stage-out = 3 s
[2025-12-02 02:19:28] 2025-12-02 07:18:55,398 | INFO     | . log creation = 0 s
[2025-12-02 02:19:28] 2025-12-02 07:18:55,398 | INFO     | ..............................
[2025-12-02 02:19:28] 2025-12-02 07:18:55,527 | INFO     | 
[2025-12-02 02:19:28] 2025-12-02 07:18:55,528 | INFO     | job summary report
[2025-12-02 02:19:28] 2025-12-02 07:18:55,528 | INFO     | --------------------------------------------------
[2025-12-02 02:19:28] 2025-12-02 07:18:55,528 | INFO     | PanDA job id: 6901272983
[2025-12-02 02:19:28] 2025-12-02 07:18:55,528 | INFO     | task id: 47531111
[2025-12-02 02:19:28] 2025-12-02 07:18:55,528 | INFO     | errors: (none)
[2025-12-02 02:19:28] 2025-12-02 07:18:55,528 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 02:19:28] 2025-12-02 07:18:55,528 | INFO     | pilot state: finished 
[2025-12-02 02:19:28] 2025-12-02 07:18:55,529 | INFO     | transexitcode: 0
[2025-12-02 02:19:28] 2025-12-02 07:18:55,529 | INFO     | exeerrorcode: 0
[2025-12-02 02:19:28] 2025-12-02 07:18:55,529 | INFO     | exeerrordiag: 
[2025-12-02 02:19:28] 2025-12-02 07:18:55,529 | INFO     | exitcode: 0
[2025-12-02 02:19:28] 2025-12-02 07:18:55,529 | INFO     | exitmsg: OK
[2025-12-02 02:19:28] 2025-12-02 07:18:55,529 | INFO     | cpuconsumptiontime: 464428 s
[2025-12-02 02:19:28] 2025-12-02 07:18:55,529 | INFO     | nevents: 1000
[2025-12-02 02:19:28] 2025-12-02 07:18:55,530 | INFO     | neventsw: 0
[2025-12-02 02:19:28] 2025-12-02 07:18:55,530 | INFO     | pid: 17394
[2025-12-02 02:19:28] 2025-12-02 07:18:55,530 | INFO     | pgrp: 17394
[2025-12-02 02:19:28] 2025-12-02 07:18:55,530 | INFO     | corecount: 8
[2025-12-02 02:19:28] 2025-12-02 07:18:55,530 | INFO     | event service: False
[2025-12-02 02:19:28] 2025-12-02 07:18:55,530 | INFO     | sizes: {0: 2284450, 1: 2284450, 4: 2284740, 12: 2284768, 60355: 2356179, 60356: 2356178, 60360: 2365356, 60363: 2365412, 60369: 2365658}
[2025-12-02 02:19:28] 2025-12-02 07:18:55,530 | INFO     | --------------------------------------------------
[2025-12-02 02:19:28] 2025-12-02 07:18:55,530 | INFO     | 
[2025-12-02 02:19:28] 2025-12-02 07:18:55,530 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-02 02:19:28] 2025-12-02 07:18:55,549 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 02:19:28] 2025-12-02 07:18:55,550 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 02:19:28] 2025-12-02 07:18:55,550 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 02:19:28] 2025-12-02 07:18:55,550 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 02:19:28] 2025-12-02 07:18:55,550 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 02:19:28] 2025-12-02 07:18:55,550 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 02:19:28] 2025-12-02 07:18:55,551 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 02:19:28] 2025-12-02 07:18:55,551 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 02:19:28] 2025-12-02 07:18:55,551 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 02:19:28] 2025-12-02 07:18:55,551 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 02:19:28] 2025-12-02 07:18:55,552 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 02:19:28] 2025-12-02 07:18:55,552 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 02:19:28] 2025-12-02 07:18:55,552 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 02:19:28] 2025-12-02 07:18:55,552 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 02:19:28] 2025-12-02 07:18:55,552 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 02:19:28] 2025-12-02 07:18:55,552 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 02:19:28] 2025-12-02 07:18:55,552 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 02:19:28] 2025-12-02 07:18:55,552 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 02:19:28] 2025-12-02 07:18:55,552 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 02:19:28] 2025-12-02 07:18:55,553 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 02:19:28] 2025-12-02 07:18:55,553 | INFO     | job 6901272983 has completed (purged errors)
