Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:56:19 (4001): wrapper (7.7.26015): starting
06:56:19 (4001): wrapper: running run_atlas (--nthreads 12)
[2025-12-01 06:56:19] Arguments: --nthreads 12
[2025-12-01 06:56:19] Threads: 12
[2025-12-01 06:56:19] Checking for CVMFS
[2025-12-01 06:56:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 06:56:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 06:56:20] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 06:56:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 06:56:20] 2.11.2.0 10903 13314 88648 153516 3 59 13572200 20275201 1 130560 0 5882065 99.779 1618297 41229 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-01 06:56:20] CVMFS is ok
[2025-12-01 06:56:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 06:56:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 06:56:20] Further information can be found at the LHC@home message board.
[2025-12-01 06:56:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 06:56:20] Checking for apptainer binary...
[2025-12-01 06:56:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 06:56:20] Running /usr/bin/apptainer --version
[2025-12-01 06:56:20] apptainer version 1.3.2-1.el7
[2025-12-01 06:56:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 06:56:21] c-205-22.aglt2.org
[2025-12-01 06:56:21] apptainer works
[2025-12-01 06:56:21] Set ATHENA_PROC_NUMBER=12
[2025-12-01 06:56:21] Set ATHENA_CORE_NUMBER=12
[2025-12-01 06:56:21] Starting ATLAS job with PandaID=6904565375
[2025-12-01 06:56:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 09:40:58]  *** The last 200 lines of the pilot log: ***
[2025-12-01 09:40:58] 2025-12-01 14:40:06,643 | INFO     | monitor loop #722: job 0:6904565375 is in state 'finished'
[2025-12-01 09:40:58] 2025-12-01 14:40:06,643 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 09:40:58] 2025-12-01 14:40:07,367 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-01 09:40:58] 2025-12-01 14:40:07,371 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-12-01 09:40:58] 2025-12-01 14:40:07,374 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6904565375/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 09:40:58] 2025-12-01 14:40:07,374 | INFO     | extracted standard info from prmon json
[2025-12-01 09:40:58] 2025-12-01 14:40:07,375 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 09:40:58] 2025-12-01 14:40:07,375 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 09:40:58] 2025-12-01 14:40:07,375 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-01 09:40:58] 2025-12-01 14:40:07,375 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-01 09:40:58] 2025-12-01 14:40:07,379 | INFO     | fitting pss+swap vs Time
[2025-12-01 09:40:58] 2025-12-01 14:40:07,379 | INFO     | sum of square deviations: 1294014960.0
[2025-12-01 09:40:58] 2025-12-01 14:40:07,380 | INFO     | sum of deviations: -3561468652.000004
[2025-12-01 09:40:58] 2025-12-01 14:40:07,380 | INFO     | mean x: 1764595106.0
[2025-12-01 09:40:58] 2025-12-01 14:40:07,380 | INFO     | mean y: 2743385.4906832296
[2025-12-01 09:40:58] 2025-12-01 14:40:07,380 | INFO     | intersect: 4859372054.985837
[2025-12-01 09:40:58] 2025-12-01 14:40:07,380 | INFO     | chi2: 2.441458061791459
[2025-12-01 09:40:58] 2025-12-01 14:40:07,381 | INFO     | sum of square deviations: 1177156955.0
[2025-12-01 09:40:58] 2025-12-01 14:40:07,381 | INFO     | sum of deviations: 8290742440.499995
