Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:44:57 (1163531): wrapper (7.7.26015): starting
16:44:57 (1163531): wrapper: running run_atlas (--nthreads 12)
[2025-12-01 16:44:57] Arguments: --nthreads 12
[2025-12-01 16:44:57] Threads: 12
[2025-12-01 16:44:57] Checking for CVMFS
[2025-12-01 16:44:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 16:44:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 16:44:57] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 16:44:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 16:44:58] 2.13.3.0 9777 14454 109972 153522 0 105 3128239 4097025 1037 130560 0 10994034 99.926 1266039 1611 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-12-01 16:44:58] CVMFS is ok
[2025-12-01 16:44:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 16:44:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 16:44:58] Further information can be found at the LHC@home message board.
[2025-12-01 16:44:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 16:44:58] Checking for apptainer binary...
[2025-12-01 16:44:58] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-12-01 16:44:58] apptainer is not installed, using version from CVMFS
[2025-12-01 16:44:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 16:44:58] pckelar6.cern.ch
[2025-12-01 16:44:58] apptainer works
[2025-12-01 16:44:58] Set ATHENA_PROC_NUMBER=12
[2025-12-01 16:44:58] Set ATHENA_CORE_NUMBER=12
[2025-12-01 16:44:58] Starting ATLAS job with PandaID=6901249278
[2025-12-01 16:44:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-02 03:06:22]  *** The last 200 lines of the pilot log: ***
[2025-12-02 03:06:22] 2025-12-02 02:05:20,141 | INFO     | .. there are 2 such processes running
[2025-12-02 03:06:22] 2025-12-02 02:05:20,180 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-02 03:06:22] 2025-12-02 02:05:20,188 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2808.259125
[2025-12-02 03:06:22] 2025-12-02 02:05:20,194 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6901249278/memory_monitor_summary.json (trf name=prmon)
[2025-12-02 03:06:22] 2025-12-02 02:05:20,195 | INFO     | extracted standard info from prmon json
[2025-12-02 03:06:22] 2025-12-02 02:05:20,196 | INFO     | extracted standard memory fields from prmon json
[2025-12-02 03:06:22] 2025-12-02 02:05:20,196 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-02 03:06:22] 2025-12-02 02:05:20,212 | INFO     | fitting pss+swap vs Time
[2025-12-02 03:06:22] 2025-12-02 02:05:20,213 | INFO     | sum of square deviations: 70382560350.08037
[2025-12-02 03:06:22] 2025-12-02 02:05:20,225 | INFO     | sum of deviations: 1101764606718.8638
[2025-12-02 03:06:22] 2025-12-02 02:05:20,225 | INFO     | mean x: 1764622531.4737704
[2025-12-02 03:06:22] 2025-12-02 02:05:20,225 | INFO     | mean y: 4115871.5852459017
[2025-12-02 03:06:22] 2025-12-02 02:05:20,226 | INFO     | intersect: -27619185124.088524
[2025-12-02 03:06:22] 2025-12-02 02:05:20,227 | INFO     | chi2: 7.041879772432756
[2025-12-02 03:06:22] 2025-12-02 02:05:20,228 | INFO     | sum of square deviations: 68666160492.80016
[2025-12-02 03:06:22] 2025-12-02 02:05:20,239 | INFO     | sum of deviations: 1432798118002.1812
[2025-12-02 03:06:22] 2025-12-02 02:05:20,240 | INFO     | mean x: 1764622378.9818182
[2025-12-02 03:06:22] 2025-12-02 02:05:20,240 | INFO     | mean y: 4145278.9256198346
