Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:41:32 (26473): wrapper (7.7.26015): starting
09:41:32 (26473): wrapper: running run_atlas (--nthreads 12)
[2025-12-01 09:41:32] Arguments: --nthreads 12
[2025-12-01 09:41:32] Threads: 12
[2025-12-01 09:41:32] Checking for CVMFS
[2025-12-01 09:41:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 09:41:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 09:41:33] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 09:41:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 09:41:33] 2.11.2.0 10903 13479 89128 153520 2 56 13757596 20275200 1 130560 0 5989325 99.782 1623585 41252 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-01 09:41:33] CVMFS is ok
[2025-12-01 09:41:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 09:41:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 09:41:33] Further information can be found at the LHC@home message board.
[2025-12-01 09:41:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 09:41:33] Checking for apptainer binary...
[2025-12-01 09:41:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 09:41:33] Running /usr/bin/apptainer --version
[2025-12-01 09:41:33] apptainer version 1.3.2-1.el7
[2025-12-01 09:41:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 09:41:34] c-205-22.aglt2.org
[2025-12-01 09:41:34] apptainer works
[2025-12-01 09:41:34] Set ATHENA_PROC_NUMBER=12
[2025-12-01 09:41:34] Set ATHENA_CORE_NUMBER=12
[2025-12-01 09:41:34] Starting ATLAS job with PandaID=6896912355
[2025-12-01 09:41:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 16:01:31]  *** The last 200 lines of the pilot log: ***
[2025-12-01 16:01:31] 2025-12-01 21:00:49,309 | INFO     | time since job start (22740s) is within the limit (172800.0s)
[2025-12-01 16:01:31] 2025-12-01 21:00:51,314 | INFO     | time since job start (22742s) is within the limit (172800.0s)
[2025-12-01 16:01:31] 2025-12-01 21:00:51,397 | INFO     | monitor loop #1712: job 0:6896912355 is in state 'finished'
[2025-12-01 16:01:31] 2025-12-01 21:00:51,397 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 16:01:31] 2025-12-01 21:00:52,528 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-01 16:01:31] 2025-12-01 21:00:52,531 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-12-01 16:01:31] 2025-12-01 21:00:52,533 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896912355/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 16:01:31] 2025-12-01 21:00:52,533 | INFO     | extracted standard info from prmon json
[2025-12-01 16:01:31] 2025-12-01 21:00:52,533 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 16:01:31] 2025-12-01 21:00:52,534 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 16:01:31] 2025-12-01 21:00:52,539 | INFO     | fitting pss+swap vs Time
[2025-12-01 16:01:31] 2025-12-01 21:00:52,540 | INFO     | sum of square deviations: 16091796250.5256
[2025-12-01 16:01:31] 2025-12-01 21:00:52,543 | INFO     | sum of deviations: 246561606128.17963
[2025-12-01 16:01:31] 2025-12-01 21:00:52,543 | INFO     | mean x: 1764611491.0965147
[2025-12-01 16:01:31] 2025-12-01 21:00:52,543 | INFO     | mean y: 3984369.522788204
[2025-12-01 16:01:31] 2025-12-01 21:00:52,544 | INFO     | intersect: -27033733276.37318
[2025-12-01 16:01:31] 2025-12-01 21:00:52,544 | INFO     | chi2: 7.167403835502574
[2025-12-01 16:01:31] 2025-12-01 21:00:52,544 | INFO     | sum of square deviations: 15453320840.478237
[2025-12-01 16:01:31] 2025-12-01 21:00:52,547 | INFO     | sum of deviations: 431288189430.5984
