Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:06:45 (13621): wrapper (7.7.26015): starting
06:06:45 (13621): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 06:06:45] Arguments: --nthreads 8
[2025-12-01 06:06:45] Threads: 8
[2025-12-01 06:06:45] Checking for CVMFS
[2025-12-01 06:06:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 06:06:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 06:06:45] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 06:06:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 06:06:45] 2.11.2.0 7040 124801 140804 153514 2 101 9324658 18432000 1831 130560 0 91242909 99.976 5129040 31427 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-01 06:06:45] CVMFS is ok
[2025-12-01 06:06:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 06:06:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 06:06:45] Further information can be found at the LHC@home message board.
[2025-12-01 06:06:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 06:06:45] Checking for apptainer binary...
[2025-12-01 06:06:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 06:06:46] Running /usr/bin/apptainer --version
[2025-12-01 06:06:46] apptainer version 1.3.2-1.el7
[2025-12-01 06:06:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 06:06:46] c-206-7.aglt2.org
[2025-12-01 06:06:46] apptainer works
[2025-12-01 06:06:46] Set ATHENA_PROC_NUMBER=8
[2025-12-01 06:06:46] Set ATHENA_CORE_NUMBER=8
[2025-12-01 06:06:46] Starting ATLAS job with PandaID=6901292144
[2025-12-01 06:06:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:12:58 (4188): wrapper (7.7.26015): starting
07:12:58 (4188): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 07:12:58] Arguments: --nthreads 8
[2025-12-01 07:12:58] Threads: 8
[2025-12-01 07:12:58] This job has been restarted, cleaning up previous attempt
[2025-12-01 07:12:58] Checking for CVMFS
[2025-12-01 07:12:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 07:12:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 07:12:58] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 07:12:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 07:12:59] 2.11.2.0 7040 124867 140032 153516 0 65 9339373 18432001 1 130560 0 91344806 99.976 5131715 31431 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-01 07:12:59] CVMFS is ok
[2025-12-01 07:12:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 07:12:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 07:12:59] Further information can be found at the LHC@home message board.
[2025-12-01 07:12:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 07:12:59] Checking for apptainer binary...
[2025-12-01 07:12:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 07:12:59] Running /usr/bin/apptainer --version
[2025-12-01 07:12:59] apptainer version 1.3.2-1.el7
[2025-12-01 07:12:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 07:13:00] c-206-7.aglt2.org
[2025-12-01 07:13:00] apptainer works
[2025-12-01 07:13:00] Set ATHENA_PROC_NUMBER=8
[2025-12-01 07:13:00] Set ATHENA_CORE_NUMBER=8
[2025-12-01 07:13:00] Starting ATLAS job with PandaID=6901292144
[2025-12-01 07:13:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 23:45:16]  *** The last 200 lines of the pilot log: ***
[2025-12-01 23:45:16] 2025-12-02 04:44:41,178 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 23:45:16] 2025-12-02 04:44:42,800 | INFO     | time since job start (59490s) is within the limit (172800.0s)
[2025-12-01 23:45:16] 2025-12-02 04:44:43,336 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-01 23:45:16] 2025-12-02 04:44:43,340 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2222.7083333333335
[2025-12-01 23:45:16] 2025-12-02 04:44:43,343 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6901292144/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 23:45:16] 2025-12-02 04:44:43,343 | INFO     | extracted standard info from prmon json
[2025-12-01 23:45:16] 2025-12-02 04:44:43,344 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 23:45:16] 2025-12-02 04:44:43,344 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 23:45:16] 2025-12-02 04:44:43,358 | INFO     | fitting pss+swap vs Time