[2025-12-02 03:06:22] 2025-12-02 02:05:20,240 | INFO     | intersect: -36816722604.823105
[2025-12-02 03:06:22] 2025-12-02 02:05:20,241 | INFO     | chi2: 3.0893091550430865
[2025-12-02 03:06:22] 2025-12-02 02:05:20,241 | INFO     | current chi2=3.0893091550430865 (change=56.12948168844093 %)
[2025-12-02 03:06:22] 2025-12-02 02:05:20,242 | INFO     | sum of square deviations: 66977864037.91848
[2025-12-02 03:06:22] 2025-12-02 02:05:20,254 | INFO     | sum of deviations: 1529413425525.604
[2025-12-02 03:06:22] 2025-12-02 02:05:20,254 | INFO     | mean x: 1764622226.4883332
[2025-12-02 03:06:22] 2025-12-02 02:05:20,255 | INFO     | mean y: 4153989.015
[2025-12-02 03:06:22] 2025-12-02 02:05:20,255 | INFO     | intersect: -40290306918.908775
[2025-12-02 03:06:22] 2025-12-02 02:05:20,256 | INFO     | chi2: 2.5409518486220546
[2025-12-02 03:06:22] 2025-12-02 02:05:20,256 | INFO     | current chi2=2.5409518486220546 (change=17.750159627950346 %)
[2025-12-02 03:06:22] 2025-12-02 02:05:20,256 | INFO     | right removable region: 599
[2025-12-02 03:06:22] 2025-12-02 02:05:20,258 | INFO     | sum of square deviations: 68665835119.762085
[2025-12-02 03:06:22] 2025-12-02 02:05:20,270 | INFO     | sum of deviations: 854824210956.2164
[2025-12-02 03:06:22] 2025-12-02 02:05:20,270 | INFO     | mean x: 1764622683.9801652
[2025-12-02 03:06:22] 2025-12-02 02:05:20,270 | INFO     | mean y: 4137767.018181818
[2025-12-02 03:06:22] 2025-12-02 02:05:20,270 | INFO     | intersect: -21963733021.094536
[2025-12-02 03:06:22] 2025-12-02 02:05:20,272 | INFO     | chi2: 4.7430005049618185
[2025-12-02 03:06:22] 2025-12-02 02:05:20,272 | INFO     | current chi2=4.7430005049618185 (change=32.645818187218836 %)
[2025-12-02 03:06:22] 2025-12-02 02:05:20,273 | INFO     | sum of square deviations: 66977397819.75977
[2025-12-02 03:06:22] 2025-12-02 02:05:20,285 | INFO     | sum of deviations: 785980395180.8398
[2025-12-02 03:06:22] 2025-12-02 02:05:20,285 | INFO     | mean x: 1764622836.48
[2025-12-02 03:06:22] 2025-12-02 02:05:20,285 | INFO     | mean y: 4143984.6533333333
[2025-12-02 03:06:22] 2025-12-02 02:05:20,286 | INFO     | intersect: -20703721646.287952
[2025-12-02 03:06:22] 2025-12-02 02:05:20,287 | INFO     | chi2: 4.671536557130246
[2025-12-02 03:06:22] 2025-12-02 02:05:20,287 | INFO     | current chi2=4.671536557130246 (change=1.5067244407166287 %)
[2025-12-02 03:06:22] 2025-12-02 02:05:20,287 | INFO     | left removable region: 20
[2025-12-02 03:06:22] 2025-12-02 02:05:20,289 | INFO     | sum of square deviations: 60188346445.99308
[2025-12-02 03:06:22] 2025-12-02 02:05:20,299 | INFO     | sum of deviations: 1116509847854.054
[2025-12-02 03:06:22] 2025-12-02 02:05:20,300 | INFO     | mean x: 1764622805.9965458
[2025-12-02 03:06:22] 2025-12-02 02:05:20,300 | INFO     | mean y: 4193565.5267702937
[2025-12-02 03:06:22] 2025-12-02 02:05:20,300 | INFO     | intersect: -32730029203.175995
[2025-12-02 03:06:22] 2025-12-02 02:05:20,301 | INFO     | chi2: 0.06534339597753953
[2025-12-02 03:06:22] 2025-12-02 02:05:20,302 | INFO     | current memory leak: 18.55 B/s (using 579 data points, chi2=0.07)
[2025-12-02 03:06:22] 2025-12-02 02:05:20,303 | INFO     | could have reported an average CPU frequency of 2800 MHz (23 samples)
[2025-12-02 03:06:22] 2025-12-02 02:05:20,304 | INFO     | ..............................