[2025-12-01 16:01:31] 2025-12-01 21:00:52,548 | INFO     | mean x: 1764611338.597826
[2025-12-01 16:01:31] 2025-12-01 21:00:52,548 | INFO     | mean y: 4028445.747282609
[2025-12-01 16:01:31] 2025-12-01 21:00:52,548 | INFO     | intersect: -49244675902.580246
[2025-12-01 16:01:31] 2025-12-01 21:00:52,548 | INFO     | chi2: 3.460863231718656
[2025-12-01 16:01:31] 2025-12-01 21:00:52,549 | INFO     | current chi2=3.460863231718656 (change=51.713851889078285 %)
[2025-12-01 16:01:31] 2025-12-01 21:00:52,549 | INFO     | sum of square deviations: 14831962030.429781
[2025-12-01 16:01:31] 2025-12-01 21:00:52,552 | INFO     | sum of deviations: 508944377815.52954
[2025-12-01 16:01:31] 2025-12-01 21:00:52,552 | INFO     | mean x: 1764611186.0991735
[2025-12-01 16:01:31] 2025-12-01 21:00:52,552 | INFO     | mean y: 4047448.7630853993
[2025-12-01 16:01:31] 2025-12-01 21:00:52,553 | INFO     | intersect: -60546872271.299324
[2025-12-01 16:01:31] 2025-12-01 21:00:52,553 | INFO     | chi2: 2.6159702036891472
[2025-12-01 16:01:31] 2025-12-01 21:00:52,553 | INFO     | current chi2=2.6159702036891472 (change=24.412782923234357 %)
[2025-12-01 16:01:31] 2025-12-01 21:00:52,553 | INFO     | right removable region: 362
[2025-12-01 16:01:31] 2025-12-01 21:00:52,554 | INFO     | sum of square deviations: 15453298880.478237
[2025-12-01 16:01:31] 2025-12-01 21:00:52,557 | INFO     | sum of deviations: 96439505873.47803
[2025-12-01 16:01:31] 2025-12-01 21:00:52,557 | INFO     | mean x: 1764611643.597826
[2025-12-01 16:01:31] 2025-12-01 21:00:52,557 | INFO     | mean y: 4020118.847826087
[2025-12-01 16:01:31] 2025-12-01 21:00:52,557 | INFO     | intersect: -11008403589.732752
[2025-12-01 16:01:31] 2025-12-01 21:00:52,557 | INFO     | chi2: 4.714501825032844
[2025-12-01 16:01:31] 2025-12-01 21:00:52,558 | INFO     | current chi2=4.714501825032844 (change=34.22301947491332 %)
[2025-12-01 16:01:31] 2025-12-01 21:00:52,558 | INFO     | sum of square deviations: 14831918110.429781
[2025-12-01 16:01:31] 2025-12-01 21:00:52,561 | INFO     | sum of deviations: 67979015501.41342
[2025-12-01 16:01:31] 2025-12-01 21:00:52,561 | INFO     | mean x: 1764611796.0991735
[2025-12-01 16:01:31] 2025-12-01 21:00:52,561 | INFO     | mean y: 4027091.377410468
[2025-12-01 16:01:31] 2025-12-01 21:00:52,561 | INFO     | intersect: -8083704498.554267
[2025-12-01 16:01:31] 2025-12-01 21:00:52,562 | INFO     | chi2: 4.670770114638618
[2025-12-01 16:01:31] 2025-12-01 21:00:52,562 | INFO     | current chi2=4.670770114638618 (change=0.9275998189675456 %)
[2025-12-01 16:01:31] 2025-12-01 21:00:52,562 | INFO     | left removable region: 20
[2025-12-01 16:01:31] 2025-12-01 21:00:52,563 | INFO     | sum of square deviations: 12403853277.918217
[2025-12-01 16:01:31] 2025-12-01 21:00:52,565 | INFO     | sum of deviations: 293627582536.18134
[2025-12-01 16:01:31] 2025-12-01 21:00:52,565 | INFO     | mean x: 1764611765.6023393
[2025-12-01 16:01:31] 2025-12-01 21:00:52,565 | INFO     | mean y: 4102555.523391813
[2025-12-01 16:01:31] 2025-12-01 21:00:52,566 | INFO     | intersect: -41768294718.08243
[2025-12-01 16:01:31] 2025-12-01 21:00:52,566 | INFO     | chi2: 0.03826174686750921
[2025-12-01 16:01:31] 2025-12-01 21:00:52,566 | INFO     | current memory leak: 23.67 B/s (using 342 data points, chi2=0.04)
[2025-12-01 16:01:31] 2025-12-01 21:00:52,566 | INFO     | could have reported an average CPU frequency of 2384 MHz (16 samples)
[2025-12-01 16:01:31] 2025-12-01 21:00:52,567 | INFO     | ..............................