[2025-12-01 23:45:16] 2025-12-02 04:44:43,359 | INFO     | sum of square deviations: 287403297692.3038
[2025-12-01 23:45:16] 2025-12-02 04:44:43,377 | INFO     | sum of deviations: 1876454314779.758
[2025-12-01 23:45:16] 2025-12-02 04:44:43,377 | INFO     | mean x: 1764620930.7158973
[2025-12-01 23:45:16] 2025-12-02 04:44:43,377 | INFO     | mean y: 3375810.97025641
[2025-12-01 23:45:16] 2025-12-02 04:44:43,377 | INFO     | intersect: -11517823096.557755
[2025-12-01 23:45:16] 2025-12-02 04:44:43,378 | INFO     | chi2: 5.445022438208136
[2025-12-01 23:45:16] 2025-12-02 04:44:43,379 | INFO     | sum of square deviations: 283004553682.2278
[2025-12-01 23:45:16] 2025-12-02 04:44:43,397 | INFO     | sum of deviations: 2183903738940.5188
[2025-12-01 23:45:16] 2025-12-02 04:44:43,397 | INFO     | mean x: 1764620778.2195876
[2025-12-01 23:45:16] 2025-12-02 04:44:43,397 | INFO     | mean y: 3386461.8989690724
[2025-12-01 23:45:16] 2025-12-02 04:44:43,397 | INFO     | intersect: -13613927695.148445
[2025-12-01 23:45:16] 2025-12-02 04:44:43,398 | INFO     | chi2: 3.2439460225524805
[2025-12-01 23:45:16] 2025-12-02 04:44:43,399 | INFO     | current chi2=3.2439460225524805 (change=40.42364270550173 %)
[2025-12-01 23:45:16] 2025-12-02 04:44:43,400 | INFO     | sum of square deviations: 278650926797.12537
[2025-12-01 23:45:16] 2025-12-02 04:44:43,417 | INFO     | sum of deviations: 2321301369457.914
[2025-12-01 23:45:16] 2025-12-02 04:44:43,417 | INFO     | mean x: 1764620625.723316
[2025-12-01 23:45:16] 2025-12-02 04:44:43,417 | INFO     | mean y: 3391269.2393782386
[2025-12-01 23:45:16] 2025-12-02 04:44:43,418 | INFO     | intersect: -14696779737.360239
[2025-12-01 23:45:16] 2025-12-02 04:44:43,418 | INFO     | chi2: 2.674574006888893
[2025-12-01 23:45:16] 2025-12-02 04:44:43,419 | INFO     | current chi2=2.674574006888893 (change=17.551833837715357 %)
[2025-12-01 23:45:16] 2025-12-02 04:44:43,419 | INFO     | right removable region: 964
[2025-12-01 23:45:16] 2025-12-02 04:44:43,420 | INFO     | sum of square deviations: 283004187133.66595
[2025-12-01 23:45:16] 2025-12-02 04:44:43,438 | INFO     | sum of deviations: 1556153278380.515
[2025-12-01 23:45:16] 2025-12-02 04:44:43,438 | INFO     | mean x: 1764621083.2185566
[2025-12-01 23:45:16] 2025-12-02 04:44:43,438 | INFO     | mean y: 3386900.0824742266
[2025-12-01 23:45:16] 2025-12-02 04:44:43,438 | INFO     | intersect: -9699723543.484768
[2025-12-01 23:45:16] 2025-12-02 04:44:43,439 | INFO     | chi2: 3.0513096224721097
[2025-12-01 23:45:16] 2025-12-02 04:44:43,439 | INFO     | current chi2=3.0513096224721097 (change=43.961486713795004 %)
[2025-12-01 23:45:16] 2025-12-02 04:44:43,440 | INFO     | sum of square deviations: 278650252992.455
[2025-12-01 23:45:16] 2025-12-02 04:44:43,457 | INFO     | sum of deviations: 1474437745700.0781
[2025-12-01 23:45:16] 2025-12-02 04:44:43,458 | INFO     | mean x: 1764621235.7202072
[2025-12-01 23:45:16] 2025-12-02 04:44:43,458 | INFO     | mean y: 3389761.6113989637
[2025-12-01 23:45:16] 2025-12-02 04:44:43,458 | INFO     | intersect: -9333849766.680857
[2025-12-01 23:45:16] 2025-12-02 04:44:43,459 | INFO     | chi2: 2.983152601427082
[2025-12-01 23:45:16] 2025-12-02 04:44:43,459 | INFO     | current chi2=2.983152601427082 (change=2.233697312887189 %)
[2025-12-01 23:45:16] 2025-12-02 04:44:43,459 | INFO     | left removable region: 20
[2025-12-01 23:45:16] 2025-12-02 04:44:43,460 | INFO     | sum of square deviations: 260851656756.7287
[2025-12-01 23:45:16] 2025-12-02 04:44:43,477 | INFO     | sum of deviations: 1806588825484.9146
[2025-12-01 23:45:16] 2025-12-02 04:44:43,477 | INFO     | mean x: 1764621205.2330508
[2025-12-01 23:45:16] 2025-12-02 04:44:43,477 | INFO     | mean y: 3409744.4322033897
[2025-12-01 23:45:16] 2025-12-02 04:44:43,477 | INFO     | intersect: -12217884880.354641
[2025-12-01 23:45:16] 2025-12-02 04:44:43,478 | INFO     | chi2: 0.15813668707622344
[2025-12-01 23:45:16] 2025-12-02 04:44:43,479 | INFO     | current memory leak: 6.93 B/s (using 944 data points, chi2=0.16)
[2025-12-01 23:45:16] 2025-12-02 04:44:43,479 | INFO     | could have reported an average CPU frequency of 2566 MHz (36 samples)
[2025-12-01 23:45:16] 2025-12-02 04:44:43,479 | INFO     | ..............................