[2025-12-02 02:19:28] 2025-12-02 07:18:55,553 | INFO     | overall cleanup function is called
[2025-12-02 02:19:28] 2025-12-02 07:18:56,196 | INFO     | PID=10297 has CPU usage=15.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-02 02:19:28] 2025-12-02 07:18:56,196 | INFO     | .. there are 3 such processes running
[2025-12-02 02:19:28] 2025-12-02 07:18:56,567 | INFO     | --- collectZombieJob: --- 10, [17394]
[2025-12-02 02:19:28] 2025-12-02 07:18:56,568 | INFO     | zombie collector waiting for pid 17394
[2025-12-02 02:19:28] 2025-12-02 07:18:56,568 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 02:19:28] 2025-12-02 07:18:56,568 | INFO     | collected zombie processes
[2025-12-02 02:19:28] 2025-12-02 07:18:56,568 | INFO     | will attempt to kill all subprocesses of pid=17394
[2025-12-02 02:19:28] 2025-12-02 07:18:56,739 | INFO     | process IDs to be killed: [17394] (in reverse order)
[2025-12-02 02:19:28] 2025-12-02 07:18:56,798 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 02:19:28] 2025-12-02 07:18:56,798 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 02:19:28] 2025-12-02 07:18:56,804 | INFO     | did not find any defunct processes belonging to 17394
[2025-12-02 02:19:28] 2025-12-02 07:18:56,810 | INFO     | did not find any defunct processes belonging to 17394
[2025-12-02 02:19:28] 2025-12-02 07:18:56,812 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 02:19:28] 2025-12-02 07:18:56,812 | INFO     | ready for new job
[2025-12-02 02:19:28] 2025-12-02 07:18:56,812 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 02:19:28] 2025-12-02 07:18:56,817 | INFO     | ***************************************
[2025-12-02 02:19:28] 2025-12-02 07:18:56,817 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 02:19:28] 2025-12-02 07:18:56,817 | INFO     | ***************************************
[2025-12-02 02:19:28] 2025-12-02 07:18:56,817 | INFO     | 
[2025-12-02 02:19:28] 2025-12-02 07:18:56,819 | INFO     | architecture information:
[2025-12-02 02:19:28] 2025-12-02 07:18:56,819 | INFO     | executing command: cat /etc/os-release
[2025-12-02 02:19:28] 2025-12-02 07:18:56,833 | INFO     | cat /etc/os-release:
[2025-12-02 02:19:28] NAME="CentOS Linux"
[2025-12-02 02:19:28] VERSION="7 (Core)"
[2025-12-02 02:19:28] ID="centos"
[2025-12-02 02:19:28] ID_LIKE="rhel fedora"
[2025-12-02 02:19:28] VERSION_ID="7"
[2025-12-02 02:19:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 02:19:28] ANSI_COLOR="0;31"
[2025-12-02 02:19:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 02:19:28] HOME_URL="https://www.centos.org/"
[2025-12-02 02:19:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 02:19:28] 
[2025-12-02 02:19:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 02:19:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 02:19:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 02:19:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 02:19:28] 
[2025-12-02 02:19:28] 2025-12-02 07:18:56,833 | INFO     | ***************************************
[2025-12-02 02:19:28] 2025-12-02 07:18:57,336 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-02 02:19:28] 2025-12-02 07:18:57,352 | INFO     | sufficient remaining disk space (25729957888 B)
[2025-12-02 02:19:28] 2025-12-02 07:18:57,352 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 02:19:28] 2025-12-02 07:18:57,352 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 02:19:28] 2025-12-02 07:18:57,352 | INFO     | update_server=False
[2025-12-02 02:19:28] 2025-12-02 07:18:57,353 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 02:19:28] 2025-12-02 07:18:57,353 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 02:19:28] 2025-12-02 07:18:57,409 | INFO     | all payload control threads have been joined
[2025-12-02 02:19:28] 2025-12-02 07:18:57,424 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 02:19:28] 2025-12-02 07:18:57,425 | INFO     | aborting loop
[2025-12-02 02:19:28] 2025-12-02 07:18:57,507 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 02:19:28] 2025-12-02 07:18:57,710 | INFO     | all job control threads have been joined
