Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:44:20 (22367): wrapper (7.7.26015): starting
05:44:20 (22367): wrapper: running run_atlas (--nthreads 12)
[2025-12-01 05:44:20] Arguments: --nthreads 12
[2025-12-01 05:44:20] Threads: 12
[2025-12-01 05:44:20] Checking for CVMFS
[2025-12-01 05:44:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 05:44:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 05:44:21] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 05:44:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 05:44:21] 2.11.2.0 2981 294732 89168 153514 3 68 12632966 20275201 1 130560 1 133928148 99.964 17751319 14708 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-01 05:44:21] CVMFS is ok
[2025-12-01 05:44:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 05:44:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 05:44:21] Further information can be found at the LHC@home message board.
[2025-12-01 05:44:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 05:44:21] Checking for apptainer binary...
[2025-12-01 05:44:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 05:44:21] Running /usr/bin/apptainer --version
[2025-12-01 05:44:21] apptainer version 1.3.2-1.el7
[2025-12-01 05:44:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 05:44:22] c-205-30.aglt2.org
[2025-12-01 05:44:22] apptainer works
[2025-12-01 05:44:22] Set ATHENA_PROC_NUMBER=12
[2025-12-01 05:44:22] Set ATHENA_CORE_NUMBER=12
[2025-12-01 05:44:22] Starting ATLAS job with PandaID=6908987622
[2025-12-01 05:44:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 07:02:50]  *** The last 200 lines of the pilot log: ***
[2025-12-01 07:02:50]  mtime=0
[2025-12-01 07:02:50]  protocol_id=None
[2025-12-01 07:02:50]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-01 07:02:50]  replicas=None
[2025-12-01 07:02:50]  scope=mc23_13p6TeV
[2025-12-01 07:02:50]  status=None
[2025-12-01 07:02:50]  status_code=0
[2025-12-01 07:02:50]  storage_token=
[2025-12-01 07:02:50]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6908987622/log.46965017._001765.job.log.tgz.1
[2025-12-01 07:02:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/84/ad/log.46965017._001765.job.log.tgz.1
[2025-12-01 07:02:50]  workdir=None
[2025-12-01 07:02:50] ]
[2025-12-01 07:02:50] 2025-12-01 12:01:46,773 | INFO     | transferring file log.46965017._001765.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6908987622/log.46965017._001765.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-01 07:02:50] 2025-12-01 12:01:46,773 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6908987622/log.46965017._001765.job.log.tgz.1 /tmp/boinchome/slots/0/log.46965017._001765.job
[2025-12-01 07:02:50] 2025-12-01 12:01:46,788 | INFO     | adding to output.list: log.46965017._001765.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/84/ad/log.46965017._001765.job.log.tg
[2025-12-01 07:02:50] 2025-12-01 12:01:46,789 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-01 07:02:50] 2025-12-01 12:01:46,789 | INFO     | summary of transferred files:
[2025-12-01 07:02:50] 2025-12-01 12:01:46,789 | INFO     |  -- lfn=log.46965017._001765.job.log.tgz.1, status_code=0, status=transferred
[2025-12-01 07:02:50] 2025-12-01 12:01:46,789 | INFO     | stage-out finished correctly
[2025-12-01 07:02:50] 2025-12-01 12:01:46,791 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 07:02:50] 2025-12-01 12:01:47,334 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-01 07:02:50] 2025-12-01 12:01:47,460 | INFO     | time since job start (4630s) is within the limit (172800.0s)
[2025-12-01 07:02:50] 2025-12-01 12:01:47,488 | INFO     | monitor loop #345: job 0:6908987622 is in state 'finished'
[2025-12-01 07:02:50] 2025-12-01 12:01:47,488 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 07:02:50] 2025-12-01 12:01:48,779 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 07:02:50] 2025-12-01 12:01:48,779 | INFO     | job 6908987622 has state=finished