[2025-12-01 23:45:16] 2025-12-02 04:44:43,480 | INFO     | . Timing measurements:
[2025-12-01 23:45:16] 2025-12-02 04:44:43,480 | INFO     | . get job = 0 s
[2025-12-01 23:45:16] 2025-12-02 04:44:43,480 | INFO     | . initial setup = 1 s
[2025-12-01 23:45:16] 2025-12-02 04:44:43,480 | INFO     | . payload setup = 11 s
[2025-12-01 23:45:16] 2025-12-02 04:44:43,480 | INFO     | . stage-in = 0 s
[2025-12-01 23:45:16] 2025-12-02 04:44:43,480 | INFO     | . payload execution = 59450 s
[2025-12-01 23:45:16] 2025-12-02 04:44:43,480 | INFO     | . stage-out = 3 s
[2025-12-01 23:45:16] 2025-12-02 04:44:43,480 | INFO     | . log creation = 0 s
[2025-12-01 23:45:16] 2025-12-02 04:44:43,480 | INFO     | ..............................
[2025-12-01 23:45:16] 2025-12-02 04:44:43,564 | INFO     | 
[2025-12-01 23:45:16] 2025-12-02 04:44:43,564 | INFO     | job summary report
[2025-12-01 23:45:16] 2025-12-02 04:44:43,564 | INFO     | --------------------------------------------------
[2025-12-01 23:45:16] 2025-12-02 04:44:43,564 | INFO     | PanDA job id: 6901292144
[2025-12-01 23:45:16] 2025-12-02 04:44:43,565 | INFO     | task id: 47531058
[2025-12-01 23:45:16] 2025-12-02 04:44:43,565 | INFO     | errors: (none)
[2025-12-01 23:45:16] 2025-12-02 04:44:43,565 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 23:45:16] 2025-12-02 04:44:43,565 | INFO     | pilot state: finished 
[2025-12-01 23:45:16] 2025-12-02 04:44:43,565 | INFO     | transexitcode: 0
[2025-12-01 23:45:16] 2025-12-02 04:44:43,565 | INFO     | exeerrorcode: 0
[2025-12-01 23:45:16] 2025-12-02 04:44:43,565 | INFO     | exeerrordiag: 
[2025-12-01 23:45:16] 2025-12-02 04:44:43,565 | INFO     | exitcode: 0
[2025-12-01 23:45:16] 2025-12-02 04:44:43,565 | INFO     | exitmsg: OK
[2025-12-01 23:45:16] 2025-12-02 04:44:43,565 | INFO     | cpuconsumptiontime: 458158 s
[2025-12-01 23:45:16] 2025-12-02 04:44:43,566 | INFO     | nevents: 1000
[2025-12-01 23:45:16] 2025-12-02 04:44:43,566 | INFO     | neventsw: 0
[2025-12-01 23:45:16] 2025-12-02 04:44:43,566 | INFO     | pid: 4340
[2025-12-01 23:45:16] 2025-12-02 04:44:43,566 | INFO     | pgrp: 4340
[2025-12-01 23:45:16] 2025-12-02 04:44:43,566 | INFO     | corecount: 8
[2025-12-01 23:45:16] 2025-12-02 04:44:43,566 | INFO     | event service: False
[2025-12-01 23:45:16] 2025-12-02 04:44:43,566 | INFO     | sizes: {0: 2284282, 1: 2284481, 5: 2284743, 12: 2284799, 59465: 2356141, 59469: 2365135, 59472: 2365319, 59476: 2365565}
[2025-12-01 23:45:16] 2025-12-02 04:44:43,566 | INFO     | --------------------------------------------------
[2025-12-01 23:45:16] 2025-12-02 04:44:43,566 | INFO     | 
[2025-12-01 23:45:16] 2025-12-02 04:44:43,567 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-01 23:45:16] 2025-12-02 04:44:43,584 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 23:45:16] 2025-12-02 04:44:43,584 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 23:45:16] 2025-12-02 04:44:43,584 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 23:45:16] 2025-12-02 04:44:43,584 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 23:45:16] 2025-12-02 04:44:43,585 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 23:45:16] 2025-12-02 04:44:43,585 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 23:45:16] 2025-12-02 04:44:43,585 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 