Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:37:39 (18539): wrapper (7.7.26015): starting
06:37:39 (18539): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 06:37:39] Arguments: --nthreads 8
[2025-12-01 06:37:39] Threads: 8
[2025-12-01 06:37:39] Checking for CVMFS
[2025-12-01 06:37:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 06:37:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 06:37:40] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 06:37:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 06:37:40] 2.11.2.0 2781 78759 89148 153516 0 69 11722062 20275201 1 130560 0 23051764 99.877 4507926 33908 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-01 06:37:40] CVMFS is ok
[2025-12-01 06:37:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 06:37:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 06:37:40] Further information can be found at the LHC@home message board.
[2025-12-01 06:37:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 06:37:40] Checking for apptainer binary...
[2025-12-01 06:37:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 06:37:40] Running /usr/bin/apptainer --version
[2025-12-01 06:37:40] apptainer version 1.3.2-1.el7
[2025-12-01 06:37:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 06:37:41] c-115-16.aglt2.org
[2025-12-01 06:37:41] apptainer works
[2025-12-01 06:37:41] Set ATHENA_PROC_NUMBER=8
[2025-12-01 06:37:41] Set ATHENA_CORE_NUMBER=8
[2025-12-01 06:37:41] Starting ATLAS job with PandaID=6901329602
[2025-12-01 06:37:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 16:44:14]  *** The last 200 lines of the pilot log: ***
[2025-12-01 16:44:14] 2025-12-01 21:43:38,881 | INFO     | time since job start (36339s) is within the limit (172800.0s)
[2025-12-01 16:44:14] 2025-12-01 21:43:39,268 | INFO     | monitor loop #2679: job 0:6901329602 is in state 'finished'
[2025-12-01 16:44:14] 2025-12-01 21:43:39,269 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 16:44:14] 2025-12-01 21:43:40,887 | INFO     | time since job start (36341s) is within the limit (172800.0s)
[2025-12-01 16:44:14] 2025-12-01 21:43:40,986 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-01 16:44:14] 2025-12-01 21:43:40,989 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1729.125
[2025-12-01 16:44:14] 2025-12-01 21:43:40,992 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6901329602/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 16:44:14] 2025-12-01 21:43:40,993 | INFO     | extracted standard info from prmon json
[2025-12-01 16:44:14] 2025-12-01 21:43:40,993 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 16:44:14] 2025-12-01 21:43:40,993 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 16:44:14] 2025-12-01 21:43:41,004 | INFO     | fitting pss+swap vs Time
[2025-12-01 16:44:14] 2025-12-01 21:43:41,005 | INFO     | sum of square deviations: 65317481469.93942
[2025-12-01 16:44:14] 2025-12-01 21:43:41,012 | INFO     | sum of deviations: 476435882798.9741
[2025-12-01 16:44:14] 2025-12-01 21:43:41,012 | INFO     | mean x: 1764607233.589916
[2025-12-01 16:44:14] 2025-12-01 21:43:41,012 | INFO     | mean y: 3655017.495798319
[2025-12-01 16:44:14] 2025-12-01 21:43:41,012 | INFO     | intersect: -12867664975.388288
[2025-12-01 16:44:14] 2025-12-01 21:43:41,013 | INFO     | chi2: 5.54071030083053
[2025-12-01 16:44:14] 2025-12-01 21:43:41,013 | INFO     | sum of square deviations: 63684730000.68477
[2025-12-01 16:44:14] 2025-12-01 21:43:41,020 | INFO     | sum of deviations: 691986999462.0294