[2025-12-01 16:01:31] 2025-12-01 21:00:52,567 | INFO     | . Timing measurements:
[2025-12-01 16:01:31] 2025-12-01 21:00:52,567 | INFO     | . get job = 0 s
[2025-12-01 16:01:31] 2025-12-01 21:00:52,567 | INFO     | . initial setup = 2 s
[2025-12-01 16:01:31] 2025-12-01 21:00:52,567 | INFO     | . payload setup = 13 s
[2025-12-01 16:01:31] 2025-12-01 21:00:52,567 | INFO     | . stage-in = 0 s
[2025-12-01 16:01:31] 2025-12-01 21:00:52,567 | INFO     | . payload execution = 22699 s
[2025-12-01 16:01:31] 2025-12-01 21:00:52,567 | INFO     | . stage-out = 2 s
[2025-12-01 16:01:31] 2025-12-01 21:00:52,567 | INFO     | . log creation = 0 s
[2025-12-01 16:01:31] 2025-12-01 21:00:52,568 | INFO     | ..............................
[2025-12-01 16:01:31] 2025-12-01 21:00:53,135 | INFO     | 
[2025-12-01 16:01:31] 2025-12-01 21:00:53,135 | INFO     | job summary report
[2025-12-01 16:01:31] 2025-12-01 21:00:53,135 | INFO     | --------------------------------------------------
[2025-12-01 16:01:31] 2025-12-01 21:00:53,136 | INFO     | PanDA job id: 6896912355
[2025-12-01 16:01:31] 2025-12-01 21:00:53,136 | INFO     | task id: 47538121
[2025-12-01 16:01:31] 2025-12-01 21:00:53,136 | INFO     | errors: (none)
[2025-12-01 16:01:31] 2025-12-01 21:00:53,136 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 16:01:31] 2025-12-01 21:00:53,136 | INFO     | pilot state: finished 
[2025-12-01 16:01:31] 2025-12-01 21:00:53,136 | INFO     | transexitcode: 0
[2025-12-01 16:01:31] 2025-12-01 21:00:53,137 | INFO     | exeerrorcode: 0
[2025-12-01 16:01:31] 2025-12-01 21:00:53,137 | INFO     | exeerrordiag: 
[2025-12-01 16:01:31] 2025-12-01 21:00:53,137 | INFO     | exitcode: 0
[2025-12-01 16:01:31] 2025-12-01 21:00:53,137 | INFO     | exitmsg: OK
[2025-12-01 16:01:31] 2025-12-01 21:00:53,137 | INFO     | cpuconsumptiontime: 257262 s
[2025-12-01 16:01:31] 2025-12-01 21:00:53,137 | INFO     | nevents: 1000
[2025-12-01 16:01:31] 2025-12-01 21:00:53,137 | INFO     | neventsw: 0
[2025-12-01 16:01:31] 2025-12-01 21:00:53,137 | INFO     | pid: 4953
[2025-12-01 16:01:31] 2025-12-01 21:00:53,137 | INFO     | pgrp: 4953
[2025-12-01 16:01:31] 2025-12-01 21:00:53,137 | INFO     | corecount: 12
[2025-12-01 16:01:31] 2025-12-01 21:00:53,138 | INFO     | event service: False
[2025-12-01 16:01:31] 2025-12-01 21:00:53,138 | INFO     | sizes: {0: 2284280, 1: 2284479, 6: 2284741, 11: 2284769, 22717: 2339328, 22720: 2348322, 22722: 2348506, 22727: 2348752}
[2025-12-01 16:01:31] 2025-12-01 21:00:53,138 | INFO     | --------------------------------------------------
[2025-12-01 16:01:31] 2025-12-01 21:00:53,138 | INFO     | 
[2025-12-01 16:01:31] 2025-12-01 21:00:53,138 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-01 16:01:31] 2025-12-01 21:00:53,161 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 16:01:31] 2025-12-01 21:00:53,162 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 16:01:31] 2025-12-01 21:00:53,162 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 16:01:31] 2025-12-01 21:00:53,162 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 16:01:31] 2025-12-01 21:00:53,162 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 16:01:31] 2025-12-01 21:00:53,162 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 16:01:31] 2025-12-01 21:00:53,163 