23:45:16] 2025-12-02 04:44:43,585 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 23:45:16] 2025-12-02 04:44:43,585 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 23:45:16] 2025-12-02 04:44:43,585 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 23:45:16] 2025-12-02 04:44:43,585 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 23:45:16] 2025-12-02 04:44:43,585 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 23:45:16] 2025-12-02 04:44:43,585 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 23:45:16] 2025-12-02 04:44:43,586 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 23:45:16] 2025-12-02 04:44:43,586 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 23:45:16] 2025-12-02 04:44:43,586 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 23:45:16] 2025-12-02 04:44:43,586 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 23:45:16] 2025-12-02 04:44:43,586 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 23:45:16] 2025-12-02 04:44:43,586 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 23:45:16] 2025-12-02 04:44:43,586 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 23:45:16] 2025-12-02 04:44:43,586 | INFO     | job 6901292144 has completed (purged errors)
[2025-12-01 23:45:16] 2025-12-02 04:44:43,587 | INFO     | overall cleanup function is called
[2025-12-01 23:45:16] 2025-12-02 04:44:44,600 | INFO     | --- collectZombieJob: --- 10, [4340]
[2025-12-01 23:45:16] 2025-12-02 04:44:44,600 | INFO     | zombie collector waiting for pid 4340
[2025-12-01 23:45:16] 2025-12-02 04:44:44,600 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 23:45:16] 2025-12-02 04:44:44,600 | INFO     | collected zombie processes
[2025-12-01 23:45:16] 2025-12-02 04:44:44,600 | INFO     | will attempt to kill all subprocesses of pid=4340
[2025-12-01 23:45:16] 2025-12-02 04:44:44,713 | INFO     | process IDs to be killed: [4340] (in reverse order)
[2025-12-01 23:45:16] 2025-12-02 04:44:44,758 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 23:45:16] 2025-12-02 04:44:44,758 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 23:45:16] 2025-12-02 04:44:44,761 | INFO     | did not find any defunct processes belonging to 4340
[2025-12-01 23:45:16] 2025-12-02 04:44:44,764 | INFO     | did not find any defunct processes belonging to 4340
[2025-12-01 23:45:16] 2025-12-02 04:44:44,765 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 23:45:16] 2025-12-02 04:44:44,766 | INFO     | ready for new job
[2025-12-01 23:45:16] 2025-12-02 04:44:44,766 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 23:45:16] 2025-12-02 04:44:44,769 | INFO     | ***************************************
[2025-12-01 23:45:16] 2025-12-02 04:44:44,769 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 23:45:16] 2025-12-02 04:44:44,769 | INFO     | ***************************************
[2025-12-01 23:45:16] 2025-12-02 04:44:44,769 | INFO     | 
[2025-12-01 23:45:16] 2025-12-02 04:44:44,770 | INFO     | architecture information:
[2025-12-01 23:45:16] 2025-12-02 04:44:44,771 | INFO     | executing command: cat /etc/os-release
[2025-12-01 23:45:16] 2025-12-02 04:44:44,781 | INFO     | cat /etc/os-release:
[2025-12-01 23:45:16] NAME="CentOS Linux"
[2025-12-01 23:45:16] VERSION="7 (Core)"
[2025-12-01 23:45:16] ID="centos"
[2025-12-01 23:45:16] ID_LIKE="rhel fedora"