[2025-12-01 16:44:14] 2025-12-01 21:43:41,020 | INFO     | mean x: 1764607081.0949152
[2025-12-01 16:44:14] 2025-12-01 21:43:41,020 | INFO     | mean y: 3675126.4101694915
[2025-12-01 16:44:14] 2025-12-01 21:43:41,021 | INFO     | intersect: -19170232955.844254
[2025-12-01 16:44:14] 2025-12-01 21:43:41,021 | INFO     | chi2: 3.1210448976559784
[2025-12-01 16:44:14] 2025-12-01 21:43:41,021 | INFO     | current chi2=3.1210448976559784 (change=43.67067166121018 %)
[2025-12-01 16:44:14] 2025-12-01 21:43:41,022 | INFO     | sum of square deviations: 62079420906.40008
[2025-12-01 16:44:14] 2025-12-01 21:43:41,028 | INFO     | sum of deviations: 795771306295.2004
[2025-12-01 16:44:14] 2025-12-01 21:43:41,029 | INFO     | mean x: 1764606928.6
[2025-12-01 16:44:14] 2025-12-01 21:43:41,029 | INFO     | mean y: 3684969.9623931623
[2025-12-01 16:44:14] 2025-12-01 21:43:41,029 | INFO     | intersect: -22616106583.615307
[2025-12-01 16:44:14] 2025-12-01 21:43:41,029 | INFO     | chi2: 2.466344972037402
[2025-12-01 16:44:14] 2025-12-01 21:43:41,030 | INFO     | current chi2=2.466344972037402 (change=20.976946730573488 %)
[2025-12-01 16:44:14] 2025-12-01 21:43:41,030 | INFO     | right removable region: 584
[2025-12-01 16:44:14] 2025-12-01 21:43:41,030 | INFO     | sum of square deviations: 63684515890.684814
[2025-12-01 16:44:14] 2025-12-01 21:43:41,037 | INFO     | sum of deviations: 265887016105.1831
[2025-12-01 16:44:14] 2025-12-01 21:43:41,037 | INFO     | mean x: 1764607386.0949152
[2025-12-01 16:44:14] 2025-12-01 21:43:41,037 | INFO     | mean y: 3674640.4610169493
[2025-12-01 16:44:14] 2025-12-01 21:43:41,037 | INFO     | intersect: -7363676526.835397
[2025-12-01 16:44:14] 2025-12-01 21:43:41,038 | INFO     | chi2: 3.1785593288737637
[2025-12-01 16:44:14] 2025-12-01 21:43:41,038 | INFO     | current chi2=3.1785593288737637 (change=42.6326381222763 %)
[2025-12-01 16:44:14] 2025-12-01 21:43:41,039 | INFO     | sum of square deviations: 62079028432.59829
[2025-12-01 16:44:14] 2025-12-01 21:43:41,045 | INFO     | sum of deviations: 229798345749.17065
[2025-12-01 16:44:14] 2025-12-01 21:43:41,046 | INFO     | mean x: 1764607538.5982907
[2025-12-01 16:44:14] 2025-12-01 21:43:41,046 | INFO     | mean y: 3678065.970940171
[2025-12-01 16:44:14] 2025-12-01 21:43:41,046 | INFO     | intersect: -6528381205.972643
[2025-12-01 16:44:14] 2025-12-01 21:43:41,046 | INFO     | chi2: 3.1437660967511496
[2025-12-01 16:44:14] 2025-12-01 21:43:41,047 | INFO     | current chi2=3.1437660967511496 (change=1.0946227055306257 %)
[2025-12-01 16:44:14] 2025-12-01 21:43:41,047 | INFO     | left removable region: 20
[2025-12-01 16:44:14] 2025-12-01 21:43:41,047 | INFO     | sum of square deviations: 55630968038.4024
[2025-12-01 16:44:14] 2025-12-01 21:43:41,054 | INFO     | sum of deviations: 512564112460.5442
[2025-12-01 16:44:14] 2025-12-01 21:43:41,054 | INFO     | mean x: 1764607508.108156
[2025-12-01 16:44:14] 2025-12-01 21:43:41,054 | INFO     | mean y: 3712902.859929078
[2025-12-01 16:44:14] 2025-12-01 21:43:41,054 | INFO     | intersect: -16254758109.37026
[2025-12-01 16:44:14] 2025-12-01 21:43:41,055 | INFO     | chi2: 0.03391187076397822
[2025-12-01 16:44:14] 2025-12-01 21:43:41,055 | INFO     | current memory leak: 9.21 B/s (using 564 data points, chi2=0.03)
[2025-12-01 16:44:14] 2025-12-01 21:43:41,055 | INFO     | could have reported an average CPU frequency of 2370 MHz (23 samples)
[2025-12-01 16:44:14] 2025-12-01 21:43:41,055 | INFO     | ..............................