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 16:01:31] 2025-12-01 21:00:53,163 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 16:01:31] 2025-12-01 21:00:53,163 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 16:01:31] 2025-12-01 21:00:53,163 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 16:01:31] 2025-12-01 21:00:53,163 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 16:01:31] 2025-12-01 21:00:53,163 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 16:01:31] 2025-12-01 21:00:53,164 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 16:01:31] 2025-12-01 21:00:53,164 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 16:01:31] 2025-12-01 21:00:53,164 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 16:01:31] 2025-12-01 21:00:53,164 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 16:01:31] 2025-12-01 21:00:53,164 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 16:01:31] 2025-12-01 21:00:53,164 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 16:01:31] 2025-12-01 21:00:53,165 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 16:01:31] 2025-12-01 21:00:53,165 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 16:01:31] 2025-12-01 21:00:53,165 | INFO     | job 6896912355 has completed (purged errors)
[2025-12-01 16:01:31] 2025-12-01 21:00:53,165 | INFO     | overall cleanup function is called
[2025-12-01 16:01:31] 2025-12-01 21:00:54,182 | INFO     | --- collectZombieJob: --- 10, [4953]
[2025-12-01 16:01:31] 2025-12-01 21:00:54,183 | INFO     | zombie collector waiting for pid 4953
[2025-12-01 16:01:31] 2025-12-01 21:00:54,183 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 16:01:31] 2025-12-01 21:00:54,183 | INFO     | collected zombie processes
[2025-12-01 16:01:31] 2025-12-01 21:00:54,183 | INFO     | will attempt to kill all subprocesses of pid=4953
[2025-12-01 16:01:31] 2025-12-01 21:00:54,274 | INFO     | process IDs to be killed: [4953] (in reverse order)
[2025-12-01 16:01:31] 2025-12-01 21:00:54,330 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 16:01:31] 2025-12-01 21:00:54,331 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 16:01:31] 2025-12-01 21:00:54,335 | INFO     | did not find any defunct processes belonging to 4953
[2025-12-01 16:01:31] 2025-12-01 21:00:54,338 | INFO     | did not find any defunct processes belonging to 4953
[2025-12-01 16:01:31] 2025-12-01 21:00:54,339 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 16:01:31] 2025-12-01 21:00:54,340 | INFO     | ready for new job
[2025-12-01 16:01:31] 2025-12-01 21:00:54,340 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 16:01:31] 2025-12-01 21:00:54,342 | INFO     | ***************************************
[2025-12-01 16:01:31] 2025-12-01 21:00:54,342 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 16:01:31] 2025-12-01 21:00:54,342 | INFO     | ***************************************
[2025-12-01 16:01:31] 2025-12-01 21:00:54,342 | INFO     | 
[2025-12-01 16:01:31] 2025-12-01 21:00:54,342 | INFO     | architecture information:
[2025-12-01 16:01:31] 2025-12-01 21:00:54,343 | INFO     | executing command: cat /etc/os-release
[2025-12-01 16:01:31] 2025-12-01 21:00:54,358 | INFO     | cat /etc/os-release:
[2025-12-01 16:01:31] NAME="CentOS Linux"
[2025-12-01 16:01:31] VERSION="7 (Core)"