[2025-12-02 02:19:28] 2025-12-02 07:18:57,744 | INFO     | all data control threads have been joined
[2025-12-02 02:19:28] 2025-12-02 07:18:58,358 | INFO     | [job] queue monitor thread has finished
[2025-12-02 02:19:28] 2025-12-02 07:18:58,358 | INFO     | [job] retrieve thread has finished
[2025-12-02 02:19:28] 2025-12-02 07:18:58,389 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 02:19:28] 2025-12-02 07:18:58,411 | INFO     | [job] validate thread has finished
[2025-12-02 02:19:28] 2025-12-02 07:18:58,414 | INFO     | [payload] control thread has finished
[2025-12-02 02:19:28] 2025-12-02 07:18:58,432 | INFO     | [job] job monitor thread has finished
[2025-12-02 02:19:28] 2025-12-02 07:18:58,512 | INFO     | [payload] failed_post thread has finished
[2025-12-02 02:19:28] 2025-12-02 07:18:58,716 | INFO     | [job] control thread has finished
[2025-12-02 02:19:28] 2025-12-02 07:18:58,752 | INFO     | [data] control thread has finished
[2025-12-02 02:19:28] 2025-12-02 07:18:58,846 | INFO     | [data] copytool_in thread has finished
[2025-12-02 02:19:28] 2025-12-02 07:18:59,359 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 02:19:28] 2025-12-02 07:18:59,513 | INFO     | [data] copytool_out thread has finished
[2025-12-02 02:19:28] 2025-12-02 07:18:59,556 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 02:19:28] 2025-12-02 07:18:59,954 | INFO     | [payload] validate_post thread has finished
[2025-12-02 02:19:28] 2025-12-02 07:19:00,798 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 02:19:28] 2025-12-02 07:19:04,808 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 02:19:28] 2025-12-02 07:19:08,193 | INFO     | job.realtimelogging is not enabled
[2025-12-02 02:19:28] 2025-12-02 07:19:09,200 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 02:19:28] 2025-12-02 07:19:10,967 | INFO     | [monitor] cgroup control has ended
[2025-12-02 02:19:28] 2025-12-02 07:19:12,888 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139759919011648)>', '<ExcThread(monitor, started 139759460521728)>']
[2025-12-02 02:19:28] 2025-12-02 07:19:17,900 | INFO     | all workflow threads have been joined
[2025-12-02 02:19:28] 2025-12-02 07:19:17,900 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 02:19:28] 2025-12-02 07:19:17,900 | INFO     | traces error code: 0
[2025-12-02 02:19:28] 2025-12-02 07:19:17,901 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 02:19:28] 2025-12-02 07:19:28,405 | INFO     | PID=10297 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-02 02:19:28] 2025-12-02 07:19:28,406 | INFO     | .. there are 3 such processes running
[2025-12-02 02:19:28] 2025-12-02 07:19:28,406 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 02:19:28] 2025-12-02 07:19:28,406 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 02:19:28] 2025-12-02 07:19:28,406 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 02:19:28] 2025-12-02 07:19:28,407 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 02:19:28] 2025-12-02 07:19:28,407 | INFO     | [monitor] control thread has ended
[2025-12-02 02:19:28] 2025-12-02 07:19:28,502 [wrapper] ==== pilot stdout END ====
[2025-12-02 02:19:28] 2025-12-02 07:19:28,505 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 02:19:28] 2025-12-02 07:19:28,507 [wrapper] pilotpid: 10297
[2025-12-02 02:19:28] 2025-12-02 07:19:28,510 [wrapper] Pilot exit status: 0
[2025-12-02 02:19:28] 2025-12-02 07:19:28,518 [wrapper] pandaids: 6901272983
[2025-12-02 02:19:28] 2025-12-02 07:19:28,546 [wrapper] cleanup supervisor_pilot 32149 10298
[2025-12-02 02:19:28] 2025-12-02 07:19:28,548 [wrapper] Test setup, not cleaning
[2025-12-02 02:19:28] 2025-12-02 07:19:28,550 [wrapper] apfmon messages muted
[2025-12-02 02:19:28] 2025-12-02 07:19:28,552 [wrapper] ==== wrapper stdout END ====
[2025-12-02 02:19:28] 2025-12-02 07:19:28,554 [wrapper] ==== wrapper stderr END ====
[2025-12-02 02:19:28]  *** Error codes and diagnostics ***
[2025-12-02 02:19:28]     "exeErrorCode": 0,
[2025-12-02 02:19:28]     "exeErrorDiag": "",
[2025-12-02 02:19:28]     "pilotErrorCode": 0,
[2025-12-02 02:19:28]     "pilotErrorDiag": "",