[2025-12-01 16:44:14] 2025-12-01 21:43:41,056 | INFO     | . Timing measurements:
[2025-12-01 16:44:14] 2025-12-01 21:43:41,056 | INFO     | . get job = 0 s
[2025-12-01 16:44:14] 2025-12-01 21:43:41,056 | INFO     | . initial setup = 2 s
[2025-12-01 16:44:14] 2025-12-01 21:43:41,056 | INFO     | . payload setup = 15 s
[2025-12-01 16:44:14] 2025-12-01 21:43:41,056 | INFO     | . stage-in = 0 s
[2025-12-01 16:44:14] 2025-12-01 21:43:41,056 | INFO     | . payload execution = 36297 s
[2025-12-01 16:44:14] 2025-12-01 21:43:41,056 | INFO     | . stage-out = 3 s
[2025-12-01 16:44:14] 2025-12-01 21:43:41,056 | INFO     | . log creation = 0 s
[2025-12-01 16:44:14] 2025-12-01 21:43:41,056 | INFO     | ..............................
[2025-12-01 16:44:14] 2025-12-01 21:43:41,143 | INFO     | 
[2025-12-01 16:44:14] 2025-12-01 21:43:41,144 | INFO     | job summary report
[2025-12-01 16:44:14] 2025-12-01 21:43:41,144 | INFO     | --------------------------------------------------
[2025-12-01 16:44:14] 2025-12-01 21:43:41,144 | INFO     | PanDA job id: 6901329602
[2025-12-01 16:44:14] 2025-12-01 21:43:41,144 | INFO     | task id: 47531111
[2025-12-01 16:44:14] 2025-12-01 21:43:41,144 | INFO     | errors: (none)
[2025-12-01 16:44:14] 2025-12-01 21:43:41,144 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 16:44:14] 2025-12-01 21:43:41,144 | INFO     | pilot state: finished 
[2025-12-01 16:44:14] 2025-12-01 21:43:41,144 | INFO     | transexitcode: 0
[2025-12-01 16:44:14] 2025-12-01 21:43:41,145 | INFO     | exeerrorcode: 0
[2025-12-01 16:44:14] 2025-12-01 21:43:41,145 | INFO     | exeerrordiag: 
[2025-12-01 16:44:14] 2025-12-01 21:43:41,145 | INFO     | exitcode: 0
[2025-12-01 16:44:14] 2025-12-01 21:43:41,145 | INFO     | exitmsg: OK
[2025-12-01 16:44:14] 2025-12-01 21:43:41,145 | INFO     | cpuconsumptiontime: 278755 s
[2025-12-01 16:44:14] 2025-12-01 21:43:41,145 | INFO     | nevents: 1000
[2025-12-01 16:44:14] 2025-12-01 21:43:41,145 | INFO     | neventsw: 0
[2025-12-01 16:44:14] 2025-12-01 21:43:41,145 | INFO     | pid: 29369
[2025-12-01 16:44:14] 2025-12-01 21:43:41,145 | INFO     | pgrp: 29369
[2025-12-01 16:44:14] 2025-12-01 21:43:41,146 | INFO     | corecount: 8
[2025-12-01 16:44:14] 2025-12-01 21:43:41,146 | INFO     | event service: False
[2025-12-01 16:44:14] 2025-12-01 21:43:41,146 | INFO     | sizes: {0: 2284282, 1: 2284481, 6: 2284743, 12: 2284771, 36315: 2345946, 36316: 2345945, 36319: 2355179, 36325: 2355369}
[2025-12-01 16:44:14] 2025-12-01 21:43:41,146 | INFO     | --------------------------------------------------
[2025-12-01 16:44:14] 2025-12-01 21:43:41,146 | INFO     | 
[2025-12-01 16:44:14] 2025-12-01 21:43:41,146 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-01 16:44:14] 2025-12-01 21:43:41,173 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 16:44:14] 2025-12-01 21:43:41,174 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 16:44:14] 2025-12-01 21:43:41,174 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 16:44:14] 2025-12-01 21:43:41,174 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 16:44:14] 2025-12-01 21:43:41,175 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 16:44:14] 2025-12-01 21:43:41,175 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 16:44:14] 2025-12-01 21:43:41,175 