[2025-12-01 16:01:31] ID="centos"
[2025-12-01 16:01:31] ID_LIKE="rhel fedora"
[2025-12-01 16:01:31] VERSION_ID="7"
[2025-12-01 16:01:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 16:01:31] ANSI_COLOR="0;31"
[2025-12-01 16:01:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 16:01:31] HOME_URL="https://www.centos.org/"
[2025-12-01 16:01:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 16:01:31] 
[2025-12-01 16:01:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 16:01:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 16:01:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 16:01:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 16:01:31] 
[2025-12-01 16:01:31] 2025-12-01 21:00:54,359 | INFO     | ***************************************
[2025-12-01 16:01:31] 2025-12-01 21:00:54,862 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-01 16:01:31] 2025-12-01 21:00:54,879 | INFO     | sufficient remaining disk space (28534898688 B)
[2025-12-01 16:01:31] 2025-12-01 21:00:54,879 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 16:01:31] 2025-12-01 21:00:54,880 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 16:01:31] 2025-12-01 21:00:54,880 | INFO     | update_server=False
[2025-12-01 16:01:31] 2025-12-01 21:00:54,880 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 16:01:31] 2025-12-01 21:00:54,900 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 16:01:31] 2025-12-01 21:00:54,900 | INFO     | aborting loop
[2025-12-01 16:01:31] 2025-12-01 21:00:55,123 | INFO     | all data control threads have been joined
[2025-12-01 16:01:31] 2025-12-01 21:00:55,885 | INFO     | [job] retrieve thread has finished
[2025-12-01 16:01:31] 2025-12-01 21:00:55,902 | INFO     | [data] copytool_in thread has finished
[2025-12-01 16:01:31] 2025-12-01 21:00:55,905 | INFO     | [job] job monitor thread has finished
[2025-12-01 16:01:31] 2025-12-01 21:00:56,119 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 16:01:31] 2025-12-01 21:00:56,129 | INFO     | [data] control thread has finished
[2025-12-01 16:01:31] 2025-12-01 21:00:56,224 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 16:01:31] 2025-12-01 21:00:56,266 | INFO     | all payload control threads have been joined
[2025-12-01 16:01:31] 2025-12-01 21:00:56,296 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 16:01:31] 2025-12-01 21:00:56,422 | INFO     | [payload] validate_post thread has finished
[2025-12-01 16:01:31] 2025-12-01 21:00:56,579 | INFO     | all job control threads have been joined
[2025-12-01 16:01:31] 2025-12-01 21:00:56,951 | INFO     | [payload] failed_post thread has finished
[2025-12-01 16:01:31] 2025-12-01 21:00:57,017 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 16:01:31] 2025-12-01 21:00:57,271 | INFO     | [payload] control thread has finished
[2025-12-01 16:01:31] 2025-12-01 21:00:57,296 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 16:01:31] 2025-12-01 21:00:57,310 | INFO     | [job] validate thread has finished
[2025-12-01 16:01:31] 2025-12-01 21:00:57,585 | INFO     | [job] control thread has finished
[2025-12-01 16:01:31] 2025-12-01 21:00:57,661 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 16:01:31] 2025-12-01 21:00:58,125 | INFO     | [data] copytool_out thread has finished
