Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:22:18 (421574): wrapper (7.7.26015): starting
12:22:18 (421574): wrapper: running run_atlas (--nthreads 8)
[2025-12-01 12:22:18] Arguments: --nthreads 8
[2025-12-01 12:22:18] Threads: 8
[2025-12-01 12:22:18] Checking for CVMFS
[2025-12-01 12:22:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-01 12:22:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-01 12:22:19] Running cvmfs_config stat atlas.cern.ch
[2025-12-01 12:22:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-01 12:22:20] 2.13.2.0 5678 40395 171976 153527 3 159 20643204 39288833 7739 16776704 0 33823960 99.783 21648745 37720 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-01 12:22:20] CVMFS is ok
[2025-12-01 12:22:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-01 12:22:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-01 12:22:20] Further information can be found at the LHC@home message board.
[2025-12-01 12:22:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-01 12:22:20] Checking for apptainer binary...
[2025-12-01 12:22:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-01 12:22:20] Running /usr/bin/apptainer --version
[2025-12-01 12:22:20] apptainer version 1.4.4-1.el9
[2025-12-01 12:22:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-01 12:22:20] c-210-21.aglt2.org
[2025-12-01 12:22:20] apptainer works
[2025-12-01 12:22:20] Set ATHENA_PROC_NUMBER=8
[2025-12-01 12:22:20] Set ATHENA_CORE_NUMBER=8
[2025-12-01 12:22:20] Starting ATLAS job with PandaID=6908987370
[2025-12-01 12:22:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-01 15:51:34]  *** The last 200 lines of the pilot log: ***
[2025-12-01 15:51:34] 2025-12-01 20:50:22,626 | INFO     | .. there are 8 such processes running
[2025-12-01 15:51:34] 2025-12-01 20:50:23,414 | INFO     | monitor loop #850: job 0:6908987370 is in state 'finished'
[2025-12-01 15:51:34] 2025-12-01 20:50:23,414 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 15:51:34] 2025-12-01 20:50:23,627 | INFO     | time since job start (12437s) is within the limit (172800.0s)
[2025-12-01 15:51:34] 2025-12-01 20:50:25,635 | INFO     | time since job start (12439s) is within the limit (172800.0s)
[2025-12-01 15:51:34] 2025-12-01 20:50:25,919 | INFO     | monitor loop #851: job 0:6908987370 is in state 'finished'
[2025-12-01 15:51:34] 2025-12-01 20:50:25,924 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-01 15:51:34] 2025-12-01 20:50:27,634 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-01 15:51:34] 2025-12-01 20:50:27,648 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.185900000001
[2025-12-01 15:51:34] 2025-12-01 20:50:27,661 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6908987370/memory_monitor_summary.json (trf name=prmon)
[2025-12-01 15:51:34] 2025-12-01 20:50:27,666 | INFO     | extracted standard info from prmon json
[2025-12-01 15:51:34] 2025-12-01 20:50:27,667 | INFO     | extracted standard memory fields from prmon json
[2025-12-01 15:51:34] 2025-12-01 20:50:27,667 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-01 15:51:34] 2025-12-01 20:50:27,667 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-01 15:51:34] 2025-12-01 20:50:27,667 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-01 15:51:34] 2025-12-01 20:50:27,676 | INFO     | fitting pss+swap vs Time
[2025-12-01 15:51:34] 2025-12-01 20:50:27,676 | INFO     | sum of square deviations: 2556487454.1831803