[2025-12-01 07:02:50] 2025-12-01 12:01:48,780 | INFO     | preparing for final server update for job 6908987622 in state='finished'
[2025-12-01 07:02:50] 2025-12-01 12:01:48,780 | INFO     | this job has now completed (state=finished)
[2025-12-01 07:02:50] 2025-12-01 12:01:48,780 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-01 07:02:50] 2025-12-01 12:01:48,780 | INFO     | log transfer has been attempted: DONE
[2025-12-01 07:02:50] 2025-12-01 12:01:48,781 | INFO     | job 6908987622 has finished - writing final server update
[2025-12-01 07:02:50] 2025-12-01 12:01:48,781 | INFO     | total number of processed events: 400 (read)
[2025-12-01 07:02:50] 2025-12-01 12:01:48,782 | INFO     | executing command: lscpu
[2025-12-01 07:02:50] 2025-12-01 12:01:48,800 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-01 07:02:50] 2025-12-01 12:01:49,466 | INFO     | time since job start (4632s) is within the limit (172800.0s)
[2025-12-01 07:02:50] 2025-12-01 12:01:49,991 | INFO     | monitor loop #346: job 0:6908987622 is in state 'finished'
[2025-12-01 07:02:50] 2025-12-01 12:01:49,991 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 07:02:50] 2025-12-01 12:01:51,471 | INFO     | time since job start (4634s) is within the limit (172800.0s)
[2025-12-01 07:02:50] 2025-12-01 12:01:51,843 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-01 07:02:50] 2025-12-01 12:01:51,845 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 2261.5833333333335
[2025-12-01 07:02:50] 2025-12-01 12:01:51,847 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6908987622/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 07:02:50] 2025-12-01 12:01:51,848 | INFO     | extracted standard info from prmon json
[2025-12-01 07:02:50] 2025-12-01 12:01:51,848 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 07:02:50] 2025-12-01 12:01:51,848 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 07:02:50] 2025-12-01 12:01:51,848 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-01 07:02:50] 2025-12-01 12:01:51,848 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-01 07:02:50] 2025-12-01 12:01:51,850 | INFO     | fitting pss+swap vs Time
[2025-12-01 07:02:50] 2025-12-01 12:01:51,850 | INFO     | sum of square deviations: 101843770.0
[2025-12-01 07:02:50] 2025-12-01 12:01:51,851 | INFO     | sum of deviations: -7924539280.000001
[2025-12-01 07:02:50] 2025-12-01 12:01:51,851 | INFO     | mean x: 1764588285.0
[2025-12-01 07:02:50] 2025-12-01 12:01:51,851 | INFO     | mean y: 2794040.6231884058
[2025-12-01 07:02:50] 2025-12-01 12:01:51,851 | INFO     | intersect: 137306717270.393
[2025-12-01 07:02:50] 2025-12-01 12:01:51,851 | INFO     | chi2: 0.05651919636517863
[2025-12-01 07:02:50] 2025-12-01 12:01:51,851 | INFO     | current memory leak: -77.81 B/s (using 69 data points, chi2=0.06)
[2025-12-01 07:02:50] 2025-12-01 12:01:51,852 | INFO     | could have reported an average CPU frequency of 2145 MHz (6 samples)
[2025-12-01 07:02:50] 2025-12-01 12:01:51,852 | INFO     | ..............................
[2025-12-01 07:02:50] 2025-12-01 12:01:51,852 | INFO     | . Timing measurements:
[2025-12-01 07:02:50] 2025-12-01 12:01:51,852 | INFO     | . get job = 0 s
[2025-12-01 07:02:50] 2025-12-01 12:01:51,852 | INFO     | . initial setup = 2 s
[2025-12-01 07:02:50] 2025-12-01 12:01:51,852 | INFO     | . payload setup = 7 s
[2025-12-01 07:02:50] 2025-12-01 12:01:51,852 | INFO     | . stage-in = 0 s
[2025-12-01 07:02:50] 2025-12-01 12:01:51,852 | INFO     | . payload execution = 4600 s
[2025-12-01 07:02:50] 2025-12-01 12:01:51,853 | INFO     | . stage-out = 0 s
[2025-12-01 07:02:50] 2025-12-01 12:01:51,853 | INFO     | . log creation = 0 s
[2025-12-01 07:02:50] 2025-12-01 12:01:51,853 | INFO     | ..............................
[2025-12-01 07:02:50] 2025-12-01 12:01:52,250 | INFO     | 
[2025-12-01 07:02:50] 2025-12-01 12:01:52,251 | INFO     | job summary report
[2025-12-01 07:02:50] 2025-12-01 12:01:52,251 | INFO     | --------------------------------------------------
[2025-12-01 07:02:50] 2025-12-01 12:01:52,251 | INFO     | PanDA job id: 6908987622
[2025-12-01 07:02:50] 2025-12-01 12:01:52,251 | INFO     | task id: 46965017
[2025-12-01 07:02:50] 2025-12-01 12:01:52,251 | INFO     | errors: (none)
[2025-12-01 07:02:50] 2025-12-01 12:01:52,251 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 07:02:50] 2025-12-01 12:01:52,251 | INFO     | pilot state: finished 
[2025-12-01 07:02:50] 2025-12-01 12:01:52,252 | INFO     | transexitcode: 0
[2025-12-01 07:02:50] 2025-12-01 12:01:52,252 | INFO     | exeerrorcode: 0
[2025-12-01 07:02:50] 2025-12-01 12:01:52,252 | INFO     | exeerrordiag: 
[2025-12-01 07:02:50] 2025-12-01 12:01:52,252 | INFO     | exitcode: 0
[2025-12-01 07:02:50] 2025-12-01 12:01:52,252 | INFO     | exitmsg: OK
[2025-12-01 07:02:50] 2025-12-01 12:01:52,252 | INFO     | cpuconsumptiontime: 50302 s
[2025-12-01 07:02:50] 2025-12-01 12:01:52,252 | INFO     | nevents: 400
[2025-12-01 07:02:50] 2025-12-01 12:01:52,252 | INFO     | neventsw: 0
[2025-12-01 07:02:50] 2025-12-01 12:01:52,252 | INFO     | pid: 32530
[2025-12-01 07:02:50] 2025-12-01 12:01:52,253 | INFO     | pgrp: 32530
[2025-12-01 07:02:50] 2025-12-01 12:01:52,253 | INFO     | corecount: 12
[2025-12-01 07:02:50] 2025-12-01 12:01:52,253 | INFO     | event service: False
[2025-12-01 07:02:50] 2025-12-01 12:01:52,253 | INFO     | sizes: {0: 2283980, 5: 2284242, 11: 2284298, 4611: 2310467, 4613: 2319465, 4614: 2319521, 4618: 2319843}
[2025-12-01 07:02:50] 2025-12-01 12:01:52,253 | INFO     | --------------------------------------------------
[2025-12-01 07:02:50] 2025-12-01 12:01:52,253 | INFO     | 
[2025-12-01 07:02:50] 2025-12-01 12:01:52,253 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-01 07:02:50] 2025-12-01 12:01:52,270 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 07:02:50] 2025-12-01 12:01:52,270 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 07:02:50] 2025-12-01 12:01:52,270 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 07:02:50] 2025-12-01 12:01:52,270 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 07:02:50] 2025-12-01 12:01:52,270 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 07:02:50] 2025-12-01 12:01:52,270 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 07:02:50] 2025-12-01 12:01:52,270 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 07:02:50] 2025-12-01 12:01:52,271 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 07:02:50] 2025-12-01 12:01:52,271 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 07:02:50] 2025-12-01 12:01:52,271 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 07:02:50] 2025-12-01 12:01:52,271 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 07:02:50] 2025-12-01 12:01:52,271 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 07:02:50] 2025-12-01 12:01:52,271 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 07:02:50] 2025-12-01 12:01:52,271 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 07:02:50] 2025-12-01 12:01:52,271 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 07:02:50] 2025-12-01 12:01:52,271 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 07:02:50] 2025-12-01 12:01:52,272 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 07:02:50] 2025-12-01 12:01:52,272 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 07:02:50] 2025-12-01 12:01:52,272 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 07:02:50] 2025-12-01 12:01:52,272 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 07:02:50] 2025-12-01 12:01:52,272 | INFO     | job 6908987622 has completed (purged errors)
[2025-12-01 07:02:50] 2025-12-01 12:01:52,272 | INFO     | overall cleanup function is called
[2025-12-01 07:02:50] 2025-12-01 12:01:53,280 | INFO     | --- collectZombieJob: --- 10, [32530]
[2025-12-01 07:02:50] 2025-12-01 12:01:53,280 | INFO     | zombie collector waiting for pid 32530
[2025-12-01 07:02:50] 2025-12-01 12:01:53,280 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 07:02:50] 2025-12-01 12:01:53,280 | INFO     | collected zombie processes
[2025-12-01 07:02:50] 2025-12-01 12:01:53,280 | INFO     | will attempt to kill all subprocesses of pid=32530
[2025-12-01 07:02:50] 2025-12-01 12:01:53,378 | INFO     | process IDs to be killed: [32530] (in reverse order)
[2025-12-01 07:02:50] 2025-12-01 12:01:53,417 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 07:02:50] 2025-12-01 12:01:53,417 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 07:02:50] 2025-12-01 12:01:53,420 | INFO     | did not find any defunct processes belonging to 32530
[2025-12-01 07:02:50] 2025-12-01 12:01:53,422 | INFO     | did not find any defunct processes belonging to 32530
[2025-12-01 07:02:50] 2025-12-01 12:01:53,424 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 07:02:50] 2025-12-01 12:01:53,424 | INFO     | ready for new job
[2025-12-01 07:02:50] 2025-12-01 12:01:53,424 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 07:02:50] 2025-12-01 12:01:53,426 | INFO     | ***************************************
[2025-12-01 07:02:50] 2025-12-01 12:01:53,426 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 07:02:50] 2025-12-01 12:01:53,426 | INFO     | ***************************************
[2025-12-01 07:02:50] 2025-12-01 12:01:53,426 | INFO     | 
[2025-12-01 07:02:50] 2025-12-01 12:01:53,427 | INFO     | architecture information:
[2025-12-01 07:02:50] 2025-12-01 12:01:53,427 | INFO     | executing command: cat /etc/os-release
[2025-12-01 07:02:50] 2025-12-01 12:01:53,439 | INFO     | cat /etc/os-release:
[2025-12-01 07:02:50] NAME="CentOS Linux"
[2025-12-01 07:02:50] VERSION="7 (Core)"
[2025-12-01 07:02:50] ID="centos"
[2025-12-01 07:02:50] ID_LIKE="rhel fedora"
[2025-12-01 07:02:50] VERSION_ID="7"
[2025-12-01 07:02:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 07:02:50] ANSI_COLOR="0;31"
[2025-12-01 07:02:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 07:02:50] HOME_URL="https://www.centos.org/"
[2025-12-01 07:02:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 07:02:50] 
[2025-12-01 07:02:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 07:02:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 07:02:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 07:02:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 07:02:50] 
[2025-12-01 07:02:50] 2025-12-01 12:01:53,439 | INFO     | ***************************************
[2025-12-01 07:02:50] 2025-12-01 12:01:53,942 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-01 07:02:50] 2025-12-01 12:01:53,954 | INFO     | sufficient remaining disk space (29242687488 B)
[2025-12-01 07:02:50] 2025-12-01 12:01:53,954 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 07:02:50] 2025-12-01 12:01:53,955 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 07:02:50] 2025-12-01 12:01:53,955 | INFO     | update_server=False
[2025-12-01 07:02:50] 2025-12-01 12:01:53,955 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 07:02:50] 2025-12-01 12:01:53,955 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 07:02:50] 2025-12-01 12:01:53,955 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 07:02:50] 2025-12-01 12:01:53,955 | INFO     | aborting loop
[2025-12-01 07:02:50] 2025-12-01 12:01:54,100 | INFO     | all data control threads have been joined
[2025-12-01 07:02:50] 2025-12-01 12:01:54,111 | INFO     | all job control threads have been joined
[2025-12-01 07:02:50] 2025-12-01 12:01:54,891 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 07:02:50] 2025-12-01 12:01:54,913 | INFO     | all payload control threads have been joined
[2025-12-01 07:02:50] 2025-12-01 12:01:54,960 | INFO     | [job] retrieve thread has finished
[2025-12-01 07:02:50] 2025-12-01 12:01:54,961 | INFO     | [job] job monitor thread has finished
[2025-12-01 07:02:50] 2025-12-01 12:01:54,984 | INFO     | [job] validate thread has finished
[2025-12-01 07:02:50] 2025-12-01 12:01:55,105 | INFO     | [data] control thread has finished
[2025-12-01 07:02:50] 2025-12-01 12:01:55,116 | INFO     | [job] control thread has finished
[2025-12-01 07:02:50] 2025-12-01 12:01:55,221 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 07:02:50] 2025-12-01 12:01:55,263 | INFO     | [data] copytool_in thread has finished
[2025-12-01 07:02:50] 2025-12-01 12:01:55,263 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 07:02:50] 2025-12-01 12:01:55,351 | INFO     | [payload] failed_post thread has finished
[2025-12-01 07:02:50] 2025-12-01 12:01:55,705 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 07:02:50] 2025-12-01 12:01:55,861 | INFO     | [payload] validate_post thread has finished
[2025-12-01 07:02:50] 2025-12-01 12:01:55,918 | INFO     | [payload] control thread has finished
[2025-12-01 07:02:50] 2025-12-01 12:01:56,185 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 07:02:50] 2025-12-01 12:01:56,895 | INFO     | [data] copytool_out thread has finished
[2025-12-01 07:02:50] 2025-12-01 12:01:56,946 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 07:02:50] 2025-12-01 12:01:57,951 | INFO     | [job] queue monitor thread has finished
[2025-12-01 07:02:50] 2025-12-01 12:01:57,961 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 07:02:50] 2025-12-01 12:02:24,678 | INFO     | PID=26047 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-01 07:02:50] 2025-12-01 12:02:24,679 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 07:02:50] 2025-12-01 12:02:24,679 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 07:02:50] 2025-12-01 12:02:24,679 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 07:02:50] 2025-12-01 12:02:44,509 | INFO     | [monitor] cgroup control has ended
[2025-12-01 07:02:50] 2025-12-01 12:02:44,922 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140715695470400)>', '<ExcThread(monitor, started 140715141101312)>']
[2025-12-01 07:02:50] 2025-12-01 12:02:45,784 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 07:02:50] 2025-12-01 12:02:45,784 | INFO     | [monitor] control thread has ended
[2025-12-01 07:02:50] 2025-12-01 12:02:49,947 | INFO     | all workflow threads have been joined
[2025-12-01 07:02:50] 2025-12-01 12:02:49,947 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 07:02:50] 2025-12-01 12:02:49,948 | INFO     | traces error code: 0
[2025-12-01 07:02:50] 2025-12-01 12:02:49,948 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 07:02:50] 2025-12-01 12:02:50,055 [wrapper] ==== pilot stdout END ====
[2025-12-01 07:02:50] 2025-12-01 12:02:50,058 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 07:02:50] 2025-12-01 12:02:50,061 [wrapper] pilotpid: 26047
[2025-12-01 07:02:50] 2025-12-01 12:02:50,064 [wrapper] Pilot exit status: 0
[2025-12-01 07:02:50] 2025-12-01 12:02:50,075 [wrapper] pandaids: 6908987622
[2025-12-01 07:02:50] 2025-12-01 12:02:50,112 [wrapper] cleanup supervisor_pilot 22299 26048
[2025-12-01 07:02:50] 2025-12-01 12:02:50,115 [wrapper] Test setup, not cleaning
[2025-12-01 07:02:50] 2025-12-01 12:02:50,117 [wrapper] apfmon messages muted
[2025-12-01 07:02:50] 2025-12-01 12:02:50,120 [wrapper] ==== wrapper stdout END ====
[2025-12-01 07:02:50] 2025-12-01 12:02:50,122 [wrapper] ==== wrapper stderr END ====
[2025-12-01 07:02:50]  *** Error codes and diagnostics ***
[2025-12-01 07:02:50]     "exeErrorCode": 0,
[2025-12-01 07:02:50]     "exeErrorDiag": "",
[2025-12-01 07:02:50]     "pilotErrorCode": 0,
[2025-12-01 07:02:50]     "pilotErrorDiag": "",
[2025-12-01 07:02:50]  *** Listing of results directory ***
[2025-12-01 07:02:50] total 464724
[2025-12-01 07:02:50] -rw-r--r-- 1 boincer umatlas    576529 Nov 30 06:05 pilot3.tar.gz