[2025-12-02 03:06:22] 2025-12-02 02:05:20,304 | INFO     | . Timing measurements:
[2025-12-02 03:06:22] 2025-12-02 02:05:20,304 | INFO     | . get job = 0 s
[2025-12-02 03:06:22] 2025-12-02 02:05:20,304 | INFO     | . initial setup = 2 s
[2025-12-02 03:06:22] 2025-12-02 02:05:20,305 | INFO     | . payload setup = 18 s
[2025-12-02 03:06:22] 2025-12-02 02:05:20,305 | INFO     | . stage-in = 0 s
[2025-12-02 03:06:22] 2025-12-02 02:05:20,305 | INFO     | . payload execution = 37156 s
[2025-12-02 03:06:22] 2025-12-02 02:05:20,305 | INFO     | . stage-out = 2 s
[2025-12-02 03:06:22] 2025-12-02 02:05:20,305 | INFO     | . log creation = 0 s
[2025-12-02 03:06:22] 2025-12-02 02:05:20,305 | INFO     | ..............................
[2025-12-02 03:06:22] 2025-12-02 02:05:20,452 | INFO     | 
[2025-12-02 03:06:22] 2025-12-02 02:05:20,452 | INFO     | job summary report
[2025-12-02 03:06:22] 2025-12-02 02:05:20,452 | INFO     | --------------------------------------------------
[2025-12-02 03:06:22] 2025-12-02 02:05:20,453 | INFO     | PanDA job id: 6901249278
[2025-12-02 03:06:22] 2025-12-02 02:05:20,453 | INFO     | task id: 47531111
[2025-12-02 03:06:22] 2025-12-02 02:05:20,453 | INFO     | errors: (none)
[2025-12-02 03:06:22] 2025-12-02 02:05:20,453 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-02 03:06:22] 2025-12-02 02:05:20,453 | INFO     | pilot state: finished 
[2025-12-02 03:06:22] 2025-12-02 02:05:20,453 | INFO     | transexitcode: 0
[2025-12-02 03:06:22] 2025-12-02 02:05:20,454 | INFO     | exeerrorcode: 0
[2025-12-02 03:06:22] 2025-12-02 02:05:20,454 | INFO     | exeerrordiag: 
[2025-12-02 03:06:22] 2025-12-02 02:05:20,454 | INFO     | exitcode: 0
[2025-12-02 03:06:22] 2025-12-02 02:05:20,454 | INFO     | exitmsg: OK
[2025-12-02 03:06:22] 2025-12-02 02:05:20,454 | INFO     | cpuconsumptiontime: 426099 s
[2025-12-02 03:06:22] 2025-12-02 02:05:20,454 | INFO     | nevents: 1000
[2025-12-02 03:06:22] 2025-12-02 02:05:20,454 | INFO     | neventsw: 0
[2025-12-02 03:06:22] 2025-12-02 02:05:20,455 | INFO     | pid: 1175478
[2025-12-02 03:06:22] 2025-12-02 02:05:20,455 | INFO     | pgrp: 1175478
[2025-12-02 03:06:22] 2025-12-02 02:05:20,455 | INFO     | corecount: 12
[2025-12-02 03:06:22] 2025-12-02 02:05:20,455 | INFO     | event service: False
[2025-12-02 03:06:22] 2025-12-02 02:05:20,455 | INFO     | sizes: {0: 2284336, 1: 2284478, 8: 2284740, 12: 2284768, 37179: 2345504, 37181: 2354498, 37183: 2354682, 37189: 2354928}
[2025-12-02 03:06:22] 2025-12-02 02:05:20,455 | INFO     | --------------------------------------------------
[2025-12-02 03:06:22] 2025-12-02 02:05:20,456 | INFO     | 
[2025-12-02 03:06:22] 2025-12-02 02:05:20,456 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-12-02 03:06:22] 2025-12-02 02:05:20,482 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-02 03:06:22] 2025-12-02 02:05:20,482 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-02 03:06:22] 2025-12-02 02:05:20,482 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-02 03:06:22] 2025-12-02 02:05:20,483 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-02 03:06:22] 2025-12-02 02:05:20,483 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-02 03:06:22] 2025-12-02 02:05:20,483 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-02 03:06:22] 2025-12-02 02:05:20,483 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-02 