[2025-12-01 23:45:16] VERSION_ID="7"
[2025-12-01 23:45:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 23:45:16] ANSI_COLOR="0;31"
[2025-12-01 23:45:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 23:45:16] HOME_URL="https://www.centos.org/"
[2025-12-01 23:45:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 23:45:16] 
[2025-12-01 23:45:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 23:45:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 23:45:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 23:45:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 23:45:16] 
[2025-12-01 23:45:16] 2025-12-02 04:44:44,782 | INFO     | ***************************************
[2025-12-01 23:45:16] 2025-12-02 04:44:45,285 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-01 23:45:16] 2025-12-02 04:44:45,295 | INFO     | sufficient remaining disk space (25301090304 B)
[2025-12-01 23:45:16] 2025-12-02 04:44:45,296 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 23:45:16] 2025-12-02 04:44:45,296 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 23:45:16] 2025-12-02 04:44:45,296 | INFO     | update_server=False
[2025-12-01 23:45:16] 2025-12-02 04:44:45,296 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 23:45:16] 2025-12-02 04:44:45,296 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 23:45:16] 2025-12-02 04:44:45,297 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 23:45:16] 2025-12-02 04:44:45,297 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 23:45:16] 2025-12-02 04:44:45,297 | INFO     | aborting loop
[2025-12-01 23:45:16] 2025-12-02 04:44:45,675 | INFO     | all job control threads have been joined
[2025-12-01 23:45:16] 2025-12-02 04:44:45,741 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 23:45:16] 2025-12-02 04:44:45,861 | INFO     | all data control threads have been joined
[2025-12-01 23:45:16] 2025-12-02 04:44:46,301 | INFO     | [job] retrieve thread has finished
[2025-12-01 23:45:16] 2025-12-02 04:44:46,302 | INFO     | [job] queue monitor thread has finished
[2025-12-01 23:45:16] 2025-12-02 04:44:46,303 | INFO     | [job] job monitor thread has finished
[2025-12-01 23:45:16] 2025-12-02 04:44:46,636 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 23:45:16] 2025-12-02 04:44:46,640 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 23:45:16] 2025-12-02 04:44:46,677 | INFO     | [job] control thread has finished
[2025-12-01 23:45:16] 2025-12-02 04:44:46,794 | INFO     | all payload control threads have been joined
[2025-12-01 23:45:16] 2025-12-02 04:44:46,867 | INFO     | [data] control thread has finished
[2025-12-01 23:45:16] 2025-12-02 04:44:46,990 | INFO     | [data] copytool_in thread has finished
[2025-12-01 23:45:16] 2025-12-02 04:44:47,043 | INFO     | [payload] validate_post thread has finished
[2025-12-01 23:45:16] 2025-12-02 04:44:47,302 | INFO     | [data] copytool_out thread has finished
[2025-12-01 23:45:16] 2025-12-02 04:44:47,344 | INFO     | [payload] failed_post thread has finished
[2025-12-01 23:45:16] 2025-12-02 04:44:47,544 | INFO     | [job] validate thread has finished
[2025-12-01 23:45:16] 2025-12-02 04:44:47,640 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 23:45:16] 2025-12-02 04:44:47,796 | INFO     | [payload] control thread has finished