[2025-12-02 02:19:28]  *** Listing of results directory ***
[2025-12-02 02:19:28] total 1085144
[2025-12-02 02:19:28] -rw-r--r-- 1 boincer umatlas    576529 Nov 29 04:19 pilot3.tar.gz
[2025-12-02 02:19:28] -rwx------ 1 boincer umatlas     36292 Nov 29 04:22 runpilot2-wrapper.sh
[2025-12-02 02:19:28] -rw-r--r-- 1 boincer umatlas      5112 Nov 29 04:26 queuedata.json
[2025-12-02 02:19:28] -rw-r--r-- 1 boincer umatlas       100 Dec  1 09:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 02:19:28] -rwxr-xr-x 1 boincer umatlas      7986 Dec  1 09:32 run_atlas
[2025-12-02 02:19:28] -rw-r--r-- 1 boincer umatlas       105 Dec  1 09:32 job.xml
[2025-12-02 02:19:28] -rw-r--r-- 2 boincer umatlas 378657779 Dec  1 09:32 EVNT.47531104._000087.pool.root.1
[2025-12-02 02:19:28] -rw-r--r-- 2 boincer umatlas     15847 Dec  1 09:32 start_atlas.sh
[2025-12-02 02:19:28] drwxrwx--x 2 boincer umatlas      4096 Dec  1 09:32 shared
[2025-12-02 02:19:28] -rw-r--r-- 2 boincer umatlas    590126 Dec  1 09:32 input.tar.gz
[2025-12-02 02:19:28] -rw-r--r-- 1 boincer umatlas         0 Dec  1 09:32 boinc_lockfile
[2025-12-02 02:19:28] -rw-r--r-- 1 boincer umatlas      2879 Dec  1 09:32 pandaJob.out
[2025-12-02 02:19:28] -rw------- 1 boincer umatlas        57 Dec  1 09:32 setup.sh.local
[2025-12-02 02:19:28] -rw------- 1 boincer umatlas    992150 Dec  1 09:32 agis_schedconf.cvmfs.json
[2025-12-02 02:19:28] drwx------ 5 boincer umatlas      4096 Dec  1 09:32 pilot3
[2025-12-02 02:19:28] -rw-r--r-- 1 boincer umatlas       533 Dec  2 02:04 boinc_task_state.xml
[2025-12-02 02:19:28] -rw-r--r-- 1 boincer umatlas      5954 Dec  2 02:18 init_data.xml
[2025-12-02 02:19:28] -rw------- 1 boincer umatlas 707259176 Dec  2 02:18 HITS.47531111._000857.pool.root.1
[2025-12-02 02:19:28] -rw------- 1 boincer umatlas      1066 Dec  2 02:18 memory_monitor_summary.json
[2025-12-02 02:19:28] -rw------- 1 boincer umatlas        95 Dec  2 02:18 pilot_heartbeat.json
[2025-12-02 02:19:28] -rw------- 1 boincer umatlas   1516240 Dec  2 02:18 agis_ddmendpoints.agis.ALL.json
[2025-12-02 02:19:28] -rw------- 1 boincer umatlas   2283369 Dec  2 02:18 log.47531111._000857.job.log.tgz.1
[2025-12-02 02:19:28] -rw------- 1 boincer umatlas     27887 Dec  2 02:18 heartbeat.json
[2025-12-02 02:19:28] -rw-r--r-- 1 boincer umatlas      8192 Dec  2 02:19 boinc_mmap_file
[2025-12-02 02:19:28] -rw-r--r-- 1 boincer umatlas        29 Dec  2 02:19 wrapper_checkpoint.txt
[2025-12-02 02:19:28] -rw------- 1 boincer umatlas       820 Dec  2 02:19 pilotlog.txt
[2025-12-02 02:19:28] -rw------- 1 boincer umatlas   8374680 Dec  2 02:19 log.47531111._000857.job.log.1
[2025-12-02 02:19:28] -rw------- 1 boincer umatlas       353 Dec  2 02:19 output.list
[2025-12-02 02:19:28] -rw-r--r-- 1 boincer umatlas       620 Dec  2 02:19 runtime_log
[2025-12-02 02:19:28] -rw------- 1 boincer umatlas  10700800 Dec  2 02:19 result.tar.gz
[2025-12-02 02:19:28] -rw-r--r-- 1 boincer umatlas      9343 Dec  2 02:19 runtime_log.err
[2025-12-02 02:19:28] -rw------- 1 boincer umatlas       668 Dec  2 02:19 JupNDmPLWj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbuLKDmREfBnm.diag
[2025-12-02 02:19:28] -rw-r--r-- 1 boincer umatlas     21348 Dec  2 02:19 stderr.txt
[2025-12-02 02:19:28] HITS file was successfully produced:
[2025-12-02 02:19:28] -rw------- 1 boincer umatlas 707259176 Dec  2 02:18 shared/HITS.pool.root.1
[2025-12-02 02:19:28]  *** Contents of shared directory: ***
[2025-12-02 02:19:28] total 1071520
[2025-12-02 02:19:28] -rw-r--r-- 2 boincer umatlas 378657779 Dec  1 09:32 ATLAS.root_0
[2025-12-02 02:19:28] -rw-r--r-- 2 boincer umatlas     15847 Dec  1 09:32 start_atlas.sh
[2025-12-02 02:19:28] -rw-r--r-- 2 boincer umatlas    590126 Dec  1 09:32 input.tar.gz
[2025-12-02 02:19:28] -rw------- 1 boincer umatlas 707259176 Dec  2 02:18 HITS.pool.root.1
[2025-12-02 02:19:28] -rw------- 1 boincer umatlas  10700800 Dec  2 02:19 result.tar.gz
02:19:30 (6586): run_atlas exited; CPU time 463177.542107
02:19:30 (6586): called boinc_finish(0)

</stderr_txt>
]]>

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