03:06:22] 2025-12-02 02:05:20,484 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-02 03:06:22] 2025-12-02 02:05:20,484 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-02 03:06:22] 2025-12-02 02:05:20,484 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-02 03:06:22] 2025-12-02 02:05:20,484 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-02 03:06:22] 2025-12-02 02:05:20,484 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-02 03:06:22] 2025-12-02 02:05:20,484 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-02 03:06:22] 2025-12-02 02:05:20,485 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-02 03:06:22] 2025-12-02 02:05:20,485 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-02 03:06:22] 2025-12-02 02:05:20,485 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-02 03:06:22] 2025-12-02 02:05:20,485 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-02 03:06:22] 2025-12-02 02:05:20,485 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-02 03:06:22] 2025-12-02 02:05:20,485 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-02 03:06:22] 2025-12-02 02:05:20,486 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-02 03:06:22] 2025-12-02 02:05:20,486 | INFO     | job 6901249278 has completed (purged errors)
[2025-12-02 03:06:22] 2025-12-02 02:05:20,486 | INFO     | overall cleanup function is called
[2025-12-02 03:06:22] 2025-12-02 02:05:21,518 | INFO     | --- collectZombieJob: --- 10, [1175478]
[2025-12-02 03:06:22] 2025-12-02 02:05:21,518 | INFO     | zombie collector waiting for pid 1175478
[2025-12-02 03:06:22] 2025-12-02 02:05:21,518 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-02 03:06:22] 2025-12-02 02:05:21,519 | INFO     | collected zombie processes
[2025-12-02 03:06:22] 2025-12-02 02:05:21,519 | INFO     | will attempt to kill all subprocesses of pid=1175478
[2025-12-02 03:06:22] 2025-12-02 02:05:21,750 | INFO     | process IDs to be killed: [1175478] (in reverse order)
[2025-12-02 03:06:22] 2025-12-02 02:05:21,820 | WARNING  | found no corresponding commands to process id(s)
[2025-12-02 03:06:22] 2025-12-02 02:05:21,820 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-02 03:06:22] 2025-12-02 02:05:21,827 | INFO     | did not find any defunct processes belonging to 1175478
[2025-12-02 03:06:22] 2025-12-02 02:05:21,834 | INFO     | did not find any defunct processes belonging to 1175478
[2025-12-02 03:06:22] 2025-12-02 02:05:21,835 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-02 03:06:22] 2025-12-02 02:05:21,836 | INFO     | ready for new job
[2025-12-02 03:06:22] 2025-12-02 02:05:21,836 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-02 03:06:22] 2025-12-02 02:05:21,838 | INFO     | ***************************************
[2025-12-02 03:06:22] 2025-12-02 02:05:21,839 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-02 03:06:22] 2025-12-02 02:05:21,839 | INFO     | ***************************************
[2025-12-02 03:06:22] 2025-12-02 02:05:21,839 | INFO     | 
[2025-12-02 03:06:22] 2025-12-02 02:05:21,840 | INFO     | architecture information:
[2025-12-02 03:06:22] 2025-12-02 02:05:21,841 | INFO     | executing command: cat /etc/os-release
[2025-12-02 03:06:22] 2025-12-02 02:05:21,859 | INFO     | cat /etc/os-release:
[2025-12-02 03:06:22] NAME="CentOS Linux"
[2025-12-02 03:06:22] VERSION="7 (Core)"
[2025-12-02 03:06:22] ID="centos"
[2025-12-02 03:06:22] ID_LIKE="rhel fedora"
[2025-12-02 03:06:22] VERSION_ID="7"
[2025-12-02 03:06:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-02 03:06:22] ANSI_COLOR="0;31"
[2025-12-02 03:06:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-02 03:06:22] HOME_URL="https://www.centos.org/"
[2025-12-02 03:06:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-02 03:06:22] 
[2025-12-02 03:06:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-02 03:06:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-02 03:06:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-02 03:06:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-02 03:06:22] 
[2025-12-02 03:06:22] 2025-12-02 02:05:21,860 | INFO     | ***************************************
[2025-12-02 03:06:22] 2025-12-02 02:05:22,363 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-12-02 03:06:22] 2025-12-02 02:05:22,387 | INFO     | sufficient remaining disk space (867117826048 B)
[2025-12-02 03:06:22] 2025-12-02 02:05:22,387 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-02 03:06:22] 2025-12-02 02:05:22,387 | INFO     | current server update state: UPDATING_FINAL
[2025-12-02 03:06:22] 2025-12-02 02:05:22,388 | INFO     | update_server=False
[2025-12-02 03:06:22] 2025-12-02 02:05:22,388 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-02 03:06:22] 2025-12-02 02:05:22,388 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-02 03:06:22] 2025-12-02 02:05:22,430 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-02 03:06:22] 2025-12-02 02:05:22,430 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-02 03:06:22] 2025-12-02 02:05:22,430 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-02 03:06:22] 2025-12-02 02:05:22,430 | INFO     | will abort loop
[2025-12-02 03:06:22] 2025-12-02 02:05:22,909 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-02 03:06:22] 2025-12-02 02:05:22,933 | INFO     | all job control threads have been joined
[2025-12-02 03:06:22] 2025-12-02 02:05:23,324 | INFO     | all payload control threads have been joined
[2025-12-02 03:06:22] 2025-12-02 02:05:23,365 | INFO     | all data control threads have been joined
[2025-12-02 03:06:22] 2025-12-02 02:05:23,393 | INFO     | [job] retrieve thread has finished
[2025-12-02 03:06:22] 2025-12-02 02:05:23,393 | INFO     | [job] queue monitor thread has finished
[2025-12-02 03:06:22] 2025-12-02 02:05:23,436 | INFO     | [job] job monitor thread has finished
[2025-12-02 03:06:22] 2025-12-02 02:05:23,486 | INFO     | [data] copytool_in thread has finished
[2025-12-02 03:06:22] 2025-12-02 02:05:23,560 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-02 03:06:22] 2025-12-02 02:05:23,771 | INFO     | [payload] validate_post thread has finished
[2025-12-02 03:06:22] 2025-12-02 02:05:23,939 | INFO     | [job] control thread has finished
[2025-12-02 03:06:22] 2025-12-02 02:05:24,120 | INFO     | [payload] failed_post thread has finished
[2025-12-02 03:06:22] 2025-12-02 02:05:24,232 | INFO     | [job] validate thread has finished
[2025-12-02 03:06:22] 2025-12-02 02:05:24,329 | INFO     | [payload] control thread has finished
[2025-12-02 03:06:22] 2025-12-02 02:05:24,333 | INFO     | [payload] execute_payloads thread has finished
[2025-12-02 03:06:22] 2025-12-02 02:05:24,371 | INFO     | [data] control thread has finished
[2025-12-02 03:06:22] 2025-12-02 02:05:24,484 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-02 03:06:22] 2025-12-02 02:05:24,577 | INFO     | [payload] validate_pre thread has finished
[2025-12-02 03:06:22] 2025-12-02 02:05:24,698 | INFO     | [job] create_data_payload thread has finished
[2025-12-02 03:06:22] 2025-12-02 02:05:24,914 | INFO     | [data] copytool_out thread has finished
[2025-12-02 03:06:22] 2025-12-02 02:05:28,490 | INFO     | [data] queue_monitor thread has finished
[2025-12-02 03:06:22] 2025-12-02 02:05:52,562 | INFO     | PID=1167351 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-02 03:06:22] 2025-12-02 02:05:52,562 | INFO     | .. there are 2 such processes running
[2025-12-02 03:06:22] 2025-12-02 02:05:52,563 | INFO     | found 0 job(s) in 20 queues
[2025-12-02 03:06:22] 2025-12-02 02:05:52,563 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-02 03:06:22] 2025-12-02 02:05:52,563 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-02 03:06:22] 2025-12-02 02:06:15,015 | INFO     | [monitor] cgroup control has ended
[2025-12-02 03:06:22] 2025-12-02 02:06:16,965 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140436963399488)>', '<ExcThread(monitor, started 140436278593280)>']
[2025-12-02 03:06:22] 2025-12-02 02:06:17,685 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-02 03:06:22] 2025-12-02 02:06:17,685 | INFO     | [monitor] control thread has ended
[2025-12-02 03:06:22] 2025-12-02 02:06:21,990 | INFO     | all workflow threads have been joined
[2025-12-02 03:06:22] 2025-12-02 02:06:21,990 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-02 03:06:22] 2025-12-02 02:06:21,991 | INFO     | traces error code: 0
[2025-12-02 03:06:22] 2025-12-02 02:06:21,991 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-02 03:06:22] 2025-12-02 02:06:22,191 [wrapper] ==== pilot stdout END ====
[2025-12-02 03:06:22] 2025-12-02 02:06:22,195 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-02 03:06:22] 2025-12-02 02:06:22,200 [wrapper] pilotpid: 1167351
[2025-12-02 03:06:22] 2025-12-02 02:06:22,204 [wrapper] Pilot exit status: 0
[2025-12-02 03:06:22] 2025-12-02 02:06:22,218 [wrapper] pandaids: 6901249278
[2025-12-02 03:06:22] 2025-12-02 02:06:22,262 [wrapper] cleanup supervisor_pilot 1401410 1167352
[2025-12-02 03:06:22] 2025-12-02 02:06:22,266 [wrapper] Test setup, not cleaning
[2025-12-02 03:06:22] 2025-12-02 02:06:22,270 [wrapper] apfmon messages muted
[2025-12-02 03:06:22] 2025-12-02 02:06:22,274 [wrapper] ==== wrapper stdout END ====
[2025-12-02 03:06:22] 2025-12-02 02:06:22,278 [wrapper] ==== wrapper stderr END ====
[2025-12-02 03:06:22]  *** Error codes and diagnostics ***
[2025-12-02 03:06:22]     "exeErrorCode": 0,
[2025-12-02 03:06:22]     "exeErrorDiag": "",
[2025-12-02 03:06:22]     "pilotErrorCode": 0,
[2025-12-02 03:06:22]     "pilotErrorDiag": "",
[2025-12-02 03:06:22]  *** Listing of results directory ***
[2025-12-02 03:06:22] total 1063340
[2025-12-02 03:06:22] -rw-r--r--. 1 boinc boinc    576529 Nov 29 10:19 pilot3.tar.gz
[2025-12-02 03:06:22] -rwx------. 1 boinc boinc     36292 Nov 29 10:22 runpilot2-wrapper.sh
[2025-12-02 03:06:22] -rw-r--r--. 1 boinc boinc      5112 Nov 29 10:26 queuedata.json
[2025-12-02 03:06:22] -rw-r--r--. 1 boinc boinc       100 Dec  1 16:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-02 03:06:22] -rwxr-xr-x. 1 boinc boinc      7986 Dec  1 16:44 run_atlas
[2025-12-02 03:06:22] -rw-r--r--. 1 boinc boinc       105 Dec  1 16:44 job.xml
[2025-12-02 03:06:22] -rw-r--r--. 1 boinc boinc      6293 Dec  1 16:44 init_data.xml
[2025-12-02 03:06:22] -rw-r--r--. 2 boinc boinc 377708794 Dec  1 16:44 EVNT.47531104._000077.pool.root.1
[2025-12-02 03:06:22] -rw-r--r--. 2 boinc boinc     15847 Dec  1 16:44 start_atlas.sh
[2025-12-02 03:06:22] drwxrwx--x. 2 boinc boinc        68 Dec  1 16:44 shared
[2025-12-02 03:06:22] -rw-r--r--. 2 boinc boinc    590124 Dec  1 16:44 input.tar.gz
[2025-12-02 03:06:22] -rw-r--r--. 1 boinc boinc         0 Dec  1 16:44 boinc_lockfile
[2025-12-02 03:06:22] -rw-r--r--. 1 boinc boinc      2879 Dec  1 16:44 pandaJob.out
[2025-12-02 03:06:22] -rw-------. 1 boinc boinc    992142 Dec  1 16:45 agis_schedconf.cvmfs.json
[2025-12-02 03:06:22] drwx------. 5 boinc boinc      4096 Dec  1 16:45 pilot3
[2025-12-02 03:06:22] -rw-r--r--. 1 boinc boinc       533 Dec  2 02:52 boinc_task_state.xml
[2025-12-02 03:06:22] -rw-------. 1 boinc boinc 692045561 Dec  2 03:04 HITS.47531111._000755.pool.root.1
[2025-12-02 03:06:22] -rw-------. 1 boinc boinc      1034 Dec  2 03:05 memory_monitor_summary.json
[2025-12-02 03:06:22] -rw-------. 1 boinc boinc   1516240 Dec  2 03:05 agis_ddmendpoints.agis.ALL.json
[2025-12-02 03:06:22] -rw-------. 1 boinc boinc        95 Dec  2 03:05 pilot_heartbeat.json
[2025-12-02 03:06:22] -rw-------. 1 boinc boinc   2424373 Dec  2 03:05 log.47531111._000755.job.log.tgz.1
[2025-12-02 03:06:22] -rw-------. 1 boinc boinc     27979 Dec  2 03:05 heartbeat.json
[2025-12-02 03:06:22] -rw-r--r--. 1 boinc boinc        29 Dec  2 03:05 wrapper_checkpoint.txt
[2025-12-02 03:06:22] -rw-r--r--. 1 boinc boinc      8192 Dec  2 03:05 boinc_mmap_file
[2025-12-02 03:06:22] -rw-------. 1 boinc boinc      5010 Dec  2 03:06 pilotlog.txt
[2025-12-02 03:06:22] -rw-------. 1 boinc boinc   5156904 Dec  2 03:06 log.47531111._000755.job.log.1
[2025-12-02 03:06:22] -rw-------. 1 boinc boinc       353 Dec  2 03:06 output.list
[2025-12-02 03:06:22] -rw-r--r--. 1 boinc boinc       620 Dec  2 03:06 runtime_log
[2025-12-02 03:06:22] -rw-------. 1 boinc boinc   7618560 Dec  2 03:06 result.tar.gz
[2025-12-02 03:06:22] -rw-r--r--. 1 boinc boinc      8842 Dec  2 03:06 runtime_log.err
[2025-12-02 03:06:22] -rw-------. 1 boinc boinc       665 Dec  2 03:06 JvBMDmPLWj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmotLKDmWhcIkm.diag
[2025-12-02 03:06:22] -rw-r--r--. 1 boinc boinc     21379 Dec  2 03:06 stderr.txt
[2025-12-02 03:06:22] HITS file was successfully produced:
[2025-12-02 03:06:22] -rw-------. 1 boinc boinc 692045561 Dec  2 03:04 shared/HITS.pool.root.1
[2025-12-02 03:06:22]  *** Contents of shared directory: ***
[2025-12-02 03:06:22] total 1052724
[2025-12-02 03:06:22] -rw-r--r--. 2 boinc boinc 377708794 Dec  1 16:44 ATLAS.root_0
[2025-12-02 03:06:22] -rw-r--r--. 2 boinc boinc     15847 Dec  1 16:44 start_atlas.sh
[2025-12-02 03:06:22] -rw-r--r--. 2 boinc boinc    590124 Dec  1 16:44 input.tar.gz
[2025-12-02 03:06:22] -rw-------. 1 boinc boinc 692045561 Dec  2 03:04 HITS.pool.root.1
[2025-12-02 03:06:22] -rw-------. 1 boinc boinc   7618560 Dec  2 03:06 result.tar.gz
03:06:24 (1163531): run_atlas exited; CPU time 426356.457397
03:06:24 (1163531): called boinc_finish(0)

</stderr_txt>
]]>

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