[2025-12-01 09:40:58] 2025-12-01 14:40:07,381 | INFO     | mean x: 1764594953.5
[2025-12-01 09:40:58] 2025-12-01 14:40:07,382 | INFO     | mean y: 2758466.391025641
[2025-12-01 09:40:58] 2025-12-01 14:40:07,382 | INFO     | intersect: -12425322775.565842
[2025-12-01 09:40:58] 2025-12-01 14:40:07,382 | INFO     | chi2: 1.669007588101706
[2025-12-01 09:40:58] 2025-12-01 14:40:07,382 | INFO     | current chi2=1.669007588101706 (change=31.638899958124007 %)
[2025-12-01 09:40:58] 2025-12-01 14:40:07,382 | INFO     | sum of square deviations: 1067554900.0
[2025-12-01 09:40:58] 2025-12-01 14:40:07,383 | INFO     | sum of deviations: 8160137444.999998
[2025-12-01 09:40:58] 2025-12-01 14:40:07,383 | INFO     | mean x: 1764594801.0
[2025-12-01 09:40:58] 2025-12-01 14:40:07,383 | INFO     | mean y: 2758284.5298013245
[2025-12-01 09:40:58] 2025-12-01 14:40:07,383 | INFO     | intersect: -13485387487.544704
[2025-12-01 09:40:58] 2025-12-01 14:40:07,384 | INFO     | chi2: 1.6704826795624885
[2025-12-01 09:40:58] 2025-12-01 14:40:07,384 | INFO     | current chi2=1.6704826795624885 (change=-0.0883813513670334 %)
[2025-12-01 09:40:58] 2025-12-01 14:40:07,384 | INFO     | right removable region: 150
[2025-12-01 09:40:58] 2025-12-01 14:40:07,384 | INFO     | sum of square deviations: 1177156955.0
[2025-12-01 09:40:58] 2025-12-01 14:40:07,385 | INFO     | sum of deviations: -30935341963.5
[2025-12-01 09:40:58] 2025-12-01 14:40:07,385 | INFO     | mean x: 1764595258.5
[2025-12-01 09:40:58] 2025-12-01 14:40:07,385 | INFO     | mean y: 2778658.737179487
[2025-12-01 09:40:58] 2025-12-01 14:40:07,385 | INFO     | intersect: 46375828163.31084
[2025-12-01 09:40:58] 2025-12-01 14:40:07,386 | INFO     | chi2: 1.006278580645191
[2025-12-01 09:40:58] 2025-12-01 14:40:07,386 | INFO     | current chi2=1.006278580645191 (change=58.78370403353077 %)
[2025-12-01 09:40:58] 2025-12-01 14:40:07,386 | INFO     | sum of square deviations: 1067554900.0
[2025-12-01 09:40:58] 2025-12-01 14:40:07,387 | INFO     | sum of deviations: -35029389751.0
[2025-12-01 09:40:58] 2025-12-01 14:40:07,387 | INFO     | mean x: 1764595411.0
[2025-12-01 09:40:58] 2025-12-01 14:40:07,387 | INFO     | mean y: 2784236.0662251655
[2025-12-01 09:40:58] 2025-12-01 14:40:07,387 | INFO     | intersect: 57903975457.9369
[2025-12-01 09:40:58] 2025-12-01 14:40:07,387 | INFO     | chi2: 0.9281666919892448
[2025-12-01 09:40:58] 2025-12-01 14:40:07,387 | INFO     | current chi2=0.9281666919892448 (change=7.76245168667543 %)
[2025-12-01 09:40:58] 2025-12-01 14:40:07,387 | INFO     | left removable region: 20
[2025-12-01 09:40:58] 2025-12-01 14:40:07,388 | INFO     | sum of square deviations: 681212772.5
[2025-12-01 09:40:58] 2025-12-01 14:40:07,388 | INFO     | sum of deviations: -14313918674.5
[2025-12-01 09:40:58] 2025-12-01 14:40:07,389 | INFO     | mean x: 1764595380.5
[2025-12-01 09:40:58] 2025-12-01 14:40:07,389 | INFO     | mean y: 2789535.4076923076
[2025-12-01 09:40:58] 2025-12-01 14:40:07,389 | INFO     | intersect: 37081182351.178604
[2025-12-01 09:40:58] 2025-12-01 14:40:07,389 | INFO     | chi2: 0.10921246142127747
[2025-12-01 09:40:58] 2025-12-01 14:40:07,389 | INFO     | current memory leak: -21.01 B/s (using 130 data points, chi2=0.11)
[2025-12-01 09:40:58] 2025-12-01 14:40:07,390 | INFO     | could have reported an average CPU frequency of 2236 MHz (9 samples)
[2025-12-01 09:40:58] 2025-12-01 14:40:07,390 | INFO     | ..............................