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 16:44:14] 2025-12-01 21:43:41,175 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 16:44:14] 2025-12-01 21:43:41,175 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 16:44:14] 2025-12-01 21:43:41,176 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 16:44:14] 2025-12-01 21:43:41,176 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 16:44:14] 2025-12-01 21:43:41,176 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 16:44:14] 2025-12-01 21:43:41,176 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 16:44:14] 2025-12-01 21:43:41,176 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 16:44:14] 2025-12-01 21:43:41,176 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 16:44:14] 2025-12-01 21:43:41,177 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 16:44:14] 2025-12-01 21:43:41,177 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 16:44:14] 2025-12-01 21:43:41,177 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 16:44:14] 2025-12-01 21:43:41,177 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 16:44:14] 2025-12-01 21:43:41,177 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 16:44:14] 2025-12-01 21:43:41,178 | INFO     | job 6901329602 has completed (purged errors)
[2025-12-01 16:44:14] 2025-12-01 21:43:41,178 | INFO     | overall cleanup function is called
[2025-12-01 16:44:14] 2025-12-01 21:43:42,193 | INFO     | --- collectZombieJob: --- 10, [29369]
[2025-12-01 16:44:14] 2025-12-01 21:43:42,194 | INFO     | zombie collector waiting for pid 29369
[2025-12-01 16:44:14] 2025-12-01 21:43:42,203 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 16:44:14] 2025-12-01 21:43:42,204 | INFO     | collected zombie processes
[2025-12-01 16:44:14] 2025-12-01 21:43:42,204 | INFO     | will attempt to kill all subprocesses of pid=29369
[2025-12-01 16:44:14] 2025-12-01 21:43:42,289 | INFO     | process IDs to be killed: [29369] (in reverse order)
[2025-12-01 16:44:14] 2025-12-01 21:43:42,343 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 16:44:14] 2025-12-01 21:43:42,344 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 16:44:14] 2025-12-01 21:43:42,347 | INFO     | did not find any defunct processes belonging to 29369
[2025-12-01 16:44:14] 2025-12-01 21:43:42,350 | INFO     | did not find any defunct processes belonging to 29369
[2025-12-01 16:44:14] 2025-12-01 21:43:42,352 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 16:44:14] 2025-12-01 21:43:42,353 | INFO     | ready for new job
[2025-12-01 16:44:14] 2025-12-01 21:43:42,353 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 16:44:14] 2025-12-01 21:43:42,359 | INFO     | ***************************************
[2025-12-01 16:44:14] 2025-12-01 21:43:42,359 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 16:44:14] 2025-12-01 21:43:42,360 | INFO     | ***************************************
[2025-12-01 16:44:14] 2025-12-01 21:43:42,360 | INFO     | 
[2025-12-01 16:44:14] 2025-12-01 21:43:42,360 | INFO     | architecture information:
[2025-12-01 16:44:14] 2025-12-01 21:43:42,361 | INFO     | executing command: cat /etc/os-release
[2025-12-01 16:44:14] 2025-12-01 21:43:42,380 | INFO     | cat /etc/os-release:
[2025-12-01 16:44:14] NAME="CentOS Linux"
[2025-12-01 16:44:14] VERSION="7 (Core)"