[2025-12-01 16:01:31] 2025-12-01 21:00:58,225 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 16:01:31] 2025-12-01 21:00:58,666 | INFO     | [job] queue monitor thread has finished
[2025-12-01 16:01:31] 2025-12-01 21:01:02,231 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 16:01:31] 2025-12-01 21:01:24,516 | INFO     | PID=30156 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 16:01:31] 2025-12-01 21:01:24,517 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 16:01:31] 2025-12-01 21:01:24,517 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 16:01:31] 2025-12-01 21:01:24,517 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 16:01:31] 2025-12-01 21:01:25,974 | INFO     | [monitor] cgroup control has ended
[2025-12-01 16:01:31] 2025-12-01 21:01:26,183 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140269580289856)>', '<ExcThread(monitor, started 140268867155712)>']
[2025-12-01 16:01:31] 2025-12-01 21:01:26,525 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 16:01:31] 2025-12-01 21:01:26,525 | INFO     | [monitor] control thread has ended
[2025-12-01 16:01:31] 2025-12-01 21:01:31,200 | INFO     | all workflow threads have been joined
[2025-12-01 16:01:31] 2025-12-01 21:01:31,200 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 16:01:31] 2025-12-01 21:01:31,200 | INFO     | traces error code: 0
[2025-12-01 16:01:31] 2025-12-01 21:01:31,201 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 16:01:31] 2025-12-01 21:01:31,289 [wrapper] ==== pilot stdout END ====
[2025-12-01 16:01:31] 2025-12-01 21:01:31,292 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 16:01:31] 2025-12-01 21:01:31,296 [wrapper] pilotpid: 30156
[2025-12-01 16:01:31] 2025-12-01 21:01:31,299 [wrapper] Pilot exit status: 0
[2025-12-01 16:01:31] 2025-12-01 21:01:31,314 [wrapper] pandaids: 6896912355
[2025-12-01 16:01:31] 2025-12-01 21:01:31,354 [wrapper] cleanup supervisor_pilot  5899 30157
[2025-12-01 16:01:31] 2025-12-01 21:01:31,358 [wrapper] Test setup, not cleaning
[2025-12-01 16:01:31] 2025-12-01 21:01:31,362 [wrapper] apfmon messages muted
[2025-12-01 16:01:31] 2025-12-01 21:01:31,366 [wrapper] ==== wrapper stdout END ====
[2025-12-01 16:01:31] 2025-12-01 21:01:31,370 [wrapper] ==== wrapper stderr END ====
[2025-12-01 16:01:31]  *** Error codes and diagnostics ***
[2025-12-01 16:01:31]     "exeErrorCode": 0,
[2025-12-01 16:01:31]     "exeErrorDiag": "",
[2025-12-01 16:01:31]     "pilotErrorCode": 0,
[2025-12-01 16:01:31]     "pilotErrorDiag": "",
[2025-12-01 16:01:31]  *** Listing of results directory ***
[2025-12-01 16:01:31] total 1062040
[2025-12-01 16:01:31] -rw-r--r-- 1 boincer umatlas    576529 Nov 28 05:28 pilot3.tar.gz
[2025-12-01 16:01:31] -rwx------ 1 boincer umatlas     36292 Nov 28 05:28 runpilot2-wrapper.sh
[2025-12-01 16:01:31] -rw-r--r-- 1 boincer umatlas      5112 Nov 28 05:32 queuedata.json
[2025-12-01 16:01:31] -rw-r--r-- 1 boincer umatlas       100 Dec  1 09:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 16:01:31] -rwxr-xr-x 1 boincer umatlas      7986 Dec  1 09:41 run_atlas
[2025-12-01 16:01:31] -rw-r--r-- 1 boincer umatlas       105 Dec  1 09:41 job.xml
[2025-12-01 16:01:31] -rw-r--r-- 2 boincer umatlas 378709772 Dec  1 09:41 EVNT.47528880._000014.pool.root.1