[2025-12-01 09:40:58] 2025-12-01 14:40:07,390 | INFO     | . Timing measurements:
[2025-12-01 09:40:58] 2025-12-01 14:40:07,390 | INFO     | . get job = 0 s
[2025-12-01 09:40:58] 2025-12-01 14:40:07,390 | INFO     | . initial setup = 2 s
[2025-12-01 09:40:58] 2025-12-01 14:40:07,390 | INFO     | . payload setup = 7 s
[2025-12-01 09:40:58] 2025-12-01 14:40:07,390 | INFO     | . stage-in = 0 s
[2025-12-01 09:40:58] 2025-12-01 14:40:07,390 | INFO     | . payload execution = 9774 s
[2025-12-01 09:40:58] 2025-12-01 14:40:07,390 | INFO     | . stage-out = 0 s
[2025-12-01 09:40:58] 2025-12-01 14:40:07,391 | INFO     | . log creation = 0 s
[2025-12-01 09:40:58] 2025-12-01 14:40:07,391 | INFO     | ..............................
[2025-12-01 09:40:58] 2025-12-01 14:40:07,914 | INFO     | 
[2025-12-01 09:40:58] 2025-12-01 14:40:07,915 | INFO     | job summary report
[2025-12-01 09:40:58] 2025-12-01 14:40:07,915 | INFO     | --------------------------------------------------
[2025-12-01 09:40:58] 2025-12-01 14:40:07,915 | INFO     | PanDA job id: 6904565375
[2025-12-01 09:40:58] 2025-12-01 14:40:07,915 | INFO     | task id: 47523877
[2025-12-01 09:40:58] 2025-12-01 14:40:07,915 | INFO     | errors: (none)
[2025-12-01 09:40:58] 2025-12-01 14:40:07,916 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 09:40:58] 2025-12-01 14:40:07,916 | INFO     | pilot state: finished 
[2025-12-01 09:40:58] 2025-12-01 14:40:07,916 | INFO     | transexitcode: 0
[2025-12-01 09:40:58] 2025-12-01 14:40:07,916 | INFO     | exeerrorcode: 0
[2025-12-01 09:40:58] 2025-12-01 14:40:07,916 | INFO     | exeerrordiag: 
[2025-12-01 09:40:58] 2025-12-01 14:40:07,916 | INFO     | exitcode: 0
[2025-12-01 09:40:58] 2025-12-01 14:40:07,917 | INFO     | exitmsg: OK
[2025-12-01 09:40:58] 2025-12-01 14:40:07,917 | INFO     | cpuconsumptiontime: 108724 s
[2025-12-01 09:40:58] 2025-12-01 14:40:07,917 | INFO     | nevents: 400
[2025-12-01 09:40:58] 2025-12-01 14:40:07,917 | INFO     | neventsw: 0
[2025-12-01 09:40:58] 2025-12-01 14:40:07,917 | INFO     | pid: 14091
[2025-12-01 09:40:58] 2025-12-01 14:40:07,917 | INFO     | pgrp: 14091
[2025-12-01 09:40:58] 2025-12-01 14:40:07,917 | INFO     | corecount: 12
[2025-12-01 09:40:58] 2025-12-01 14:40:07,917 | INFO     | event service: False
[2025-12-01 09:40:58] 2025-12-01 14:40:07,917 | INFO     | sizes: {0: 2283755, 1: 2283954, 6: 2284216, 11: 2284244, 9785: 2312734, 9786: 2321732, 9787: 2321916, 9795: 2322202}
[2025-12-01 09:40:58] 2025-12-01 14:40:07,917 | INFO     | --------------------------------------------------
[2025-12-01 09:40:58] 2025-12-01 14:40:07,918 | INFO     | 
[2025-12-01 09:40:58] 2025-12-01 14:40:07,918 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-01 09:40:58] 2025-12-01 14:40:07,950 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 09:40:58] 2025-12-01 14:40:07,951 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 09:40:58] 2025-12-01 14:40:07,951 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 09:40:58] 2025-12-01 14:40:07,951 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 09:40:58] 2025-12-01 14:40:07,951 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 09:40:58] 2025-12-01 14:40:07,951 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 09:40:58] 2025-12-01 14:40:07,951 