[2025-12-01 16:44:14] ID="centos"
[2025-12-01 16:44:14] ID_LIKE="rhel fedora"
[2025-12-01 16:44:14] VERSION_ID="7"
[2025-12-01 16:44:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 16:44:14] ANSI_COLOR="0;31"
[2025-12-01 16:44:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 16:44:14] HOME_URL="https://www.centos.org/"
[2025-12-01 16:44:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 16:44:14] 
[2025-12-01 16:44:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 16:44:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 16:44:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 16:44:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 16:44:14] 
[2025-12-01 16:44:14] 2025-12-01 21:43:42,381 | INFO     | ***************************************
[2025-12-01 16:44:14] 2025-12-01 21:43:42,884 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-01 16:44:14] 2025-12-01 21:43:42,904 | INFO     | sufficient remaining disk space (17725128704 B)
[2025-12-01 16:44:14] 2025-12-01 21:43:42,904 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 16:44:14] 2025-12-01 21:43:42,905 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 16:44:14] 2025-12-01 21:43:42,905 | INFO     | update_server=False
[2025-12-01 16:44:14] 2025-12-01 21:43:42,905 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 16:44:14] 2025-12-01 21:43:42,905 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 16:44:14] 2025-12-01 21:43:42,906 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 16:44:14] 2025-12-01 21:43:42,906 | INFO     | aborting loop
[2025-12-01 16:44:14] 2025-12-01 21:43:43,280 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 16:44:14] 2025-12-01 21:43:43,695 | INFO     | all payload control threads have been joined
[2025-12-01 16:44:14] 2025-12-01 21:43:43,908 | INFO     | [job] job monitor thread has finished
[2025-12-01 16:44:14] 2025-12-01 21:43:43,911 | INFO     | [job] queue monitor thread has finished
[2025-12-01 16:44:14] 2025-12-01 21:43:43,911 | INFO     | [job] retrieve thread has finished
[2025-12-01 16:44:14] 2025-12-01 21:43:43,961 | INFO     | all data control threads have been joined
[2025-12-01 16:44:14] 2025-12-01 21:43:44,179 | INFO     | [payload] validate_post thread has finished
[2025-12-01 16:44:14] 2025-12-01 21:43:44,387 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 16:44:14] 2025-12-01 21:43:44,419 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 16:44:14] 2025-12-01 21:43:44,532 | INFO     | all job control threads have been joined
[2025-12-01 16:44:14] 2025-12-01 21:43:44,555 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 16:44:14] 2025-12-01 21:43:44,616 | INFO     | [data] copytool_in thread has finished
[2025-12-01 16:44:14] 2025-12-01 21:43:44,701 | INFO     | [payload] control thread has finished
[2025-12-01 16:44:14] 2025-12-01 21:43:44,737 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 16:44:14] 2025-12-01 21:43:44,882 | INFO     | [payload] failed_post thread has finished
[2025-12-01 16:44:14] 2025-12-01 21:43:44,966 | INFO     | [data] control thread has finished
[2025-12-01 16:44:14] 2025-12-01 21:43:45,286 | INFO     | [data] copytool_out thread has finished
[2025-12-01 16:44:14] 2025-12-01 21:43:45,403 | INFO     | [job] validate thread has finished