[2025-12-01 16:01:31] drwxrwx--x 2 boincer umatlas      4096 Dec  1 09:41 shared
[2025-12-01 16:01:31] -rw-r--r-- 2 boincer umatlas    590123 Dec  1 09:41 input.tar.gz
[2025-12-01 16:01:31] -rw-r--r-- 2 boincer umatlas     15847 Dec  1 09:41 start_atlas.sh
[2025-12-01 16:01:31] -rw-r--r-- 1 boincer umatlas         0 Dec  1 09:41 boinc_lockfile
[2025-12-01 16:01:31] -rw-r--r-- 1 boincer umatlas      2880 Dec  1 09:41 pandaJob.out
[2025-12-01 16:01:31] -rw------- 1 boincer umatlas        57 Dec  1 09:41 setup.sh.local
[2025-12-01 16:01:31] -rw------- 1 boincer umatlas    992150 Dec  1 09:41 agis_schedconf.cvmfs.json
[2025-12-01 16:01:31] drwx------ 5 boincer umatlas      4096 Dec  1 09:41 pilot3
[2025-12-01 16:01:31] -rw-r--r-- 1 boincer umatlas       532 Dec  1 15:50 boinc_task_state.xml
[2025-12-01 16:01:31] -rw------- 1 boincer umatlas 694048343 Dec  1 16:00 HITS.47538121._000135.pool.root.1
[2025-12-01 16:01:31] -rw-r--r-- 1 boincer umatlas      5956 Dec  1 16:00 init_data.xml
[2025-12-01 16:01:31] -rw------- 1 boincer umatlas      1060 Dec  1 16:00 memory_monitor_summary.json
[2025-12-01 16:01:31] -rw------- 1 boincer umatlas   1516240 Dec  1 16:00 agis_ddmendpoints.agis.ALL.json
[2025-12-01 16:01:31] -rw------- 1 boincer umatlas   2217742 Dec  1 16:00 log.47538121._000135.job.log.tgz.1
[2025-12-01 16:01:31] -rw------- 1 boincer umatlas     27668 Dec  1 16:00 heartbeat.json
[2025-12-01 16:01:31] -rw-r--r-- 1 boincer umatlas      8192 Dec  1 16:01 boinc_mmap_file
[2025-12-01 16:01:31] -rw-r--r-- 1 boincer umatlas        29 Dec  1 16:01 wrapper_checkpoint.txt
[2025-12-01 16:01:31] -rw------- 1 boincer umatlas        95 Dec  1 16:01 pilot_heartbeat.json
[2025-12-01 16:01:31] -rw------- 1 boincer umatlas      4746 Dec  1 16:01 pilotlog.txt
[2025-12-01 16:01:31] -rw------- 1 boincer umatlas   3189216 Dec  1 16:01 log.47538121._000135.job.log.1
[2025-12-01 16:01:31] -rw------- 1 boincer umatlas       353 Dec  1 16:01 output.list
[2025-12-01 16:01:31] -rw-r--r-- 1 boincer umatlas       620 Dec  1 16:01 runtime_log
[2025-12-01 16:01:31] -rw------- 1 boincer umatlas   5447680 Dec  1 16:01 result.tar.gz
[2025-12-01 16:01:31] -rw-r--r-- 1 boincer umatlas      9345 Dec  1 16:01 runtime_log.err
[2025-12-01 16:01:31] -rw------- 1 boincer umatlas       670 Dec  1 16:01 fjhMDmttAj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRWOKDmvr9smm.diag
[2025-12-01 16:01:31] -rw-r--r-- 1 boincer umatlas     21313 Dec  1 16:01 stderr.txt
[2025-12-01 16:01:31] HITS file was successfully produced:
[2025-12-01 16:01:31] -rw------- 1 boincer umatlas 694048343 Dec  1 16:00 shared/HITS.pool.root.1
[2025-12-01 16:01:31]  *** Contents of shared directory: ***
[2025-12-01 16:01:31] total 1053540
[2025-12-01 16:01:31] -rw-r--r-- 2 boincer umatlas 378709772 Dec  1 09:41 ATLAS.root_0
[2025-12-01 16:01:31] -rw-r--r-- 2 boincer umatlas    590123 Dec  1 09:41 input.tar.gz
[2025-12-01 16:01:31] -rw-r--r-- 2 boincer umatlas     15847 Dec  1 09:41 start_atlas.sh
[2025-12-01 16:01:31] -rw------- 1 boincer umatlas 694048343 Dec  1 16:00 HITS.pool.root.1
[2025-12-01 16:01:31] -rw------- 1 boincer umatlas   5447680 Dec  1 16:01 result.tar.gz
16:01:32 (26473): run_atlas exited; CPU time 249462.069336
16:01:32 (26473): called boinc_finish(0)

</stderr_txt>
]]>

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