[2025-12-01 07:02:50] -rwx------ 1 boincer umatlas     36292 Nov 30 06:08 runpilot2-wrapper.sh
[2025-12-01 07:02:50] -rw-r--r-- 1 boincer umatlas      5112 Nov 30 06:09 queuedata.json
[2025-12-01 07:02:50] -rw-r--r-- 1 boincer umatlas       100 Dec  1 05:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 07:02:50] -rwxr-xr-x 1 boincer umatlas      7986 Dec  1 05:44 run_atlas
[2025-12-01 07:02:50] -rw-r--r-- 1 boincer umatlas       105 Dec  1 05:44 job.xml
[2025-12-01 07:02:50] -rw-r--r-- 2 boincer umatlas 275857836 Dec  1 05:44 EVNT.46965009._000068.pool.root.1
[2025-12-01 07:02:50] -rw-r--r-- 2 boincer umatlas     15847 Dec  1 05:44 start_atlas.sh
[2025-12-01 07:02:50] drwxrwx--x 2 boincer umatlas      4096 Dec  1 05:44 shared
[2025-12-01 07:02:50] -rw-r--r-- 2 boincer umatlas    589975 Dec  1 05:44 input.tar.gz
[2025-12-01 07:02:50] -rw-r--r-- 1 boincer umatlas         0 Dec  1 05:44 boinc_lockfile
[2025-12-01 07:02:50] -rw-r--r-- 1 boincer umatlas      2652 Dec  1 05:44 pandaJob.out
[2025-12-01 07:02:50] -rw------- 1 boincer umatlas        57 Dec  1 05:44 setup.sh.local
[2025-12-01 07:02:50] -rw------- 1 boincer umatlas    992109 Dec  1 05:44 agis_schedconf.cvmfs.json
[2025-12-01 07:02:50] -rw------- 1 boincer umatlas   1516240 Dec  1 05:44 agis_ddmendpoints.agis.ALL.json
[2025-12-01 07:02:50] drwx------ 5 boincer umatlas      4096 Dec  1 05:44 pilot3
[2025-12-01 07:02:50] -rw------- 1 boincer umatlas 193967719 Dec  1 07:01 HITS.46965017._001765.pool.root.1
[2025-12-01 07:02:50] -rw-r--r-- 1 boincer umatlas       529 Dec  1 07:01 boinc_task_state.xml
[2025-12-01 07:02:50] -rw------- 1 boincer umatlas        95 Dec  1 07:01 pilot_heartbeat.json
[2025-12-01 07:02:50] -rw------- 1 boincer umatlas      1052 Dec  1 07:01 memory_monitor_summary.json
[2025-12-01 07:02:50] -rw------- 1 boincer umatlas    395491 Dec  1 07:01 log.46965017._001765.job.log.tgz.1
[2025-12-01 07:02:50] -rw------- 1 boincer umatlas      7856 Dec  1 07:01 heartbeat.json
[2025-12-01 07:02:50] -rw-r--r-- 1 boincer umatlas      5953 Dec  1 07:02 init_data.xml
[2025-12-01 07:02:50] -rw-r--r-- 1 boincer umatlas      8192 Dec  1 07:02 boinc_mmap_file
[2025-12-01 07:02:50] -rw-r--r-- 1 boincer umatlas        27 Dec  1 07:02 wrapper_checkpoint.txt
[2025-12-01 07:02:50] -rw------- 1 boincer umatlas      4746 Dec  1 07:02 pilotlog.txt
[2025-12-01 07:02:50] -rw------- 1 boincer umatlas    673761 Dec  1 07:02 log.46965017._001765.job.log.1
[2025-12-01 07:02:50] -rw------- 1 boincer umatlas       357 Dec  1 07:02 output.list
[2025-12-01 07:02:50] -rw-r--r-- 1 boincer umatlas       620 Dec  1 07:02 runtime_log
[2025-12-01 07:02:50] -rw------- 1 boincer umatlas   1085440 Dec  1 07:02 result.tar.gz
[2025-12-01 07:02:50] -rw-r--r-- 1 boincer umatlas      9344 Dec  1 07:02 runtime_log.err
[2025-12-01 07:02:50] -rw------- 1 boincer umatlas       659 Dec  1 07:02 cjxKDmTTuj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjfPKDmubJhIn.diag
[2025-12-01 07:02:50] -rw-r--r-- 1 boincer umatlas     22057 Dec  1 07:02 stderr.txt
[2025-12-01 07:02:50] HITS file was successfully produced:
[2025-12-01 07:02:50] -rw------- 1 boincer umatlas 193967719 Dec  1 07:01 shared/HITS.pool.root.1
[2025-12-01 07:02:50]  *** Contents of shared directory: ***
[2025-12-01 07:02:50] total 460480
[2025-12-01 07:02:50] -rw-r--r-- 2 boincer umatlas 275857836 Dec  1 05:44 ATLAS.root_0
[2025-12-01 07:02:50] -rw-r--r-- 2 boincer umatlas     15847 Dec  1 05:44 start_atlas.sh
[2025-12-01 07:02:50] -rw-r--r-- 2 boincer umatlas    589975 Dec  1 05:44 input.tar.gz
[2025-12-01 07:02:50] -rw------- 1 boincer umatlas 193967719 Dec  1 07:01 HITS.pool.root.1
[2025-12-01 07:02:50] -rw------- 1 boincer umatlas   1085440 Dec  1 07:02 result.tar.gz
07:02:51 (22367): run_atlas exited; CPU time 50279.523071
07:02:51 (22367): called boinc_finish(0)

</stderr_txt>
]]>

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