[2025-12-01 16:44:14] 2025-12-01 21:43:45,538 | INFO     | [job] control thread has finished
[2025-12-01 16:44:14] 2025-12-01 21:43:45,858 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 16:44:14] 2025-12-01 21:43:49,864 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 16:44:14] 2025-12-01 21:43:58,696 | INFO     | [monitor] cgroup control has ended
[2025-12-01 16:44:14] 2025-12-01 21:43:59,412 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140043384112960)>', '<ExcThread(monitor, started 140042475386624)>']
[2025-12-01 16:44:14] 2025-12-01 21:44:04,418 | INFO     | all workflow threads have been joined
[2025-12-01 16:44:14] 2025-12-01 21:44:04,419 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 16:44:14] 2025-12-01 21:44:04,419 | INFO     | traces error code: 0
[2025-12-01 16:44:14] 2025-12-01 21:44:04,420 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 16:44:14] 2025-12-01 21:44:14,089 | INFO     | PID=22217 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 16:44:14] 2025-12-01 21:44:14,089 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 16:44:14] 2025-12-01 21:44:14,089 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 16:44:14] 2025-12-01 21:44:14,090 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 16:44:14] 2025-12-01 21:44:14,090 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 16:44:14] 2025-12-01 21:44:14,090 | INFO     | [monitor] control thread has ended
[2025-12-01 16:44:14] 2025-12-01 21:44:14,211 [wrapper] ==== pilot stdout END ====
[2025-12-01 16:44:14] 2025-12-01 21:44:14,216 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 16:44:14] 2025-12-01 21:44:14,221 [wrapper] pilotpid: 22217
[2025-12-01 16:44:14] 2025-12-01 21:44:14,225 [wrapper] Pilot exit status: 0
[2025-12-01 16:44:14] 2025-12-01 21:44:14,241 [wrapper] pandaids: 6901329602
[2025-12-01 16:44:14] 2025-12-01 21:44:14,284 [wrapper] cleanup supervisor_pilot 29402 22218
[2025-12-01 16:44:14] 2025-12-01 21:44:14,289 [wrapper] Test setup, not cleaning
[2025-12-01 16:44:14] 2025-12-01 21:44:14,293 [wrapper] apfmon messages muted
[2025-12-01 16:44:14] 2025-12-01 21:44:14,298 [wrapper] ==== wrapper stdout END ====
[2025-12-01 16:44:14] 2025-12-01 21:44:14,302 [wrapper] ==== wrapper stderr END ====
[2025-12-01 16:44:14]  *** Error codes and diagnostics ***
[2025-12-01 16:44:14]     "exeErrorCode": 0,
[2025-12-01 16:44:14]     "exeErrorDiag": "",
[2025-12-01 16:44:14]     "pilotErrorCode": 0,
[2025-12-01 16:44:14]     "pilotErrorDiag": "",
[2025-12-01 16:44:14]  *** Listing of results directory ***
[2025-12-01 16:44:14] total 1096212
[2025-12-01 16:44:14] -rw-r--r-- 1 boincer umatlas    576529 Nov 29 04:19 pilot3.tar.gz
[2025-12-01 16:44:14] -rwx------ 1 boincer umatlas     36292 Nov 29 04:20 runpilot2-wrapper.sh
[2025-12-01 16:44:14] -rw-r--r-- 1 boincer umatlas      5112 Nov 29 04:23 queuedata.json
[2025-12-01 16:44:14] -rw-r--r-- 1 boincer umatlas       100 Dec  1 06:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 16:44:14] -rwxr-xr-x 1 boincer umatlas      7986 Dec  1 06:37 run_atlas
[2025-12-01 16:44:14] -rw-r--r-- 1 boincer umatlas       105 Dec  1 06:37 job.xml
[2025-12-01 16:44:14] -rw-r--r-- 2 boincer umatlas 379269213 Dec  1 06:37 EVNT.47531104._000110.pool.root.1
[2025-12-01 16:44:14] -rw-r--r-- 2 boincer umatlas     15847 Dec  1 06:37 start_atlas.sh
[2025-12-01 16:44:14] drwxrwx--x 2 boincer umatlas      4096 Dec  1 06:37 shared
[2025-12-01 16:44:14] -rw-r--r-- 2 boincer umatlas    590123 Dec  1 06:37 input.tar.gz
[2025-12-01 16:44:14] -rw-r--r-- 1 boincer umatlas         0 Dec  1 06:37 boinc_lockfile
[2025-12-01 16:44:14] -rw-r--r-- 1 boincer umatlas      2880 Dec  1 06:37 pandaJob.out
[2025-12-01 16:44:14] -rw------- 1 boincer umatlas        57 Dec  1 06:37 setup.sh.local
[2025-12-01 16:44:14] -rw------- 1 boincer umatlas    992117 Dec  1 06:37 agis_schedconf.cvmfs.json
[2025-12-01 16:44:14] drwx------ 5 boincer umatlas      4096 Dec  1 06:37 pilot3
[2025-12-01 16:44:14] -rw-r--r-- 1 boincer umatlas       533 Dec  1 16:31 boinc_task_state.xml
[2025-12-01 16:44:14] -rw-r--r-- 1 boincer umatlas      5913 Dec  1 16:40 init_data.xml
[2025-12-01 16:44:14] -rw------- 1 boincer umatlas 725322155 Dec  1 16:43 HITS.47531111._001090.pool.root.1
[2025-12-01 16:44:14] -rw------- 1 boincer umatlas      1060 Dec  1 16:43 memory_monitor_summary.json
[2025-12-01 16:44:14] -rw------- 1 boincer umatlas        95 Dec  1 16:43 pilot_heartbeat.json
[2025-12-01 16:44:14] -rw------- 1 boincer umatlas   1516240 Dec  1 16:43 agis_ddmendpoints.agis.ALL.json
[2025-12-01 16:44:14] -rw------- 1 boincer umatlas   1970592 Dec  1 16:43 log.47531111._001090.job.log.tgz.1
[2025-12-01 16:44:14] -rw------- 1 boincer umatlas     28313 Dec  1 16:43 heartbeat.json
[2025-12-01 16:44:14] -rw-r--r-- 1 boincer umatlas        29 Dec  1 16:44 wrapper_checkpoint.txt
[2025-12-01 16:44:14] -rw-r--r-- 1 boincer umatlas      8192 Dec  1 16:44 boinc_mmap_file
[2025-12-01 16:44:14] -rw------- 1 boincer umatlas       745 Dec  1 16:44 pilotlog.txt
[2025-12-01 16:44:14] -rw------- 1 boincer umatlas   5013825 Dec  1 16:44 log.47531111._001090.job.log.1
[2025-12-01 16:44:14] -rw------- 1 boincer umatlas       353 Dec  1 16:44 output.list
[2025-12-01 16:44:14] -rw-r--r-- 1 boincer umatlas       620 Dec  1 16:44 runtime_log
[2025-12-01 16:44:14] -rw------- 1 boincer umatlas   7024640 Dec  1 16:44 result.tar.gz
[2025-12-01 16:44:14] -rw-r--r-- 1 boincer umatlas      9343 Dec  1 16:44 runtime_log.err
[2025-12-01 16:44:14] -rw------- 1 boincer umatlas       668 Dec  1 16:44 bjKKDmuIWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmM5OKDmK1S2im.diag
[2025-12-01 16:44:14] -rw-r--r-- 1 boincer umatlas     21306 Dec  1 16:44 stderr.txt
[2025-12-01 16:44:14] HITS file was successfully produced:
[2025-12-01 16:44:14] -rw------- 1 boincer umatlas 725322155 Dec  1 16:43 shared/HITS.pool.root.1
[2025-12-01 16:44:14]  *** Contents of shared directory: ***
[2025-12-01 16:44:14] total 1086172
[2025-12-01 16:44:14] -rw-r--r-- 2 boincer umatlas 379269213 Dec  1 06:37 ATLAS.root_0
[2025-12-01 16:44:14] -rw-r--r-- 2 boincer umatlas     15847 Dec  1 06:37 start_atlas.sh
[2025-12-01 16:44:14] -rw-r--r-- 2 boincer umatlas    590123 Dec  1 06:37 input.tar.gz
[2025-12-01 16:44:14] -rw------- 1 boincer umatlas 725322155 Dec  1 16:43 HITS.pool.root.1
[2025-12-01 16:44:14] -rw------- 1 boincer umatlas   7024640 Dec  1 16:44 result.tar.gz
16:44:16 (18539): run_atlas exited; CPU time 276645.560990
16:44:16 (18539): called boinc_finish(0)

</stderr_txt>
]]>

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