[2025-12-01 23:45:16] 2025-12-02 04:44:49,746 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 23:45:16] 2025-12-02 04:44:50,318 | INFO     | [monitor] cgroup control has ended
[2025-12-01 23:45:16] 2025-12-02 04:44:55,477 | INFO     | job.realtimelogging is not enabled
[2025-12-01 23:45:16] 2025-12-02 04:44:56,482 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 23:45:16] 2025-12-02 04:44:56,609 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140547801724736)>', '<ExcThread(monitor, started 140547588163328)>']
[2025-12-01 23:45:16] 2025-12-02 04:45:01,634 | INFO     | all workflow threads have been joined
[2025-12-01 23:45:16] 2025-12-02 04:45:01,635 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 23:45:16] 2025-12-02 04:45:01,635 | INFO     | traces error code: 0
[2025-12-01 23:45:16] 2025-12-02 04:45:01,635 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 23:45:16] 2025-12-02 04:45:16,015 | INFO     | PID=15358 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 23:45:16] 2025-12-02 04:45:16,015 | INFO     | .. there are 3 such processes running
[2025-12-01 23:45:16] 2025-12-02 04:45:16,015 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 23:45:16] 2025-12-02 04:45:16,015 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 23:45:16] 2025-12-02 04:45:16,016 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 23:45:16] 2025-12-02 04:45:16,016 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 23:45:16] 2025-12-02 04:45:16,016 | INFO     | [monitor] control thread has ended
[2025-12-01 23:45:16] 2025-12-02 04:45:16,099 [wrapper] ==== pilot stdout END ====
[2025-12-01 23:45:16] 2025-12-02 04:45:16,101 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 23:45:16] 2025-12-02 04:45:16,104 [wrapper] pilotpid: 15358
[2025-12-01 23:45:16] 2025-12-02 04:45:16,107 [wrapper] Pilot exit status: 0
[2025-12-01 23:45:16] 2025-12-02 04:45:16,116 [wrapper] pandaids: 6901292144 6901292144
[2025-12-01 23:45:16] 2025-12-02 04:45:16,149 [wrapper] cleanup supervisor_pilot 15873 15359
[2025-12-01 23:45:16] 2025-12-02 04:45:16,152 [wrapper] Test setup, not cleaning
[2025-12-01 23:45:16] 2025-12-02 04:45:16,154 [wrapper] apfmon messages muted
[2025-12-01 23:45:16] 2025-12-02 04:45:16,157 [wrapper] ==== wrapper stdout END ====
[2025-12-01 23:45:16] 2025-12-02 04:45:16,159 [wrapper] ==== wrapper stderr END ====
[2025-12-01 23:45:16]  *** Error codes and diagnostics ***
[2025-12-01 23:45:16]     "exeErrorCode": 0,
[2025-12-01 23:45:16]     "exeErrorDiag": "",
[2025-12-01 23:45:16]     "pilotErrorCode": 0,
[2025-12-01 23:45:16]     "pilotErrorDiag": "",
[2025-12-01 23:45:16]  *** Listing of results directory ***
[2025-12-01 23:45:16] total 1444388
[2025-12-01 23:45:16] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-12-01 23:45:16] -rw-r--r-- 1 boincer umatlas    576529 Nov 29 04:19 pilot3.tar.gz
[2025-12-01 23:45:16] -rwx------ 1 boincer umatlas     36292 Nov 29 04:20 runpilot2-wrapper.sh
[2025-12-01 23:45:16] -rw-r--r-- 1 boincer umatlas      5112 Nov 29 04:22 queuedata.json
[2025-12-01 23:45:16] -rw-r--r-- 1 boincer umatlas       100 Dec  1 06:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 23:45:16] -rwxr-xr-x 1 boincer umatlas      7986 Dec  1 06:06 run_atlas
[2025-12-01 23:45:16] -rw-r--r-- 1 boincer umatlas       105 Dec  1 06:06 job.xml
[2025-12-01 23:45:16] -rw-r--r-- 3 boincer umatlas 375766301 Dec  1 06:06 EVNT.47531050._000609.pool.root.1