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 09:40:58] 2025-12-01 14:40:07,952 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 09:40:58] 2025-12-01 14:40:07,952 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 09:40:58] 2025-12-01 14:40:07,952 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 09:40:58] 2025-12-01 14:40:07,952 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 09:40:58] 2025-12-01 14:40:07,952 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 09:40:58] 2025-12-01 14:40:07,953 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 09:40:58] 2025-12-01 14:40:07,953 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 09:40:58] 2025-12-01 14:40:07,953 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 09:40:58] 2025-12-01 14:40:07,953 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 09:40:58] 2025-12-01 14:40:07,953 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 09:40:58] 2025-12-01 14:40:07,953 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 09:40:58] 2025-12-01 14:40:07,954 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 09:40:58] 2025-12-01 14:40:07,954 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 09:40:58] 2025-12-01 14:40:07,954 | INFO     | job 6904565375 has completed (purged errors)
[2025-12-01 09:40:58] 2025-12-01 14:40:07,954 | INFO     | overall cleanup function is called
[2025-12-01 09:40:58] 2025-12-01 14:40:08,962 | INFO     | --- collectZombieJob: --- 10, [14091]
[2025-12-01 09:40:58] 2025-12-01 14:40:08,963 | INFO     | zombie collector waiting for pid 14091
[2025-12-01 09:40:58] 2025-12-01 14:40:08,963 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 09:40:58] 2025-12-01 14:40:08,963 | INFO     | collected zombie processes
[2025-12-01 09:40:58] 2025-12-01 14:40:08,963 | INFO     | will attempt to kill all subprocesses of pid=14091
[2025-12-01 09:40:58] 2025-12-01 14:40:09,053 | INFO     | process IDs to be killed: [14091] (in reverse order)
[2025-12-01 09:40:58] 2025-12-01 14:40:09,103 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 09:40:58] 2025-12-01 14:40:09,104 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 09:40:58] 2025-12-01 14:40:09,107 | INFO     | did not find any defunct processes belonging to 14091
[2025-12-01 09:40:58] 2025-12-01 14:40:09,109 | INFO     | did not find any defunct processes belonging to 14091
[2025-12-01 09:40:58] 2025-12-01 14:40:09,111 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 09:40:58] 2025-12-01 14:40:09,111 | INFO     | ready for new job
[2025-12-01 09:40:58] 2025-12-01 14:40:09,111 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 09:40:58] 2025-12-01 14:40:09,113 | INFO     | ***************************************
[2025-12-01 09:40:58] 2025-12-01 14:40:09,113 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 09:40:58] 2025-12-01 14:40:09,113 | INFO     | ***************************************
[2025-12-01 09:40:58] 2025-12-01 14:40:09,113 | INFO     | 
[2025-12-01 09:40:58] 2025-12-01 14:40:09,113 | INFO     | architecture information:
[2025-12-01 09:40:58] 2025-12-01 14:40:09,114 | INFO     | executing command: cat /etc/os-release
[2025-12-01 09:40:58] 2025-12-01 14:40:09,128 | INFO     | cat /etc/os-release:
[2025-12-01 09:40:58] NAME="CentOS Linux"
[2025-12-01 09:40:58] VERSION="7 (Core)"
[2025-12-01 09:40:58] ID="centos"
[2025-12-01 09:40:58] ID_LIKE="rhel fedora"
[2025-12-01 09:40:58] VERSION_ID="7"
[2025-12-01 09:40:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 09:40:58] ANSI_COLOR="0;31"
[2025-12-01 09:40:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 09:40:58] HOME_URL="https://www.centos.org/"
[2025-12-01 09:40:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 09:40:58] 
[2025-12-01 09:40:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 09:40:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 09:40:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 09:40:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 09:40:58] 
[2025-12-01 09:40:58] 2025-12-01 14:40:09,128 | INFO     | ***************************************
[2025-12-01 09:40:58] 2025-12-01 14:40:09,631 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-01 09:40:58] 2025-12-01 14:40:09,648 | INFO     | sufficient remaining disk space (29057089536 B)
[2025-12-01 09:40:58] 2025-12-01 14:40:09,648 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 09:40:58] 2025-12-01 14:40:09,649 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 09:40:58] 2025-12-01 14:40:09,649 | INFO     | update_server=False
[2025-12-01 09:40:58] 2025-12-01 14:40:09,649 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 09:40:58] 2025-12-01 14:40:09,649 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 09:40:58] 2025-12-01 14:40:09,851 | INFO     | all job control threads have been joined
[2025-12-01 09:40:58] 2025-12-01 14:40:10,155 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 09:40:58] 2025-12-01 14:40:10,155 | INFO     | aborting loop
[2025-12-01 09:40:58] 2025-12-01 14:40:10,401 | INFO     | all payload control threads have been joined
[2025-12-01 09:40:58] 2025-12-01 14:40:10,655 | INFO     | [job] retrieve thread has finished
[2025-12-01 09:40:58] 2025-12-01 14:40:10,663 | INFO     | all data control threads have been joined
[2025-12-01 09:40:58] 2025-12-01 14:40:10,751 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 09:40:58] 2025-12-01 14:40:10,857 | INFO     | [job] control thread has finished
[2025-12-01 09:40:58] 2025-12-01 14:40:10,865 | INFO     | [job] validate thread has finished
[2025-12-01 09:40:58] 2025-12-01 14:40:11,003 | INFO     | [payload] failed_post thread has finished
[2025-12-01 09:40:58] 2025-12-01 14:40:11,064 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 09:40:58] 2025-12-01 14:40:11,075 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 09:40:58] 2025-12-01 14:40:11,159 | INFO     | [job] job monitor thread has finished
[2025-12-01 09:40:58] 2025-12-01 14:40:11,201 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 09:40:58] 2025-12-01 14:40:11,406 | INFO     | [payload] control thread has finished
[2025-12-01 09:40:58] 2025-12-01 14:40:11,423 | INFO     | [data] copytool_in thread has finished
[2025-12-01 09:40:58] 2025-12-01 14:40:11,612 | INFO     | [payload] validate_post thread has finished
[2025-12-01 09:40:58] 2025-12-01 14:40:11,655 | INFO     | [data] copytool_out thread has finished
[2025-12-01 09:40:58] 2025-12-01 14:40:11,669 | INFO     | [data] control thread has finished
[2025-12-01 09:40:58] 2025-12-01 14:40:11,984 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 09:40:58] 2025-12-01 14:40:12,482 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 09:40:58] 2025-12-01 14:40:13,488 | INFO     | [job] queue monitor thread has finished
[2025-12-01 09:40:58] 2025-12-01 14:40:14,757 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 09:40:58] 2025-12-01 14:40:39,544 | INFO     | PID=7681 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-01 09:40:58] 2025-12-01 14:40:39,544 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 09:40:58] 2025-12-01 14:40:39,544 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 09:40:58] 2025-12-01 14:40:39,544 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 09:40:58] 2025-12-01 14:40:52,443 | INFO     | [monitor] cgroup control has ended
[2025-12-01 09:40:58] 2025-12-01 14:40:52,663 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140570445969216)>', '<ExcThread(monitor, started 140569691014912)>']
[2025-12-01 09:40:58] 2025-12-01 14:40:53,613 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 09:40:58] 2025-12-01 14:40:53,613 | INFO     | [monitor] control thread has ended
[2025-12-01 09:40:58] 2025-12-01 14:40:57,688 | INFO     | all workflow threads have been joined
[2025-12-01 09:40:58] 2025-12-01 14:40:57,695 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 09:40:58] 2025-12-01 14:40:57,696 | INFO     | traces error code: 0
[2025-12-01 09:40:58] 2025-12-01 14:40:57,696 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 09:40:58] 2025-12-01 14:40:57,791 [wrapper] ==== pilot stdout END ====
[2025-12-01 09:40:58] 2025-12-01 14:40:57,794 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 09:40:58] 2025-12-01 14:40:57,798 [wrapper] pilotpid: 7681
[2025-12-01 09:40:58] 2025-12-01 14:40:57,801 [wrapper] Pilot exit status: 0
[2025-12-01 09:40:58] 2025-12-01 14:40:57,816 [wrapper] pandaids: 6904565375
[2025-12-01 09:40:58] 2025-12-01 14:40:57,859 [wrapper] cleanup supervisor_pilot 14727 7682
[2025-12-01 09:40:58] 2025-12-01 14:40:57,863 [wrapper] Test setup, not cleaning
[2025-12-01 09:40:58] 2025-12-01 14:40:57,867 [wrapper] apfmon messages muted
[2025-12-01 09:40:58] 2025-12-01 14:40:57,871 [wrapper] ==== wrapper stdout END ====
[2025-12-01 09:40:58] 2025-12-01 14:40:57,875 [wrapper] ==== wrapper stderr END ====
[2025-12-01 09:40:58]  *** Error codes and diagnostics ***
[2025-12-01 09:40:58]     "exeErrorCode": 0,
[2025-12-01 09:40:58]     "exeErrorDiag": "",
[2025-12-01 09:40:58]     "pilotErrorCode": 0,
[2025-12-01 09:40:58]     "pilotErrorDiag": "",
[2025-12-01 09:40:58]  *** Listing of results directory ***
[2025-12-01 09:40:58] total 620908
[2025-12-01 09:40:58] -rw-r--r-- 1 boincer umatlas    576529 Nov 29 04:19 pilot3.tar.gz
[2025-12-01 09:40:58] -rwx------ 1 boincer umatlas     36292 Nov 29 04:22 runpilot2-wrapper.sh
[2025-12-01 09:40:58] -rw-r--r-- 1 boincer umatlas      5112 Nov 29 04:25 queuedata.json
[2025-12-01 09:40:58] -rw-r--r-- 1 boincer umatlas       100 Dec  1 06:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 09:40:58] -rwxr-xr-x 1 boincer umatlas      7986 Dec  1 06:56 run_atlas
[2025-12-01 09:40:58] -rw-r--r-- 1 boincer umatlas       105 Dec  1 06:56 job.xml
[2025-12-01 09:40:58] -rw-r--r-- 2 boincer umatlas 304186420 Dec  1 06:56 EVNT.47523873._000001.pool.root.1
[2025-12-01 09:40:58] -rw-r--r-- 2 boincer umatlas     15847 Dec  1 06:56 start_atlas.sh
[2025-12-01 09:40:58] drwxrwx--x 2 boincer umatlas      4096 Dec  1 06:56 shared
[2025-12-01 09:40:58] -rw-r--r-- 2 boincer umatlas    589971 Dec  1 06:56 input.tar.gz
[2025-12-01 09:40:58] -rw-r--r-- 1 boincer umatlas         0 Dec  1 06:56 boinc_lockfile
[2025-12-01 09:40:58] -rw-r--r-- 1 boincer umatlas      2640 Dec  1 06:56 pandaJob.out
[2025-12-01 09:40:58] -rw------- 1 boincer umatlas        57 Dec  1 06:56 setup.sh.local
[2025-12-01 09:40:58] -rw------- 1 boincer umatlas    992117 Dec  1 06:56 agis_schedconf.cvmfs.json
[2025-12-01 09:40:58] -rw------- 1 boincer umatlas   1516240 Dec  1 06:56 agis_ddmendpoints.agis.ALL.json
[2025-12-01 09:40:58] drwx------ 5 boincer umatlas      4096 Dec  1 06:56 pilot3
[2025-12-01 09:40:58] -rw-r--r-- 1 boincer umatlas      5955 Dec  1 09:36 init_data.xml
[2025-12-01 09:40:58] -rw------- 1 boincer umatlas 324040117 Dec  1 09:39 HITS.47523877._000138.pool.root.1
[2025-12-01 09:40:58] -rw-r--r-- 1 boincer umatlas       530 Dec  1 09:39 boinc_task_state.xml
[2025-12-01 09:40:58] -rw------- 1 boincer umatlas        95 Dec  1 09:39 pilot_heartbeat.json
[2025-12-01 09:40:58] -rw------- 1 boincer umatlas      1051 Dec  1 09:39 memory_monitor_summary.json
[2025-12-01 09:40:58] -rw------- 1 boincer umatlas    460929 Dec  1 09:39 log.47523877._000138.job.log.tgz.1
[2025-12-01 09:40:58] -rw------- 1 boincer umatlas      7847 Dec  1 09:40 heartbeat.json
[2025-12-01 09:40:58] -rw-r--r-- 1 boincer umatlas      8192 Dec  1 09:40 boinc_mmap_file
[2025-12-01 09:40:58] -rw-r--r-- 1 boincer umatlas        28 Dec  1 09:40 wrapper_checkpoint.txt
[2025-12-01 09:40:58] -rw------- 1 boincer umatlas      4745 Dec  1 09:40 pilotlog.txt
[2025-12-01 09:40:58] -rw------- 1 boincer umatlas   1368729 Dec  1 09:40 log.47523877._000138.job.log.1
[2025-12-01 09:40:58] -rw------- 1 boincer umatlas       357 Dec  1 09:40 output.list
[2025-12-01 09:40:58] -rw-r--r-- 1 boincer umatlas       620 Dec  1 09:40 runtime_log
[2025-12-01 09:40:58] -rw------- 1 boincer umatlas   1853440 Dec  1 09:40 result.tar.gz
[2025-12-01 09:40:58] -rw-r--r-- 1 boincer umatlas      9344 Dec  1 09:40 runtime_log.err
[2025-12-01 09:40:58] -rw------- 1 boincer umatlas       662 Dec  1 09:40 Iu9NDmsKWj8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEpLKDmWsswxm.diag
[2025-12-01 09:40:58] -rw-r--r-- 1 boincer umatlas     21189 Dec  1 09:40 stderr.txt
[2025-12-01 09:40:58] HITS file was successfully produced:
[2025-12-01 09:40:58] -rw------- 1 boincer umatlas 324040117 Dec  1 09:39 shared/HITS.pool.root.1
[2025-12-01 09:40:58]  *** Contents of shared directory: ***
[2025-12-01 09:40:58] total 615920
[2025-12-01 09:40:58] -rw-r--r-- 2 boincer umatlas 304186420 Dec  1 06:56 ATLAS.root_0
[2025-12-01 09:40:58] -rw-r--r-- 2 boincer umatlas     15847 Dec  1 06:56 start_atlas.sh
[2025-12-01 09:40:58] -rw-r--r-- 2 boincer umatlas    589971 Dec  1 06:56 input.tar.gz
[2025-12-01 09:40:58] -rw------- 1 boincer umatlas 324040117 Dec  1 09:39 HITS.pool.root.1
[2025-12-01 09:40:58] -rw------- 1 boincer umatlas   1853440 Dec  1 09:40 result.tar.gz
09:40:59 (4001): run_atlas exited; CPU time 108670.809861
09:40:59 (4001): called boinc_finish(0)

</stderr_txt>
]]>

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