[2025-12-01 15:51:34] 2025-12-01 20:50:27,678 | INFO     | sum of deviations: -38982364546.19308
[2025-12-01 15:51:34] 2025-12-01 20:50:27,678 | INFO     | mean x: 1764616006.539604
[2025-12-01 15:51:34] 2025-12-01 20:50:27,678 | INFO     | mean y: 2638863.836633663
[2025-12-01 15:51:34] 2025-12-01 20:50:27,678 | INFO     | intersect: 26910224245.65221
[2025-12-01 15:51:34] 2025-12-01 20:50:27,683 | INFO     | chi2: 2.3148276185083287
[2025-12-01 15:51:34] 2025-12-01 20:50:27,683 | INFO     | sum of square deviations: 2371311425.9187737
[2025-12-01 15:51:34] 2025-12-01 20:50:27,685 | INFO     | sum of deviations: -37439207191.60405
[2025-12-01 15:51:34] 2025-12-01 20:50:27,685 | INFO     | mean x: 1764615854.0203047
[2025-12-01 15:51:34] 2025-12-01 20:50:27,685 | INFO     | mean y: 2640138.4010152286
[2025-12-01 15:51:34] 2025-12-01 20:50:27,685 | INFO     | intersect: 27863096529.808174
[2025-12-01 15:51:34] 2025-12-01 20:50:27,686 | INFO     | chi2: 2.309985679711769
[2025-12-01 15:51:34] 2025-12-01 20:50:27,686 | INFO     | current chi2=2.309985679711769 (change=0.20917059904789181 %)
[2025-12-01 15:51:34] 2025-12-01 20:50:27,686 | INFO     | right removable region: 196
[2025-12-01 15:51:34] 2025-12-01 20:50:27,686 | INFO     | sum of square deviations: 2371244923.533002
[2025-12-01 15:51:34] 2025-12-01 20:50:27,693 | INFO     | sum of deviations: -78958741985.12692
[2025-12-01 15:51:34] 2025-12-01 20:50:27,693 | INFO     | mean x: 1764616159.0862944
[2025-12-01 15:51:34] 2025-12-01 20:50:27,693 | INFO     | mean y: 2671489.3604060914
[2025-12-01 15:51:34] 2025-12-01 20:50:27,693 | INFO     | intersect: 58761625752.29032
[2025-12-01 15:51:34] 2025-12-01 20:50:27,694 | INFO     | chi2: 0.39080485960370126
[2025-12-01 15:51:34] 2025-12-01 20:50:27,694 | INFO     | current chi2=0.39080485960370126 (change=83.11732344650635 %)
[2025-12-01 15:51:34] 2025-12-01 20:50:27,694 | INFO     | sum of square deviations: 2195153456.203125
[2025-12-01 15:51:34] 2025-12-01 20:50:27,700 | INFO     | sum of deviations: -77748557519.73439
[2025-12-01 15:51:34] 2025-12-01 20:50:27,700 | INFO     | mean x: 1764616311.640625
[2025-12-01 15:51:34] 2025-12-01 20:50:27,700 | INFO     | mean y: 2670389.1197916665
[2025-12-01 15:51:34] 2025-12-01 20:50:27,700 | INFO     | intersect: 62502343210.69835
[2025-12-01 15:51:34] 2025-12-01 20:50:27,701 | INFO     | chi2: 0.36078333562067216
[2025-12-01 15:51:34] 2025-12-01 20:50:27,701 | INFO     | current chi2=0.36078333562067216 (change=7.681973047487858 %)
[2025-12-01 15:51:34] 2025-12-01 20:50:27,701 | INFO     | left removable region: 20
[2025-12-01 15:51:34] 2025-12-01 20:50:27,701 | INFO     | sum of square deviations: 1690672427.0397778
[2025-12-01 15:51:34] 2025-12-01 20:50:27,702 | INFO     | sum of deviations: -58819193232.289795
[2025-12-01 15:51:34] 2025-12-01 20:50:27,703 | INFO     | mean x: 1764616433.6988637
[2025-12-01 15:51:34] 2025-12-01 20:50:27,703 | INFO     | mean y: 2656987.0511363638
[2025-12-01 15:51:34] 2025-12-01 20:50:27,703 | INFO     | intersect: 61394392804.46241
[2025-12-01 15:51:34] 2025-12-01 20:50:27,703 | INFO     | chi2: 0.3365244779113816
[2025-12-01 15:51:34] 2025-12-01 20:50:27,708 | INFO     | current memory leak: -34.79 B/s (using 176 data points, chi2=0.34)
[2025-12-01 15:51:34] 2025-12-01 20:50:27,708 | INFO     | could have reported an average CPU frequency of 2594 MHz (10 samples)
[2025-12-01 15:51:34] 2025-12-01 20:50:27,709 | INFO     | ..............................
[2025-12-01 15:51:34] 2025-12-01 20:50:27,709 | INFO     | . Timing measurements:
[2025-12-01 15:51:34] 2025-12-01 20:50:27,709 | INFO     | . get job = 0 s
[2025-12-01 15:51:34] 2025-12-01 20:50:27,709 | INFO     | . initial setup = 4 s
[2025-12-01 15:51:34] 2025-12-01 20:50:27,709 | INFO     | . payload setup = 21 s
[2025-12-01 15:51:34] 2025-12-01 20:50:27,709 | INFO     | . stage-in = 0 s
[2025-12-01 15:51:34] 2025-12-01 20:50:27,709 | INFO     | . payload execution = 12333 s
[2025-12-01 15:51:34] 2025-12-01 20:50:27,709 | INFO     | . stage-out = 3 s
[2025-12-01 15:51:34] 2025-12-01 20:50:27,710 | INFO     | . log creation = 0 s
[2025-12-01 15:51:34] 2025-12-01 20:50:27,710 | INFO     | ..............................
[2025-12-01 15:51:34] 2025-12-01 20:50:27,719 | INFO     | time since job start (12441s) is within the limit (172800.0s)
[2025-12-01 15:51:34] 2025-12-01 20:50:27,899 | INFO     | 
[2025-12-01 15:51:34] 2025-12-01 20:50:27,899 | INFO     | job summary report
[2025-12-01 15:51:34] 2025-12-01 20:50:27,899 | INFO     | --------------------------------------------------
[2025-12-01 15:51:34] 2025-12-01 20:50:27,899 | INFO     | PanDA job id: 6908987370
[2025-12-01 15:51:34] 2025-12-01 20:50:27,899 | INFO     | task id: 46965017
[2025-12-01 15:51:34] 2025-12-01 20:50:27,899 | INFO     | errors: (none)
[2025-12-01 15:51:34] 2025-12-01 20:50:27,899 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-01 15:51:34] 2025-12-01 20:50:27,900 | INFO     | pilot state: finished 
[2025-12-01 15:51:34] 2025-12-01 20:50:27,900 | INFO     | transexitcode: 0
[2025-12-01 15:51:34] 2025-12-01 20:50:27,900 | INFO     | exeerrorcode: 0
[2025-12-01 15:51:34] 2025-12-01 20:50:27,900 | INFO     | exeerrordiag: 
[2025-12-01 15:51:34] 2025-12-01 20:50:27,900 | INFO     | exitcode: 0
[2025-12-01 15:51:34] 2025-12-01 20:50:27,900 | INFO     | exitmsg: OK
[2025-12-01 15:51:34] 2025-12-01 20:50:27,900 | INFO     | cpuconsumptiontime: 46517 s
[2025-12-01 15:51:34] 2025-12-01 20:50:27,900 | INFO     | nevents: 400
[2025-12-01 15:51:34] 2025-12-01 20:50:27,900 | INFO     | neventsw: 0
[2025-12-01 15:51:34] 2025-12-01 20:50:27,900 | INFO     | pid: 435991
[2025-12-01 15:51:34] 2025-12-01 20:50:27,901 | INFO     | pgrp: 435991
[2025-12-01 15:51:34] 2025-12-01 20:50:27,901 | INFO     | corecount: 8
[2025-12-01 15:51:34] 2025-12-01 20:50:27,901 | INFO     | event service: False
[2025-12-01 15:51:34] 2025-12-01 20:50:27,901 | INFO     | sizes: {0: 2283753, 1: 2283837, 2: 2284036, 13: 2284036, 24: 2284382, 34: 2284382, 12354: 2314526, 12355: 2314525, 12360: 2323607, 12363: 2323663, 12393: 2323857}
[2025-12-01 15:51:34] 2025-12-01 20:50:27,901 | INFO     | --------------------------------------------------
[2025-12-01 15:51:34] 2025-12-01 20:50:27,901 | INFO     | 
[2025-12-01 15:51:34] 2025-12-01 20:50:27,901 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-01 15:51:34] 2025-12-01 20:50:27,926 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-01 15:51:34] 2025-12-01 20:50:27,926 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-01 15:51:34] 2025-12-01 20:50:27,927 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-01 15:51:34] 2025-12-01 20:50:27,927 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-01 15:51:34] 2025-12-01 20:50:27,927 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-01 15:51:34] 2025-12-01 20:50:27,927 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-01 15:51:34] 2025-12-01 20:50:27,927 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-01 15:51:34] 2025-12-01 20:50:27,927 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-01 15:51:34] 2025-12-01 20:50:27,927 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-01 15:51:34] 2025-12-01 20:50:27,927 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-01 15:51:34] 2025-12-01 20:50:27,927 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-01 15:51:34] 2025-12-01 20:50:27,928 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-01 15:51:34] 2025-12-01 20:50:27,928 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-01 15:51:34] 2025-12-01 20:50:27,928 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-01 15:51:34] 2025-12-01 20:50:27,928 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-01 15:51:34] 2025-12-01 20:50:27,928 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-01 15:51:34] 2025-12-01 20:50:27,928 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-01 15:51:34] 2025-12-01 20:50:27,928 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-01 15:51:34] 2025-12-01 20:50:27,928 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-01 15:51:34] 2025-12-01 20:50:27,928 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-01 15:51:34] 2025-12-01 20:50:27,933 | INFO     | job 6908987370 has completed (purged errors)
[2025-12-01 15:51:34] 2025-12-01 20:50:27,933 | INFO     | overall cleanup function is called
[2025-12-01 15:51:34] 2025-12-01 20:50:28,942 | INFO     | --- collectZombieJob: --- 10, [435991]
[2025-12-01 15:51:34] 2025-12-01 20:50:28,942 | INFO     | zombie collector waiting for pid 435991
[2025-12-01 15:51:34] 2025-12-01 20:50:28,942 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-01 15:51:34] 2025-12-01 20:50:28,942 | INFO     | collected zombie processes
[2025-12-01 15:51:34] 2025-12-01 20:50:28,942 | INFO     | will attempt to kill all subprocesses of pid=435991
[2025-12-01 15:51:34] 2025-12-01 20:50:29,464 | INFO     | process IDs to be killed: [435991] (in reverse order)
[2025-12-01 15:51:34] 2025-12-01 20:50:29,590 | WARNING  | found no corresponding commands to process id(s)
[2025-12-01 15:51:34] 2025-12-01 20:50:29,590 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-01 15:51:34] 2025-12-01 20:50:29,604 | INFO     | did not find any defunct processes belonging to 435991
[2025-12-01 15:51:34] 2025-12-01 20:50:29,612 | INFO     | did not find any defunct processes belonging to 435991
[2025-12-01 15:51:34] 2025-12-01 20:50:29,616 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-01 15:51:34] 2025-12-01 20:50:29,617 | INFO     | ready for new job
[2025-12-01 15:51:34] 2025-12-01 20:50:29,617 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-01 15:51:34] 2025-12-01 20:50:29,619 | INFO     | ***************************************
[2025-12-01 15:51:34] 2025-12-01 20:50:29,619 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-01 15:51:34] 2025-12-01 20:50:29,619 | INFO     | ***************************************
[2025-12-01 15:51:34] 2025-12-01 20:50:29,619 | INFO     | 
[2025-12-01 15:51:34] 2025-12-01 20:50:29,625 | INFO     | architecture information:
[2025-12-01 15:51:34] 2025-12-01 20:50:29,626 | INFO     | executing command: cat /etc/os-release
[2025-12-01 15:51:34] 2025-12-01 20:50:29,676 | INFO     | cat /etc/os-release:
[2025-12-01 15:51:34] NAME="CentOS Linux"
[2025-12-01 15:51:34] VERSION="7 (Core)"
[2025-12-01 15:51:34] ID="centos"
[2025-12-01 15:51:34] ID_LIKE="rhel fedora"
[2025-12-01 15:51:34] VERSION_ID="7"
[2025-12-01 15:51:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-01 15:51:34] ANSI_COLOR="0;31"
[2025-12-01 15:51:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-01 15:51:34] HOME_URL="https://www.centos.org/"
[2025-12-01 15:51:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-01 15:51:34] 
[2025-12-01 15:51:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-01 15:51:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-01 15:51:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-01 15:51:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-01 15:51:34] 
[2025-12-01 15:51:34] 2025-12-01 20:50:29,676 | INFO     | ***************************************
[2025-12-01 15:51:34] 2025-12-01 20:50:30,180 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-01 15:51:34] 2025-12-01 20:50:30,237 | INFO     | sufficient remaining disk space (50430214144 B)
[2025-12-01 15:51:34] 2025-12-01 20:50:30,237 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-01 15:51:34] 2025-12-01 20:50:30,238 | INFO     | current server update state: UPDATING_FINAL
[2025-12-01 15:51:34] 2025-12-01 20:50:30,238 | INFO     | update_server=False
[2025-12-01 15:51:34] 2025-12-01 20:50:30,238 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-01 15:51:34] 2025-12-01 20:50:30,242 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-01 15:51:34] 2025-12-01 20:50:30,242 | INFO     | aborting loop
[2025-12-01 15:51:34] 2025-12-01 20:50:30,313 | INFO     | all payload control threads have been joined
[2025-12-01 15:51:34] 2025-12-01 20:50:30,871 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-01 15:51:34] 2025-12-01 20:50:31,115 | INFO     | all data control threads have been joined
[2025-12-01 15:51:34] 2025-12-01 20:50:31,248 | INFO     | [job] job monitor thread has finished
[2025-12-01 15:51:34] 2025-12-01 20:50:31,255 | INFO     | [job] retrieve thread has finished
[2025-12-01 15:51:34] 2025-12-01 20:50:31,299 | INFO     | all job control threads have been joined
[2025-12-01 15:51:34] 2025-12-01 20:50:31,319 | INFO     | [payload] control thread has finished
[2025-12-01 15:51:34] 2025-12-01 20:50:31,431 | INFO     | [payload] failed_post thread has finished
[2025-12-01 15:51:34] 2025-12-01 20:50:31,541 | INFO     | [payload] validate_post thread has finished
[2025-12-01 15:51:34] 2025-12-01 20:50:31,553 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-01 15:51:34] 2025-12-01 20:50:31,566 | INFO     | [payload] validate_pre thread has finished
[2025-12-01 15:51:34] 2025-12-01 20:50:31,572 | INFO     | [job] create_data_payload thread has finished
[2025-12-01 15:51:34] 2025-12-01 20:50:31,572 | INFO     | [payload] execute_payloads thread has finished
[2025-12-01 15:51:34] 2025-12-01 20:50:32,016 | INFO     | [job] validate thread has finished
[2025-12-01 15:51:34] 2025-12-01 20:50:32,121 | INFO     | [data] control thread has finished
[2025-12-01 15:51:34] 2025-12-01 20:50:32,234 | INFO     | [data] copytool_in thread has finished
[2025-12-01 15:51:34] 2025-12-01 20:50:32,270 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-01 15:51:34] 2025-12-01 20:50:32,305 | INFO     | [job] control thread has finished
[2025-12-01 15:51:34] 2025-12-01 20:50:32,878 | INFO     | [data] copytool_out thread has finished
[2025-12-01 15:51:34] 2025-12-01 20:50:32,918 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-01 15:51:34] 2025-12-01 20:50:33,924 | INFO     | [job] queue monitor thread has finished
[2025-12-01 15:51:34] 2025-12-01 20:50:35,562 | INFO     | [data] queue_monitor thread has finished
[2025-12-01 15:51:34] 2025-12-01 20:51:01,196 | INFO     | PID=427075 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-01 15:51:34] 2025-12-01 20:51:01,196 | INFO     | .. there are 8 such processes running
[2025-12-01 15:51:34] 2025-12-01 20:51:01,197 | INFO     | found 0 job(s) in 20 queues
[2025-12-01 15:51:34] 2025-12-01 20:51:01,197 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-01 15:51:34] 2025-12-01 20:51:01,197 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-01 15:51:34] 2025-12-01 20:51:27,228 | INFO     | [monitor] cgroup control has ended
[2025-12-01 15:51:34] 2025-12-01 20:51:28,282 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139701778380608)>', '<ExcThread(monitor, started 139700832552704)>']
[2025-12-01 15:51:34] 2025-12-01 20:51:28,360 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-01 15:51:34] 2025-12-01 20:51:28,360 | INFO     | [monitor] control thread has ended
[2025-12-01 15:51:34] 2025-12-01 20:51:33,308 | INFO     | all workflow threads have been joined
[2025-12-01 15:51:34] 2025-12-01 20:51:33,308 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-01 15:51:34] 2025-12-01 20:51:33,308 | INFO     | traces error code: 0
[2025-12-01 15:51:34] 2025-12-01 20:51:33,308 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-01 15:51:34] 2025-12-01 20:51:33,471 [wrapper] ==== pilot stdout END ====
[2025-12-01 15:51:34] 2025-12-01 20:51:33,473 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-01 15:51:34] 2025-12-01 20:51:33,507 [wrapper] pilotpid: 427075
[2025-12-01 15:51:34] 2025-12-01 20:51:33,545 [wrapper] Pilot exit status: 0
[2025-12-01 15:51:34] 2025-12-01 20:51:33,574 [wrapper] pandaids: 6908987370
[2025-12-01 15:51:34] 2025-12-01 20:51:33,624 [wrapper] cleanup supervisor_pilot  729870 427076
[2025-12-01 15:51:34] 2025-12-01 20:51:33,627 [wrapper] Test setup, not cleaning
[2025-12-01 15:51:34] 2025-12-01 20:51:33,641 [wrapper] apfmon messages muted
[2025-12-01 15:51:34] 2025-12-01 20:51:33,662 [wrapper] ==== wrapper stdout END ====
[2025-12-01 15:51:34] 2025-12-01 20:51:33,677 [wrapper] ==== wrapper stderr END ====
[2025-12-01 15:51:34]  *** Error codes and diagnostics ***
[2025-12-01 15:51:34]     "exeErrorCode": 0,
[2025-12-01 15:51:34]     "exeErrorDiag": "",
[2025-12-01 15:51:34]     "pilotErrorCode": 0,
[2025-12-01 15:51:34]     "pilotErrorDiag": "",
[2025-12-01 15:51:34]  *** Listing of results directory ***
[2025-12-01 15:51:34] total 460336
[2025-12-01 15:51:34] -rw-r--r--. 1 boincer umatlas    576529 Nov 30 06:05 pilot3.tar.gz
[2025-12-01 15:51:34] -rwx------. 1 boincer umatlas     36292 Nov 30 06:08 runpilot2-wrapper.sh
[2025-12-01 15:51:34] -rw-r--r--. 1 boincer umatlas      5112 Nov 30 06:08 queuedata.json
[2025-12-01 15:51:34] -rw-r--r--. 1 boincer umatlas       100 Dec  1 12:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-01 15:51:34] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  1 12:22 run_atlas
[2025-12-01 15:51:34] -rw-r--r--. 1 boincer umatlas       105 Dec  1 12:22 job.xml
[2025-12-01 15:51:34] -rw-r--r--. 2 boincer umatlas 275592293 Dec  1 12:22 EVNT.46965009._000059.pool.root.1
[2025-12-01 15:51:34] -rw-r--r--. 2 boincer umatlas     15847 Dec  1 12:22 start_atlas.sh
[2025-12-01 15:51:34] drwxrwx--x. 2 boincer umatlas      4096 Dec  1 12:22 shared
[2025-12-01 15:51:34] -rw-r--r--. 2 boincer umatlas    589975 Dec  1 12:22 input.tar.gz
[2025-12-01 15:51:34] -rw-r--r--. 1 boincer umatlas         0 Dec  1 12:22 boinc_lockfile
[2025-12-01 15:51:34] -rw-r--r--. 1 boincer umatlas      2652 Dec  1 12:22 pandaJob.out
[2025-12-01 15:51:34] -rw-------. 1 boincer umatlas        57 Dec  1 12:22 setup.sh.local
[2025-12-01 15:51:34] -rw-------. 1 boincer umatlas    991946 Dec  1 12:23 agis_schedconf.cvmfs.json
[2025-12-01 15:51:34] drwx------. 5 boincer umatlas      4096 Dec  1 12:23 pilot3
[2025-12-01 15:51:34] -rw-------. 1 boincer umatlas 187632990 Dec  1 15:48 HITS.46965017._001528.pool.root.1
[2025-12-01 15:51:34] -rw-r--r--. 1 boincer umatlas       530 Dec  1 15:49 boinc_task_state.xml
[2025-12-01 15:51:34] -rw-r--r--. 1 boincer umatlas      6662 Dec  1 15:49 init_data.xml
[2025-12-01 15:51:34] -rw-------. 1 boincer umatlas      1041 Dec  1 15:49 memory_monitor_summary.json
[2025-12-01 15:51:34] -rw-------. 1 boincer umatlas   1516240 Dec  1 15:49 agis_ddmendpoints.agis.ALL.json
[2025-12-01 15:51:34] -rw-------. 1 boincer umatlas    430318 Dec  1 15:49 log.46965017._001528.job.log.tgz.1
[2025-12-01 15:51:34] -rw-------. 1 boincer umatlas        95 Dec  1 15:50 pilot_heartbeat.json
[2025-12-01 15:51:34] -rw-------. 1 boincer umatlas      7831 Dec  1 15:50 heartbeat.json
[2025-12-01 15:51:34] -rw-r--r--. 1 boincer umatlas      8192 Dec  1 15:51 boinc_mmap_file
[2025-12-01 15:51:34] -rw-r--r--. 1 boincer umatlas        28 Dec  1 15:51 wrapper_checkpoint.txt
[2025-12-01 15:51:34] -rw-------. 1 boincer umatlas      4822 Dec  1 15:51 pilotlog.txt
[2025-12-01 15:51:34] -rw-------. 1 boincer umatlas   1688098 Dec  1 15:51 log.46965017._001528.job.log.1
[2025-12-01 15:51:34] -rw-------. 1 boincer umatlas       357 Dec  1 15:51 output.list
[2025-12-01 15:51:34] -rw-r--r--. 1 boincer umatlas       620 Dec  1 15:51 runtime_log
[2025-12-01 15:51:34] -rw-------. 1 boincer umatlas   2140160 Dec  1 15:51 result.tar.gz
[2025-12-01 15:51:34] -rw-------. 1 boincer umatlas       655 Dec  1 15:51 Z4WMDmITuj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgdPKDm3UhfCn.diag
[2025-12-01 15:51:34] -rw-r--r--. 1 boincer umatlas      9343 Dec  1 15:51 runtime_log.err
[2025-12-01 15:51:34] -rw-r--r--. 1 boincer umatlas     21507 Dec  1 15:51 stderr.txt
[2025-12-01 15:51:34] HITS file was successfully produced:
[2025-12-01 15:51:34] -rw-------. 1 boincer umatlas 187632990 Dec  1 15:48 shared/HITS.pool.root.1
[2025-12-01 15:51:34]  *** Contents of shared directory: ***
[2025-12-01 15:51:34] total 455064
[2025-12-01 15:51:34] -rw-r--r--. 2 boincer umatlas 275592293 Dec  1 12:22 ATLAS.root_0
[2025-12-01 15:51:34] -rw-r--r--. 2 boincer umatlas     15847 Dec  1 12:22 start_atlas.sh
[2025-12-01 15:51:34] -rw-r--r--. 2 boincer umatlas    589975 Dec  1 12:22 input.tar.gz
[2025-12-01 15:51:34] -rw-------. 1 boincer umatlas 187632990 Dec  1 15:48 HITS.pool.root.1
[2025-12-01 15:51:34] -rw-------. 1 boincer umatlas   2140160 Dec  1 15:51 result.tar.gz
15:51:56 (421574): run_atlas exited; CPU time 46715.853004
15:51:56 (421574): called boinc_finish(0)

</stderr_txt>
]]>

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