[2025-12-01 23:45:16] -rw-r--r-- 3 boincer umatlas 375766301 Dec  1 06:06 ATLAS.root_0
[2025-12-01 23:45:16] -rw-r--r-- 2 boincer umatlas     15847 Dec  1 06:06 start_atlas.sh
[2025-12-01 23:45:16] drwxrwx--x 2 boincer umatlas      4096 Dec  1 06:06 shared
[2025-12-01 23:45:16] -rw-r--r-- 2 boincer umatlas    590120 Dec  1 06:06 input.tar.gz
[2025-12-01 23:45:16] -rw-r--r-- 1 boincer umatlas         0 Dec  1 06:06 boinc_lockfile
[2025-12-01 23:45:16] -rw-r--r-- 1 boincer umatlas      2880 Dec  1 07:13 pandaJob.out
[2025-12-01 23:45:16] -rw------- 1 boincer umatlas        57 Dec  1 07:13 setup.sh.local
[2025-12-01 23:45:16] -rw------- 1 boincer umatlas    992117 Dec  1 07:13 agis_schedconf.cvmfs.json
[2025-12-01 23:45:16] -rw-r--r-- 1 boincer umatlas       532 Dec  1 23:32 boinc_task_state.xml
[2025-12-01 23:45:16] -rw-r--r-- 1 boincer umatlas      5952 Dec  1 23:39 init_data.xml
[2025-12-01 23:45:16] -rw------- 1 boincer umatlas 702553789 Dec  1 23:44 HITS.47531058._002246.pool.root.1
[2025-12-01 23:45:16] -rw------- 1 boincer umatlas        96 Dec  1 23:44 pilot_heartbeat.json
[2025-12-01 23:45:16] -rw------- 1 boincer umatlas      1062 Dec  1 23:44 memory_monitor_summary.json
[2025-12-01 23:45:16] -rw------- 1 boincer umatlas   1516240 Dec  1 23:44 agis_ddmendpoints.agis.ALL.json
[2025-12-01 23:45:16] -rw------- 1 boincer umatlas   2260736 Dec  1 23:44 log.47531058._002246.job.log.tgz.1
[2025-12-01 23:45:16] -rw------- 1 boincer umatlas     28261 Dec  1 23:44 heartbeat.json
[2025-12-01 23:45:16] -rw-r--r-- 1 boincer umatlas      8192 Dec  1 23:45 boinc_mmap_file
[2025-12-01 23:45:16] -rw-r--r-- 1 boincer umatlas        29 Dec  1 23:45 wrapper_checkpoint.txt
[2025-12-01 23:45:16] -rw------- 1 boincer umatlas       820 Dec  1 23:45 pilotlog.txt
[2025-12-01 23:45:16] -rw------- 1 boincer umatlas   8244171 Dec  1 23:45 log.47531058._002246.job.log.1
[2025-12-01 23:45:16] -rw------- 1 boincer umatlas       353 Dec  1 23:45 output.list
[2025-12-01 23:45:16] -rw-r--r-- 1 boincer umatlas       620 Dec  1 23:45 runtime_log
[2025-12-01 23:45:16] -rw------- 1 boincer umatlas  10547200 Dec  1 23:45 result.tar.gz
[2025-12-01 23:45:16] -rw-r--r-- 1 boincer umatlas      9423 Dec  1 23:45 runtime_log.err
[2025-12-01 23:45:16] -rw------- 1 boincer umatlas       791 Dec  1 23:45 8HdMDmjIWj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDms4OKDm3HHY1n.diag
[2025-12-01 23:45:16] -rw-r--r-- 1 boincer umatlas     23427 Dec  1 23:45 stderr.txt
[2025-12-01 23:45:16] HITS file was successfully produced:
[2025-12-01 23:45:16] -rw------- 1 boincer umatlas 702553789 Dec  1 23:44 shared/HITS.pool.root.1
[2025-12-01 23:45:16]  *** Contents of shared directory: ***
[2025-12-01 23:45:16] total 1063952
[2025-12-01 23:45:16] -rw-r--r-- 3 boincer umatlas 375766301 Dec  1 06:06 ATLAS.root_0
[2025-12-01 23:45:16] -rw-r--r-- 2 boincer umatlas     15847 Dec  1 06:06 start_atlas.sh
[2025-12-01 23:45:16] -rw-r--r-- 2 boincer umatlas    590120 Dec  1 06:06 input.tar.gz
[2025-12-01 23:45:16] -rw------- 1 boincer umatlas 702553789 Dec  1 23:44 HITS.pool.root.1
[2025-12-01 23:45:16] -rw------- 1 boincer umatlas  10547200 Dec  1 23:45 result.tar.gz
23:45:17 (4188): run_atlas exited; CPU time 456974.083338
23:45:17 (4188): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN