Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
15:53:09 (4046508): wrapper (7.7.26015): starting
15:53:09 (4046508): wrapper: running run_atlas (--nthreads 12)
[2025-12-01 15:53:09] Arguments: --nthreads 12
[2025-12-01 15:53:09] Threads: 12
[2025-12-01 15:53:09] Checking for CVMFS
[2025-12-01 15:53:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 15:53:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 15:53:09] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 15:53:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 15:53:09] 2.13.0.0 498242 18102 45864 153522 2 81 74374527 82903040 1302 130560 29 8621325 99.967 791373 328 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-12-01 15:53:09] CVMFS is ok
[2025-12-01 15:53:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 15:53:09] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-01 15:53:09] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-01 15:53:09] Further information can be found at the LHC@home message board.
[2025-12-01 15:53:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 15:53:09] Checking for apptainer binary...
[2025-12-01 15:53:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 15:53:09] Running /usr/bin/apptainer --version
[2025-12-01 15:53:09] apptainer version 1.4.4
[2025-12-01 15:53:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 15:53:09] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) torr
[2025-12-01 15:53:09] apptainer works
[2025-12-01 15:53:09] Set ATHENA_PROC_NUMBER=12
[2025-12-01 15:53:09] Set ATHENA_CORE_NUMBER=12
[2025-12-01 15:53:09] Starting ATLAS job with PandaID=6901249244
[2025-12-01 15:53:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 18:57:36]  *** The last 200 lines of the pilot log: ***
[2025-12-01 18:57:36] 2025-12-01 18:56:50,876 | INFO     | total number of processed events: 1000 (read)
[2025-12-01 18:57:36] 2025-12-01 18:56:50,876 | INFO     | executing command: lscpu
[2025-12-01 18:57:36] 2025-12-01 18:56:50,883 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-01 18:57:36] 2025-12-01 18:56:51,117 | INFO     | time since job start (11018s) is within the limit (172800.0s)
[2025-12-01 18:57:36] 2025-12-01 18:56:51,954 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 18:57:36] 2025-12-01 18:56:51,955 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3121.343333333333
[2025-12-01 18:57:36] 2025-12-01 18:56:51,956 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6901249244/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 18:57:36] 2025-12-01 18:56:51,956 | INFO     | extracted standard info from prmon json
[2025-12-01 18:57:36] 2025-12-01 18:56:51,956 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 18:57:36] 2025-12-01 18:56:51,956 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 18:57:36] 2025-12-01 18:56:51,957 | INFO     | fitting pss+swap vs Time
[2025-12-01 18:57:36] 2025-12-01 18:56:51,957 | INFO     | sum of square deviations: 1838622005.5469556
[2025-12-01 18:57:36] 2025-12-01 18:56:51,957 | INFO     | sum of deviations: 79600955088.69064
[2025-12-01 18:57:36] 2025-12-01 18:56:51,957 | INFO     | mean x: 1764609899.1381216
[2025-12-01 18:57:36] 2025-12-01 18:56:51,958 | INFO     | mean y: 4046425.9723756905
[2025-12-01 18:57:36] 2025-12-01 18:56:51,958 | INFO     | intersect: -76392642456.56221
[2025-12-01 18:57:36] 2025-12-01 18:56:51,958 | INFO     | chi2: 3.450786420804341
[2025-12-01 18:57:36] 2025-12-01 18:56:51,958 | INFO     | sum of square deviations: 1690422200.4488585
[2025-12-01 18:57:36] 2025-12-01 18:56:51,958 | INFO     | sum of deviations: 133053011508.52841
[2025-12-01 18:57:36] 2025-12-01 18:56:51,958 | INFO     | mean x: 1764609746.6420455
[2025-12-01 18:57:36] 2025-12-01 18:56:51,958 | INFO     | mean y: 4100900.1988636362
[2025-12-01 18:57:36] 2025-12-01 18:56:51,958 | INFO     | intersect: -138888207107.6364
[2025-12-01 18:57:36] 2025-12-01 18:56:51,958 | INFO     | chi2: 1.66002142432313
[2025-12-01 18:57:36] 2025-12-01 18:56:51,958 | INFO     | current chi2=1.66002142432313 (change=51.894402553717114 %)
[2025-12-01 18:57:36] 2025-12-01 18:56:51,958 | INFO     | sum of square deviations: 1550397858.6315835
[2025-12-01 18:57:36] 2025-12-01 18:56:51,959 | INFO     | sum of deviations: 125786621389.47372
[2025-12-01 18:57:36] 2025-12-01 18:56:51,959 | INFO     | mean x: 1764609594.1403508
[2025-12-01 18:57:36] 2025-12-01 18:56:51,959 | INFO     | mean y: 4092985.7719298247
[2025-12-01 18:57:36] 2025-12-01 18:56:51,959 | INFO     | intersect: -143161919326.88434
[2025-12-01 18:57:36] 2025-12-01 18:56:51,959 | INFO     | chi2: 1.659468331211754
[2025-12-01 18:57:36] 2025-12-01 18:56:51,959 | INFO     | current chi2=1.659468331211754 (change=0.03331843211610904 %)
[2025-12-01 18:57:36] 2025-12-01 18:56:51,959 | INFO     | right removable region: 170
[2025-12-01 18:57:36] 2025-12-01 18:56:51,959 | INFO     | sum of square deviations: 1690417990.7272737
[2025-12-01 18:57:36] 2025-12-01 18:56:51,960 | INFO     | sum of deviations: 28718163648.636383
[2025-12-01 18:57:36] 2025-12-01 18:56:51,960 | INFO     | mean x: 1764610051.6363637
[2025-12-01 18:57:36] 2025-12-01 18:56:51,960 | INFO     | mean y: 4098199.7443181816
[2025-12-01 18:57:36] 2025-12-01 18:56:51,960 | INFO     | intersect: -29974499115.774754
[2025-12-01 18:57:36] 2025-12-01 18:56:51,960 | INFO     | chi2: 1.849560299886826
[2025-12-01 18:57:36] 2025-12-01 18:56:51,960 | INFO     | current chi2=1.849560299886826 (change=46.40177413658324 %)
[2025-12-01 18:57:36] 2025-12-01 18:56:51,960 | INFO     | sum of square deviations: 1550400419.9064379
[2025-12-01 18:57:36] 2025-12-01 18:56:51,960 | INFO     | sum of deviations: 19161234952.380127
[2025-12-01 18:57:36] 2025-12-01 18:56:51,960 | INFO     | mean x: 1764610204.134503
[2025-12-01 18:57:36] 2025-12-01 18:56:51,960 | INFO     | mean y: 4108587.7660818715
[2025-12-01 18:57:36] 2025-12-01 18:56:51,960 | INFO     | intersect: -21804522451.452244
[2025-12-01 18:57:36] 2025-12-01 18:56:51,960 | INFO     | chi2: 1.8375640360645675
[2025-12-01 18:57:36] 2025-12-01 18:56:51,960 | INFO     | current chi2=1.8375640360645675 (change=0.648600849779941 %)
[2025-12-01 18:57:36] 2025-12-01 18:56:51,960 | INFO     | left removable region: 20
[2025-12-01 18:57:36] 2025-12-01 18:56:51,960 | INFO     | sum of square deviations: 1046487559.3399996
[2025-12-01 18:57:36] 2025-12-01 18:56:51,960 | INFO     | sum of deviations: 51307410391.34
[2025-12-01 18:57:36] 2025-12-01 18:56:51,961 | INFO     | mean x: 1764610173.62
[2025-12-01 18:57:36] 2025-12-01 18:56:51,961 | INFO     | mean y: 4179581.953333333
[2025-12-01 18:57:36] 2025-12-01 18:56:51,961 | INFO     | intersect: -86511496166.5051
[2025-12-01 18:57:36] 2025-12-01 18:56:51,961 | INFO     | chi2: 0.006215234391098736
[2025-12-01 18:57:36] 2025-12-01 18:56:51,961 | INFO     | current memory leak: 49.03 B/s (using 150 data points, chi2=0.01)
[2025-12-01 18:57:36] 2025-12-01 18:56:51,961 | INFO     | could have reported an average CPU frequency of 3527 MHz (10 samples)
[2025-12-01 18:57:36] 2025-12-01 18:56:51,961 | INFO     | ..............................
[2025-12-01 18:57:36] 2025-12-01 18:56:51,961 | INFO     | . Timing measurements:
[2025-12-01 18:57:36] 2025-12-01 18:56:51,961 | INFO     | . get job = 0 s
[2025-12-01 18:57:36] 2025-12-01 18:56:51,961 | INFO     | . initial setup = 1 s
[2025-12-01 18:57:36] 2025-12-01 18:56:51,961 | INFO     | . payload setup = 2 s
[2025-12-01 18:57:36] 2025-12-01 18:56:51,961 | INFO     | . stage-in = 0 s
[2025-12-01 18:57:36] 2025-12-01 18:56:51,961 | INFO     | . payload execution = 10993 s
[2025-12-01 18:57:36] 2025-12-01 18:56:51,961 | INFO     | . stage-out = 1 s
[2025-12-01 18:57:36] 2025-12-01 18:56:51,961 | INFO     | . log creation = 0 s
[2025-12-01 18:57:36] 2025-12-01 18:56:51,961 | INFO     | ..............................
[2025-12-01 18:57:36] 2025-12-01 18:56:51,986 | INFO     | 
[2025-12-01 18:57:36] 2025-12-01 18:56:51,986 | INFO     | job summary report
[2025-12-01 18:57:36] 2025-12-01 18:56:51,986 | INFO     | --------------------------------------------------
[2025-12-01 18:57:36] 2025-12-01 18:56:51,986 | INFO     | PanDA job id: 6901249244
[2025-12-01 18:57:36] 2025-12-01 18:56:51,986 | INFO     | task id: 47531058
[2025-12-01 18:57:36] 2025-12-01 18:56:51,986 | INFO     | errors: (none)
[2025-12-01 18:57:36] 2025-12-01 18:56:51,986 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 18:57:36] 2025-12-01 18:56:51,986 | INFO     | pilot state: finished 
[2025-12-01 18:57:36] 2025-12-01 18:56:51,986 | INFO     | transexitcode: 0
[2025-12-01 18:57:36] 2025-12-01 18:56:51,986 | INFO     | exeerrorcode: 0
[2025-12-01 18:57:36] 2025-12-01 18:56:51,986 | INFO     | exeerrordiag: 
[2025-12-01 18:57:36] 2025-12-01 18:56:51,986 | INFO     | exitcode: 0
[2025-12-01 18:57:36] 2025-12-01 18:56:51,986 | INFO     | exitmsg: OK
[2025-12-01 18:57:36] 2025-12-01 18:56:51,986 | INFO     | cpuconsumptiontime: 108391 s
[2025-12-01 18:57:36] 2025-12-01 18:56:51,987 | INFO     | nevents: 1000
[2025-12-01 18:57:36] 2025-12-01 18:56:51,987 | INFO     | neventsw: 0
[2025-12-01 18:57:36] 2025-12-01 18:56:51,987 | INFO     | pid: 4057489
[2025-12-01 18:57:36] 2025-12-01 18:56:51,987 | INFO     | pgrp: 4057489
[2025-12-01 18:57:36] 2025-12-01 18:56:51,987 | INFO     | corecount: 12
[2025-12-01 18:57:36] 2025-12-01 18:56:51,987 | INFO     | event service: False
[2025-12-01 18:57:36] 2025-12-01 18:56:51,987 | INFO     | sizes: {0: 2284460, 1: 2284722, 11: 2284750, 10999: 2333478, 11001: 2342486, 11004: 2342542, 11007: 2342916}
[2025-12-01 18:57:36] 2025-12-01 18:56:51,987 | INFO     | --------------------------------------------------
[2025-12-01 18:57:36] 2025-12-01 18:56:51,987 | INFO     | 
[2025-12-01 18:57:36] 2025-12-01 18:56:51,987 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-12-01 18:57:36] 2025-12-01 18:56:51,994 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 18:57:36] 2025-12-01 18:56:51,994 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 18:57:36] 2025-12-01 18:56:51,994 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 18:57:36] 2025-12-01 18:56:51,994 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 18:57:36] 2025-12-01 18:56:51,994 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 18:57:36] 2025-12-01 18:56:51,994 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 18:57:36] 2025-12-01 18:56:51,994 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 18:57:36] 2025-12-01 18:56:51,994 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 18:57:36] 2025-12-01 18:56:51,994 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 18:57:36] 2025-12-01 18:56:51,994 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 18:57:36] 2025-12-01 18:56:51,994 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 18:57:36] 2025-12-01 18:56:51,994 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 18:57:36] 2025-12-01 18:56:51,994 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 18:57:36] 2025-12-01 18:56:51,994 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 18:57:36] 2025-12-01 18:56:51,994 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 18:57:36] 2025-12-01 18:56:51,994 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 18:57:36] 2025-12-01 18:56:51,994 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 18:57:36] 2025-12-01 18:56:51,994 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 18:57:36] 2025-12-01 18:56:51,994 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 18:57:36] 2025-12-01 18:56:51,994 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 18:57:36] 2025-12-01 18:56:51,994 | INFO     | job 6901249244 has completed (purged errors)
[2025-12-01 18:57:36] 2025-12-01 18:56:51,994 | INFO     | overall cleanup function is called
[2025-12-01 18:57:36] 2025-12-01 18:56:53,002 | INFO     | --- collectZombieJob: --- 10, [4057489]
[2025-12-01 18:57:36] 2025-12-01 18:56:53,002 | INFO     | zombie collector waiting for pid 4057489
[2025-12-01 18:57:36] 2025-12-01 18:56:53,002 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 18:57:36] 2025-12-01 18:56:53,002 | INFO     | collected zombie processes
[2025-12-01 18:57:36] 2025-12-01 18:56:53,002 | INFO     | will attempt to kill all subprocesses of pid=4057489
[2025-12-01 18:57:36] 2025-12-01 18:56:53,029 | INFO     | process IDs to be killed: [4057489] (in reverse order)
[2025-12-01 18:57:36] 2025-12-01 18:56:53,044 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 18:57:36] 2025-12-01 18:56:53,044 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 18:57:36] 2025-12-01 18:56:53,045 | INFO     | did not find any defunct processes belonging to 4057489
[2025-12-01 18:57:36] 2025-12-01 18:56:53,046 | INFO     | did not find any defunct processes belonging to 4057489
[2025-12-01 18:57:36] 2025-12-01 18:56:53,047 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 18:57:36] 2025-12-01 18:56:53,047 | INFO     | ready for new job
[2025-12-01 18:57:36] 2025-12-01 18:56:53,047 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 18:57:36] 2025-12-01 18:56:53,056 | INFO     | ***************************************
[2025-12-01 18:57:36] 2025-12-01 18:56:53,056 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 18:57:36] 2025-12-01 18:56:53,056 | INFO     | ***************************************
[2025-12-01 18:57:36] 2025-12-01 18:56:53,056 | INFO     | 
[2025-12-01 18:57:36] 2025-12-01 18:56:53,056 | INFO     | architecture information:
[2025-12-01 18:57:36] 2025-12-01 18:56:53,056 | INFO     | executing command: cat /etc/os-release
[2025-12-01 18:57:36] 2025-12-01 18:56:53,060 | INFO     | cat /etc/os-release:
[2025-12-01 18:57:36] NAME="CentOS Linux"
[2025-12-01 18:57:36] VERSION="7 (Core)"
[2025-12-01 18:57:36] ID="centos"
[2025-12-01 18:57:36] ID_LIKE="rhel fedora"
[2025-12-01 18:57:36] VERSION_ID="7"
[2025-12-01 18:57:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 18:57:36] ANSI_COLOR="0;31"
[2025-12-01 18:57:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 18:57:36] HOME_URL="https://www.centos.org/"
[2025-12-01 18:57:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 18:57:36] 
[2025-12-01 18:57:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 18:57:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 18:57:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 18:57:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 18:57:36] 
[2025-12-01 18:57:36] 2025-12-01 18:56:53,061 | INFO     | ***************************************
[2025-12-01 18:57:36] 2025-12-01 18:56:53,563 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-12-01 18:57:36] 2025-12-01 18:56:53,569 | INFO     | sufficient remaining disk space (268244615168 B)
[2025-12-01 18:57:36] 2025-12-01 18:56:53,569 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 18:57:36] 2025-12-01 18:56:53,569 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 18:57:36] 2025-12-01 18:56:53,569 | INFO     | update_server=False
[2025-12-01 18:57:36] 2025-12-01 18:56:53,569 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 18:57:36] 2025-12-01 18:56:53,569 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 18:57:36] 2025-12-01 18:56:54,046 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 18:57:36] 2025-12-01 18:56:54,046 | INFO     | aborting loop
[2025-12-01 18:57:36] 2025-12-01 18:56:54,182 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 18:57:36] 2025-12-01 18:56:54,380 | INFO     | all job control threads have been joined
[2025-12-01 18:57:36] 2025-12-01 18:56:54,483 | INFO     | all data control threads have been joined
[2025-12-01 18:57:36] 2025-12-01 18:56:54,573 | INFO     | [job] queue monitor thread has finished
[2025-12-01 18:57:36] 2025-12-01 18:56:54,574 | INFO     | [job] retrieve thread has finished
[2025-12-01 18:57:36] 2025-12-01 18:56:54,702 | INFO     | [payload] validate_post thread has finished
[2025-12-01 18:57:36] 2025-12-01 18:56:54,912 | INFO     | [job] validate thread has finished
[2025-12-01 18:57:36] 2025-12-01 18:56:54,923 | INFO     | all payload control threads have been joined
[2025-12-01 18:57:36] 2025-12-01 18:56:54,944 | INFO     | [data] copytool_in thread has finished
[2025-12-01 18:57:36] 2025-12-01 18:56:54,963 | INFO     | [payload] failed_post thread has finished
[2025-12-01 18:57:36] 2025-12-01 18:56:55,016 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 18:57:36] 2025-12-01 18:56:55,052 | INFO     | [job] job monitor thread has finished
[2025-12-01 18:57:36] 2025-12-01 18:56:55,266 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 18:57:36] 2025-12-01 18:56:55,385 | INFO     | [job] control thread has finished
[2025-12-01 18:57:36] 2025-12-01 18:56:55,488 | INFO     | [data] control thread has finished
[2025-12-01 18:57:36] 2025-12-01 18:56:55,580 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 18:57:36] 2025-12-01 18:56:55,647 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 18:57:36] 2025-12-01 18:56:55,693 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 18:57:36] 2025-12-01 18:56:55,927 | INFO     | [payload] control thread has finished
[2025-12-01 18:57:36] 2025-12-01 18:56:56,187 | INFO     | [data] copytool_out thread has finished
[2025-12-01 18:57:36] 2025-12-01 18:56:59,653 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 18:57:36] 2025-12-01 18:57:24,210 | INFO     | PID=4050245 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-01 18:57:36] 2025-12-01 18:57:24,210 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 18:57:36] 2025-12-01 18:57:24,210 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 18:57:36] 2025-12-01 18:57:24,210 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 18:57:36] 2025-12-01 18:57:30,984 | INFO     | [monitor] cgroup control has ended
[2025-12-01 18:57:36] 2025-12-01 18:57:31,116 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 126007595677504)>', '<ExcThread(monitor, started 126006891378432)>']
[2025-12-01 18:57:36] 2025-12-01 18:57:31,242 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 18:57:36] 2025-12-01 18:57:31,242 | INFO     | [monitor] control thread has ended
[2025-12-01 18:57:36] 2025-12-01 18:57:36,141 | INFO     | all workflow threads have been joined
[2025-12-01 18:57:36] 2025-12-01 18:57:36,141 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 18:57:36] 2025-12-01 18:57:36,141 | INFO     | traces error code: 0
[2025-12-01 18:57:36] 2025-12-01 18:57:36,141 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 18:57:36] 2025-12-01 18:57:36,190 [wrapper] ==== pilot stdout END ====
[2025-12-01 18:57:36] 2025-12-01 18:57:36,191 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 18:57:36] 2025-12-01 18:57:36,192 [wrapper] pilotpid: 4050245
[2025-12-01 18:57:36] 2025-12-01 18:57:36,193 [wrapper] Pilot exit status: 0
[2025-12-01 18:57:36] 2025-12-01 18:57:36,196 [wrapper] pandaids: 6901249244
[2025-12-01 18:57:36] 2025-12-01 18:57:36,205 [wrapper] cleanup supervisor_pilot 4134673 4050246
[2025-12-01 18:57:36] 2025-12-01 18:57:36,206 [wrapper] Test setup, not cleaning
[2025-12-01 18:57:36] 2025-12-01 18:57:36,206 [wrapper] apfmon messages muted
[2025-12-01 18:57:36] 2025-12-01 18:57:36,207 [wrapper] ==== wrapper stdout END ====
[2025-12-01 18:57:36] 2025-12-01 18:57:36,208 [wrapper] ==== wrapper stderr END ====
[2025-12-01 18:57:36]  *** Error codes and diagnostics ***
[2025-12-01 18:57:36]     "exeErrorCode": 0,
[2025-12-01 18:57:36]     "exeErrorDiag": "",
[2025-12-01 18:57:36]     "pilotErrorCode": 0,
[2025-12-01 18:57:36]     "pilotErrorDiag": "",
[2025-12-01 18:57:36]  *** Listing of results directory ***
[2025-12-01 18:57:36] total 1088564
[2025-12-01 18:57:36] -rw-r--r-- 1 boinc boinc    576529 Nov 29 09:19 pilot3.tar.gz
[2025-12-01 18:57:36] -rwx------ 1 boinc boinc     36292 Nov 29 09:22 runpilot2-wrapper.sh
[2025-12-01 18:57:36] -rw-r--r-- 1 boinc boinc      5112 Nov 29 09:26 queuedata.json
[2025-12-01 18:57:36] -rw-r--r-- 1 boinc boinc       100 Dec  1 15:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 18:57:36] -rwxr-xr-x 1 boinc boinc      7986 Dec  1 15:53 run_atlas
[2025-12-01 18:57:36] -rw-r--r-- 1 boinc boinc       105 Dec  1 15:53 job.xml
[2025-12-01 18:57:36] -rw-r--r-- 2 boinc boinc    590119 Dec  1 15:53 input.tar.gz
[2025-12-01 18:57:36] -rw-r--r-- 1 boinc boinc      9907 Dec  1 15:53 init_data.xml
[2025-12-01 18:57:36] -rw-r--r-- 2 boinc boinc 378097423 Dec  1 15:53 EVNT.47531050._000570.pool.root.1
[2025-12-01 18:57:36] -rw-r--r-- 2 boinc boinc     15847 Dec  1 15:53 start_atlas.sh
[2025-12-01 18:57:36] drwxrwx--x 2 boinc boinc      4096 Dec  1 15:53 shared
[2025-12-01 18:57:36] -rw-r--r-- 1 boinc boinc         0 Dec  1 15:53 boinc_lockfile
[2025-12-01 18:57:36] -rw-r--r-- 1 boinc boinc      2880 Dec  1 15:53 pandaJob.out
[2025-12-01 18:57:36] -rw------- 1 boinc boinc    992142 Dec  1 15:53 agis_schedconf.cvmfs.json
[2025-12-01 18:57:36] drwx------ 5 boinc boinc      4096 Dec  1 15:53 pilot3
[2025-12-01 18:57:36] -rw-r--r-- 1 boinc boinc       532 Dec  1 18:52 boinc_task_state.xml
[2025-12-01 18:57:36] -rw------- 1 boinc boinc 725399251 Dec  1 18:56 HITS.47531058._001857.pool.root.1
[2025-12-01 18:57:36] -rw------- 1 boinc boinc      1056 Dec  1 18:56 memory_monitor_summary.json
[2025-12-01 18:57:36] -rw------- 1 boinc boinc   1516240 Dec  1 18:56 agis_ddmendpoints.agis.ALL.json
[2025-12-01 18:57:36] -rw------- 1 boinc boinc   2025622 Dec  1 18:56 log.47531058._001857.job.log.tgz.1
[2025-12-01 18:57:36] -rw------- 1 boinc boinc        95 Dec  1 18:56 pilot_heartbeat.json
[2025-12-01 18:57:36] -rw------- 1 boinc boinc     27436 Dec  1 18:56 heartbeat.json
[2025-12-01 18:57:36] -rw-r--r-- 1 boinc boinc      8192 Dec  1 18:57 boinc_mmap_file
[2025-12-01 18:57:36] -rw-r--r-- 1 boinc boinc        29 Dec  1 18:57 wrapper_checkpoint.txt
[2025-12-01 18:57:36] -rw------- 1 boinc boinc      4756 Dec  1 18:57 pilotlog.txt
[2025-12-01 18:57:36] -rw------- 1 boinc boinc   1590734 Dec  1 18:57 log.47531058._001857.job.log.1
[2025-12-01 18:57:36] -rw------- 1 boinc boinc       353 Dec  1 18:57 output.list
[2025-12-01 18:57:36] -rw-r--r-- 1 boinc boinc       620 Dec  1 18:57 runtime_log
[2025-12-01 18:57:36] -rw------- 1 boinc boinc   3655680 Dec  1 18:57 result.tar.gz
[2025-12-01 18:57:36] -rw------- 1 boinc boinc       661 Dec  1 18:57 U8fKDmELWj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmvrLKDmYVQCgn.diag
[2025-12-01 18:57:36] -rw-r--r-- 1 boinc boinc      9048 Dec  1 18:57 runtime_log.err
[2025-12-01 18:57:36] -rw-r--r-- 1 boinc boinc     21608 Dec  1 18:57 stderr.txt
[2025-12-01 18:57:36] HITS file was successfully produced:
[2025-12-01 18:57:36] -rw------- 1 boinc boinc 725399251 Dec  1 18:56 shared/HITS.pool.root.1
[2025-12-01 18:57:36]  *** Contents of shared directory: ***
[2025-12-01 18:57:36] total 1081812
[2025-12-01 18:57:36] -rw-r--r-- 2 boinc boinc    590119 Dec  1 15:53 input.tar.gz
[2025-12-01 18:57:36] -rw-r--r-- 2 boinc boinc 378097423 Dec  1 15:53 ATLAS.root_0
[2025-12-01 18:57:36] -rw-r--r-- 2 boinc boinc     15847 Dec  1 15:53 start_atlas.sh
[2025-12-01 18:57:36] -rw------- 1 boinc boinc 725399251 Dec  1 18:56 HITS.pool.root.1
[2025-12-01 18:57:36] -rw------- 1 boinc boinc   3655680 Dec  1 18:57 result.tar.gz
18:57:37 (4046508): run_atlas exited; CPU time 108123.862391
18:57:37 (4046508): called boinc_finish(0)

</stderr_txt>
]]>

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